PI0015604 (gene) Melon (PI 482460) v1

Overview


Name	PI0015604
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr04: 28118887 .. 28119269 (-)
RNA-Seq Expression	PI0015604
Synteny	PI0015604

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATGAAGGAGTCAGAAGGAGTATCTGACTACATCACCCGAGTTCAAACGGTGGTTAACCAACTTAAACGCAATGGAGAAACCCTCAAAGATGCCAGGGTTGTGGAGAAAATCCTTCGATCATTGACAAATGACTTTGAAAATGTGGTATGTGCAATTGAGGAGTCAAAGAATTTGGAAGAAATGACTATTGATGAACTTGCAGGTTCCCTTGAAGCACATGAACAAAGAAAGAAAAAAAGACAACAAGAAGTCATAGAAGAGGCGACCTTACAAACAAAGATGACCATCAAAGAAGACAAGGCAATGTATGCACAACACAATCGAGGAAGAGGACGTTGCAGTTTCAGTCACGACAAAGGTTATGGTCGTGGAAATAA

mRNA sequence

ATGAAAATGAAGGAGTCAGAAGGAGTATCTGACTACATCACCCGAGTTCAAACGGTGGTTAACCAACTTAAACGCAATGGAGAAACCCTCAAAGATGCCAGGGTTGTGGAGAAAATCCTTCGATCATTGACAAATGACTTTGAAAATGTGGTATGTGCAATTGAGGAGTCAAAGAATTTGGAAGAAATGACTATTGATGAACTTGCAGAAAAAAAGACAACAAGAAGTCATAGAAGAGGCGACCTTACAAACAAAGATGACCATCAAAGAAGACAAGGCAATGTATGCACAACACAATCGAGGAAGAGGACGTTGCAGTTTCAGTCACGACAAAGGTTATGGTCGTGGAAATAA

Coding sequence (CDS)

ATGAAAATGAAGGAGTCAGAAGGAGTATCTGACTACATCACCCGAGTTCAAACGGTGGTTAACCAACTTAAACGCAATGGAGAAACCCTCAAAGATGCCAGGGTTGTGGAGAAAATCCTTCGATCATTGACAAATGACTTTGAAAATGTGGTATGTGCAATTGAGGAGTCAAAGAATTTGGAAGAAATGACTATTGATGAACTTGCAGAAAAAAAGACAACAAGAAGTCATAGAAGAGGCGACCTTACAAACAAAGATGACCATCAAAGAAGACAAGGCAATGTATGCACAACACAATCGAGGAAGAGGACGTTGCAGTTTCAGTCACGACAAAGGTTATGGTCGTGGAAATAA

Protein sequence

MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRSLTNDFENVVCAIEESKNLEEMTIDELAEKKTTRSHRRGDLTNKDDHQRRQGNVCTTQSRKRTLQFQSRQRLWSWK

Homology

[Close]

BLAST of PI0015604 vs. ExPASy TrEMBL
Match: A0A5D3C1S7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00390 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 9.1e-33
Identity = 85/112 (75.89%), Postives = 92/112 (82.14%), Query Frame = 0


Query: 1   MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRSLTNDFENVVCAIEESKNL 60
           MK+KESE VSDYIT+VQTVVNQLKRNG+T KD R+VEKILRSLTNDF+NVVCAIE+ KNL
Sbjct: 1   MKIKESEVVSDYITQVQTVVNQLKRNGKTFKDVRIVEKILRSLTNDFKNVVCAIEKLKNL 60

Query: 61  EEMTIDELA--------EKKTTRSHRRGDLTNKDDHQRRQGNVCTTQSRKRT 105
           EEMTI EL          KK TR   RG LTNKDDHQRRQGNVCTTQSRK+T
Sbjct: 61  EEMTIGELVSSLEAHELRKKKTRG-PRGGLTNKDDHQRRQGNVCTTQSRKKT 111

[Close]

BLAST of PI0015604 vs. ExPASy TrEMBL
Match: A0A5D3CND8 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold818G00050 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 6.3e-26
Identity = 74/106 (69.81%), Postives = 79/106 (74.53%), Query Frame = 0


Query: 10  SDYITRVQTVVNQLKRNGETLKDARVVEKILRSLTNDFENVVCAIEESKNLEEMTI---- 69
           +D + + Q VVNQLK NG+TLKDARVVEKI  SLTNDFENVVCA EESKNLEEMT     
Sbjct: 44  ADRVKQAQMVVNQLKHNGDTLKDARVVEKIFLSLTNDFENVVCATEESKNLEEMTTMILQ 103

Query: 70  -------DELAEKKTTRSHRRGDLTNKDDHQRRQGNVCTTQSRKRT 105
                   E  EKKTTR   RG +TNKDDHQRRQGNVCTTQSRKRT
Sbjct: 104 IPLKHMNKERKEKKTTRDPGRG-ITNKDDHQRRQGNVCTTQSRKRT 148

[Close]

BLAST of PI0015604 vs. ExPASy TrEMBL
Match: A0A6A2XY19 (Integrase catalytic domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111877pilonHSYRG00353 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.2e-23
Identity = 64/80 (80.00%), Postives = 68/80 (85.00%), Query Frame = 0


Query: 1   MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRSLTNDFENVVCAIEESKNL 60
           M MKESEGVSDYIT VQTVVNQLK NGETLKD+RVVEKILRSLT+DFENVVCAIEESK+L
Sbjct: 97  MTMKESEGVSDYITHVQTVVNQLKCNGETLKDSRVVEKILRSLTDDFENVVCAIEESKDL 156

Query: 61  EEMTIDELAEKKTTRSHRRG 81
           EE+TID LA        RRG
Sbjct: 157 EELTIDHLAGSLEAHEQRRG 176

[Close]

BLAST of PI0015604 vs. ExPASy TrEMBL
Match: A0A6A3CTC0 (Integrase catalytic domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00001860pilonHSYRG00008 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.5e-22
Identity = 66/95 (69.47%), Postives = 74/95 (77.89%), Query Frame = 0


Query: 1   MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRSLTNDFENVVCAIEESKNL 60
           MKMKESEGVSD ITRVQTVVNQLK  GETLKD+RVVEKILRSLT+DFENVVCAIEESK+L
Sbjct: 73  MKMKESEGVSDNITRVQTVVNQLKCKGETLKDSRVVEKILRSLTDDFENVVCAIEESKDL 132

Query: 61  EEMTIDELAEKKTTRSHRRGDLTNKDDHQRRQGNV 96
           EE+TID+LA        R+    N+   +  Q NV
Sbjct: 133 EELTIDDLAGSLEAHEQRKKKKKNESLEEALQANV 167

[Close]

BLAST of PI0015604 vs. ExPASy TrEMBL
Match: A0A2I0VED6 (Uncharacterized protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca028474 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.5e-22
Identity = 60/69 (86.96%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1   MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRSLTNDFENVVCAIEESKNL 60
           MKMKESEGVSDYITRVQTVVNQLKRNGE L DARVVEKILRSLTN+FENVVCAIEESK+L
Sbjct: 99  MKMKESEGVSDYITRVQTVVNQLKRNGEMLTDARVVEKILRSLTNNFENVVCAIEESKDL 158

Query: 61  EEMTIDELA 70
             +T++ELA
Sbjct: 159 GTLTVEELA 167

[Close]

BLAST of PI0015604 vs. NCBI nr
Match: KAA0052859.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK04366.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 149.4 bits (376), Expect = 1.9e-32
Identity = 85/112 (75.89%), Postives = 92/112 (82.14%), Query Frame = 0


Query: 1   MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRSLTNDFENVVCAIEESKNL 60
           MK+KESE VSDYIT+VQTVVNQLKRNG+T KD R+VEKILRSLTNDF+NVVCAIE+ KNL
Sbjct: 1   MKIKESEVVSDYITQVQTVVNQLKRNGKTFKDVRIVEKILRSLTNDFKNVVCAIEKLKNL 60

Query: 61  EEMTIDELA--------EKKTTRSHRRGDLTNKDDHQRRQGNVCTTQSRKRT 105
           EEMTI EL          KK TR   RG LTNKDDHQRRQGNVCTTQSRK+T
Sbjct: 61  EEMTIGELVSSLEAHELRKKKTRG-PRGGLTNKDDHQRRQGNVCTTQSRKKT 111

[Close]

BLAST of PI0015604 vs. NCBI nr
Match: KAA0060771.1 (polyprotein [Cucumis melo var. makuwa] >TYK13387.1 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 126.7 bits (317), Expect = 1.3e-25
Identity = 74/106 (69.81%), Postives = 79/106 (74.53%), Query Frame = 0


Query: 10  SDYITRVQTVVNQLKRNGETLKDARVVEKILRSLTNDFENVVCAIEESKNLEEMTI---- 69
           +D + + Q VVNQLK NG+TLKDARVVEKI  SLTNDFENVVCA EESKNLEEMT     
Sbjct: 44  ADRVKQAQMVVNQLKHNGDTLKDARVVEKIFLSLTNDFENVVCATEESKNLEEMTTMILQ 103

Query: 70  -------DELAEKKTTRSHRRGDLTNKDDHQRRQGNVCTTQSRKRT 105
                   E  EKKTTR   RG +TNKDDHQRRQGNVCTTQSRKRT
Sbjct: 104 IPLKHMNKERKEKKTTRDPGRG-ITNKDDHQRRQGNVCTTQSRKRT 148

[Close]

BLAST of PI0015604 vs. NCBI nr
Match: KAE8672005.1 (hypothetical protein F3Y22_tig00111877pilonHSYRG00353 [Hibiscus syriacus])

HSP 1 Score: 118.2 bits (295), Expect = 4.6e-23
Identity = 64/80 (80.00%), Postives = 68/80 (85.00%), Query Frame = 0


Query: 1   MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRSLTNDFENVVCAIEESKNL 60
           M MKESEGVSDYIT VQTVVNQLK NGETLKD+RVVEKILRSLT+DFENVVCAIEESK+L
Sbjct: 97  MTMKESEGVSDYITHVQTVVNQLKCNGETLKDSRVVEKILRSLTDDFENVVCAIEESKDL 156

Query: 61  EEMTIDELAEKKTTRSHRRG 81
           EE+TID LA        RRG
Sbjct: 157 EELTIDHLAGSLEAHEQRRG 176

[Close]

BLAST of PI0015604 vs. NCBI nr
Match: XP_038878101.1 (uncharacterized protein LOC120070273 isoform X4 [Benincasa hispida])

HSP 1 Score: 116.3 bits (290), Expect = 1.8e-22
Identity = 63/79 (79.75%), Postives = 68/79 (86.08%), Query Frame = 0


Query: 1   MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRSLTNDFENVVCAIEESKNL 60
           MKMKESE VS YITRVQTVVNQLKRNGETL+DA+VVEKILRSLTNDF+NVVCAIEESK L
Sbjct: 127 MKMKESERVSHYITRVQTVVNQLKRNGETLEDAKVVEKILRSLTNDFKNVVCAIEESKTL 186

Query: 61  EEMTIDELAEKKTTRSHRR 80
           EEMTID+LA        R+
Sbjct: 187 EEMTIDDLAGSFEAHEQRK 205

[Close]

BLAST of PI0015604 vs. NCBI nr
Match: KAE8732520.1 (Detected protein of unknown function [Hibiscus syriacus])

HSP 1 Score: 115.5 bits (288), Expect = 3.0e-22
Identity = 66/95 (69.47%), Postives = 74/95 (77.89%), Query Frame = 0


Query: 1   MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRSLTNDFENVVCAIEESKNL 60
           MKMKESEGVSD ITRVQTVVNQLK  GETLKD+RVVEKILRSLT+DFENVVCAIEESK+L
Sbjct: 73  MKMKESEGVSDNITRVQTVVNQLKCKGETLKDSRVVEKILRSLTDDFENVVCAIEESKDL 132

Query: 61  EEMTIDELAEKKTTRSHRRGDLTNKDDHQRRQGNV 96
           EE+TID+LA        R+    N+   +  Q NV
Sbjct: 133 EELTIDDLAGSLEAHEQRKKKKKNESLEEALQANV 167

The following BLAST results are available for this feature:

BLAST of PI0015604 vs.


Match Name	E-value	Identity	Description

BLAST of PI0015604 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C1S7	9.1e-33	75.89	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CND8	6.3e-26	69.81	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold818G00050 PE...	[more]
A0A6A2XY19	2.2e-23	80.00	Integrase catalytic domain-containing protein OS=Hibiscus syriacus OX=106335 GN=...	[more]
A0A6A3CTC0	1.5e-22	69.47	Integrase catalytic domain-containing protein OS=Hibiscus syriacus OX=106335 GN=...	[more]
A0A2I0VED6	2.5e-22	86.96	Uncharacterized protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca028474 PE=4...	[more]

BLAST of PI0015604 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052859.1	1.9e-32	75.89	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0060771.1	1.3e-25	69.81	polyprotein [Cucumis melo var. makuwa] >TYK13387.1 polyprotein [Cucumis melo var...	[more]
KAE8672005.1	4.6e-23	80.00	hypothetical protein F3Y22_tig00111877pilonHSYRG00353 [Hibiscus syriacus]	[more]
XP_038878101.1	1.8e-22	79.75	uncharacterized protein LOC120070273 isoform X4 [Benincasa hispida]	[more]
KAE8732520.1	3.0e-22	69.47	Detected protein of unknown function [Hibiscus syriacus]	[more]

BLAST of PI0015604 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 1..78 e-value: 1.3E-15 score: 57.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..103
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 2..69
None	No IPR available	PANTHER	PTHR34222:SF30	SUBFAMILY NOT NAMED	coord: 2..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0015604.1	PI0015604.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding