PI0015487 (gene) Melon (PI 482460) v1

Overview


Name	PI0015487
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Reverse transcriptase
Location	chr03: 23299980 .. 23300450 (+)
RNA-Seq Expression	PI0015487
Synteny	PI0015487

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATTTGGCTTGACTAACGCTCCTACAGTATTCATGGATCTGATGAATAGGGTGTTCAAGGATTTCTTGGACACTTTTGTAATTGTGTTCATTGATGACATCCTGGTTTACTCCAAAACGGAGGCCGAGCATGAGAATCATTTGCGCAAGGTCTTGGAGACTCTTCGAGCTAATCAGTTGTTTGCCAAGTTCTCGAAGTGTGAATTCTGGTTGAGGCAGGTATCTTTCTTAGGCCATGTGGTGTCCAAGGATGGTGTCTTAGTGGATCCAGCGAAGATAGAAGCAGTCACCAATTGGTCCAGACCCTCCTCAATCGAGGTTCGTAGTTTTCTAGGTCTTGCAGGTTATTACCGCAGGTTCGTGGAGAACTTCTCCCGTATTGCTTCTCCTTTGACTCAGTTGACCAGGAAAGGGACTCCATTTGTTTGGAGTGAGGCTTGTGAGGACAGTTTCCAAATTCTCAAGTAG

mRNA sequence

ATGTCATTTGGCTTGACTAACGCTCCTACAGTATTCATGGATCTGATGAATAGGGTGTTCAAGGATTTCTTGGACACTTTTGTAATTGTGTTCATTGATGACATCCTGGTTTACTCCAAAACGGAGGCCGAGCATGAGAATCATTTGCGCAAGGTCTTGGAGACTCTTCGAGCTAATCAGTTGTTTGCCAAGTTCTCGAAGTGTGAATTCTGGTTGAGGCAGGTATCTTTCTTAGGCCATGTGGTGTCCAAGGATGGTGTCTTAGTGGATCCAGCGAAGATAGAAGCAGTCACCAATTGGTCCAGACCCTCCTCAATCGAGGTTCGTAGTTTTCTAGGTCTTGCAGGTTATTACCGCAGGTTCGTGGAGAACTTCTCCCGTATTGCTTCTCCTTTGACTCAGTTGACCAGGAAAGGGACTCCATTTGTTTGGAGTGAGGCTTGTGAGGACAGTTTCCAAATTCTCAAGTAG

Coding sequence (CDS)

ATGTCATTTGGCTTGACTAACGCTCCTACAGTATTCATGGATCTGATGAATAGGGTGTTCAAGGATTTCTTGGACACTTTTGTAATTGTGTTCATTGATGACATCCTGGTTTACTCCAAAACGGAGGCCGAGCATGAGAATCATTTGCGCAAGGTCTTGGAGACTCTTCGAGCTAATCAGTTGTTTGCCAAGTTCTCGAAGTGTGAATTCTGGTTGAGGCAGGTATCTTTCTTAGGCCATGTGGTGTCCAAGGATGGTGTCTTAGTGGATCCAGCGAAGATAGAAGCAGTCACCAATTGGTCCAGACCCTCCTCAATCGAGGTTCGTAGTTTTCTAGGTCTTGCAGGTTATTACCGCAGGTTCGTGGAGAACTTCTCCCGTATTGCTTCTCCTTTGACTCAGTTGACCAGGAAAGGGACTCCATTTGTTTGGAGTGAGGCTTGTGAGGACAGTTTCCAAATTCTCAAGTAG

Protein sequence

MSFGLTNAPTVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHENHLRKVLETLRANQLFAKFSKCEFWLRQVSFLGHVVSKDGVLVDPAKIEAVTNWSRPSSIEVRSFLGLAGYYRRFVENFSRIASPLTQLTRKGTPFVWSEACEDSFQILK

Homology

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BLAST of PI0015487 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.1e-26
Identity = 55/141 (39.01%), Postives = 89/141 (63.12%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHENHLRKVLETLRANQ 60
           M FGL NAP  F   MN + +  L+   +V++DDI+++S +  EH N ++ V   L    
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LFAKFSKCEFWLRQVSFLGHVVSKDGVLVDPAKIEAVTNWSRPS-SIEVRSFLGLAGYYR 120
           L  +  KCEF  ++ +FLGH+V+ DG+  +P K++A+ ++  P+   E+R+FLGL GYYR
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 121 RFVENFSRIASPLTQLTRKGT 141
           +F+ N++ IA P+T   +K T
Sbjct: 453 KFIPNYADIAKPMTSCLKKRT 473

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BLAST of PI0015487 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 8.1e-26
Identity = 58/139 (41.73%), Postives = 87/139 (62.59%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHENHLRKVLETLRANQ 60
           M FGL NAP  F   MN + +  L+   +V++DDI+V+S +  EH   L  V E L    
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LFAKFSKCEFWLRQVSFLGHVVSKDGVLVDPAKIEAVTNWSRPSS-IEVRSFLGLAGYYR 120
           L  +  KCEF  ++ +FLGHV++ DG+  +P KIEA+  +  P+   E+++FLGL GYYR
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 RFVENFSRIASPLTQLTRK 139
           +F+ NF+ IA P+T+  +K
Sbjct: 454 KFIPNFADIAKPMTKCLKK 472

[Close]

BLAST of PI0015487 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.4e-24
Identity = 52/138 (37.68%), Postives = 87/138 (63.04%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHENHLRKVLETLRANQ 60
           + FGL NAP +F  +++ + ++ +     V+IDDI+V+S+    H  +LR VL +L    
Sbjct: 250 LPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKAN 309

Query: 61  LFAKFSKCEFWLRQVSFLGHVVSKDGVLVDPAKIEAVTNWSRPSSI-EVRSFLGLAGYYR 120
           L     K  F   QV FLG++V+ DG+  DP K+ A++    P+S+ E++ FLG+  YYR
Sbjct: 310 LQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYR 369

Query: 121 RFVENFSRIASPLTQLTR 138
           +F+++++++A PLT LTR
Sbjct: 370 KFIQDYAKVAKPLTNLTR 387

[Close]

BLAST of PI0015487 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.8e-23
Identity = 55/168 (32.74%), Postives = 96/168 (57.14%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHENHLRKVLETLRANQ 60
           + FGL NA ++F   ++ V ++ +     V++DD++++S+ E++H  H+  VL+ L    
Sbjct: 309 LPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDAN 368

Query: 61  LFAKFSKCEFWLRQVSFLGHVVSKDGVLVDPAKIEAVTNWSRPSSI-EVRSFLGLAGYYR 120
           +     K  F+   V +LG +VSKDG   DP K++A+  +  P  + +VRSFLGLA YYR
Sbjct: 369 MRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYR 428

Query: 121 RFVENFSRIASPLTQLTR-----------KGTPFVWSEACEDSFQILK 157
            F+++F+ IA P+T + +           K  P  ++E   ++FQ L+
Sbjct: 429 VFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLR 476

[Close]

BLAST of PI0015487 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 7.1e-22
Identity = 50/157 (31.85%), Postives = 88/157 (56.05%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHENHLRKVLETLRANQ 60
           M +G++ AP  F   +N +  +  ++ V+ ++DDIL++SK+E+EH  H++ VL+ L+   
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LFAKFSKCEFWLRQVSFLGHVVSKDGVLVDPAKIEAVTNWSRPSS-IEVRSFLGLAGYYR 120
           L    +KCEF   QV F+G+ +S+ G       I+ V  W +P +  E+R FLG   Y R
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLR 653

Query: 121 RFVENFSRIASPLTQLTRKGTPFVWSEACEDSFQILK 157
           +F+   S++  PL  L +K   + W+     + + +K
Sbjct: 654 KFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIK 690

[Close]

BLAST of PI0015487 vs. ExPASy TrEMBL
Match: A0A5A7TSI1 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G005780 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 3.5e-72
Identity = 136/157 (86.62%), Postives = 148/157 (94.27%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHENHLRKVLETLRANQ 60
           MSFGLTNAP VFMDLMNRVF++FLDTFVIVFIDDIL+YSKTEAEHE HLR VL+TLR N+
Sbjct: 721 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 780

Query: 61  LFAKFSKCEFWLRQVSFLGHVVSKDGVLVDPAKIEAVTNWSRPSSI-EVRSFLGLAGYYR 120
           L+AKFSKCEFWL+QVSFLGHVVSKDGV VDPAKIEAVT W+RPS++ EVRSFLGLAGYYR
Sbjct: 781 LYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 840

Query: 121 RFVENFSRIASPLTQLTRKGTPFVWSEACEDSFQILK 157
           RFVENFSRIA+PLTQLTRKG PFVWS+ACEDSFQ LK
Sbjct: 841 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQTLK 877

[Close]

BLAST of PI0015487 vs. ExPASy TrEMBL
Match: A0A5A7V1X7 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00800 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 3.5e-72
Identity = 136/157 (86.62%), Postives = 148/157 (94.27%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHENHLRKVLETLRANQ 60
           MSFGLTNAP VFMDLMNRVF++FLDTFVIVFIDDIL+YSKTEAEHE HLR VL+TLR N+
Sbjct: 115 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 174

Query: 61  LFAKFSKCEFWLRQVSFLGHVVSKDGVLVDPAKIEAVTNWSRPSSI-EVRSFLGLAGYYR 120
           L+AKFSKCEFWL+QVSFLGHVVSKDGV VDPAKIEAVT W+RPS++ EVRSFLGLAGYYR
Sbjct: 175 LYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 234

Query: 121 RFVENFSRIASPLTQLTRKGTPFVWSEACEDSFQILK 157
           RFVENFSRIA+PLTQLTRKG PFVWS+ACEDSFQ LK
Sbjct: 235 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQTLK 271

[Close]

BLAST of PI0015487 vs. ExPASy TrEMBL
Match: A0A5A7UV42 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold108G00570 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 4.5e-72
Identity = 136/157 (86.62%), Postives = 149/157 (94.90%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHENHLRKVLETLRANQ 60
           MSFGLTNAPTVFMDLMNRVF++FLDTFVIVFIDDIL+YSKTEAEHE HLRKVL+TLR N+
Sbjct: 472 MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRKVLQTLRDNK 531

Query: 61  LFAKFSKCEFWLRQVSFLGHVVSKDGVLVDPAKIEAVTNWSRPSSI-EVRSFLGLAGYYR 120
           L+AKFSKCEFWL+QVSFLGHV+SK GV VDPAKIEAVT W+RPS++ EVRSFLGLAGYYR
Sbjct: 532 LYAKFSKCEFWLKQVSFLGHVISKVGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 591

Query: 121 RFVENFSRIASPLTQLTRKGTPFVWSEACEDSFQILK 157
           RFVENFSRIA+PLTQLTRKG PFVWS+ACEDSFQ LK
Sbjct: 592 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLK 628

[Close]

BLAST of PI0015487 vs. ExPASy TrEMBL
Match: A0A5A7V1N3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G004680 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 7.8e-72
Identity = 136/157 (86.62%), Postives = 148/157 (94.27%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHENHLRKVLETLRANQ 60
           MSFGLTNAP VFMDLMNRVF++FLDTFVIVFIDDIL+YSKTEAEHENHLR VL+TLR N+
Sbjct: 770 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHENHLRMVLQTLRDNK 829

Query: 61  LFAKFSKCEFWLRQVSFLGHVVSKDGVLVDPAKIEAVTNWSRPSSI-EVRSFLGLAGYYR 120
           L+AKFSKCEFWL+QVSFLGHVVSK GV VDPAKIEAVT W+RPS++ EVRSFLGLAGYYR
Sbjct: 830 LYAKFSKCEFWLKQVSFLGHVVSKTGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 889

Query: 121 RFVENFSRIASPLTQLTRKGTPFVWSEACEDSFQILK 157
           RFVENFSRIA+PLTQLTRKG PFVWS+ACEDSFQ LK
Sbjct: 890 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLK 926

[Close]

BLAST of PI0015487 vs. ExPASy TrEMBL
Match: A0A5A7T165 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G00390 PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.3e-71
Identity = 135/157 (85.99%), Postives = 148/157 (94.27%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHENHLRKVLETLRANQ 60
           MSFGLTNAPTVFMDLMNRVFKDFLD+FVIVFIDDIL+YSKTEAEHE HL +VLETLRAN+
Sbjct: 470 MSFGLTNAPTVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEKHLHQVLETLRANK 529

Query: 61  LFAKFSKCEFWLRQVSFLGHVVSKDGVLVDPAKIEAVTNWSRPSSI-EVRSFLGLAGYYR 120
           L+AKFSKCEFWLR+V+FLGHVVS + V VDPAKIEAVTNW RPS++ E+RSFLGLAGYYR
Sbjct: 530 LYAKFSKCEFWLRKVTFLGHVVSSERVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 589

Query: 121 RFVENFSRIASPLTQLTRKGTPFVWSEACEDSFQILK 157
           RFVE+FSRIASPLTQLTRKGTPFVWS ACE SFQ+LK
Sbjct: 590 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQMLK 626

[Close]

BLAST of PI0015487 vs. NCBI nr
Match: KAA0060847.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 280.8 bits (717), Expect = 7.2e-72
Identity = 136/157 (86.62%), Postives = 148/157 (94.27%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHENHLRKVLETLRANQ 60
           MSFGLTNAP VFMDLMNRVF++FLDTFVIVFIDDIL+YSKTEAEHE HLR VL+TLR N+
Sbjct: 115 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 174

Query: 61  LFAKFSKCEFWLRQVSFLGHVVSKDGVLVDPAKIEAVTNWSRPSSI-EVRSFLGLAGYYR 120
           L+AKFSKCEFWL+QVSFLGHVVSKDGV VDPAKIEAVT W+RPS++ EVRSFLGLAGYYR
Sbjct: 175 LYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 234

Query: 121 RFVENFSRIASPLTQLTRKGTPFVWSEACEDSFQILK 157
           RFVENFSRIA+PLTQLTRKG PFVWS+ACEDSFQ LK
Sbjct: 235 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQTLK 271

[Close]

BLAST of PI0015487 vs. NCBI nr
Match: KAA0046014.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 280.8 bits (717), Expect = 7.2e-72
Identity = 136/157 (86.62%), Postives = 148/157 (94.27%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHENHLRKVLETLRANQ 60
           MSFGLTNAP VFMDLMNRVF++FLDTFVIVFIDDIL+YSKTEAEHE HLR VL+TLR N+
Sbjct: 721 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 780

Query: 61  LFAKFSKCEFWLRQVSFLGHVVSKDGVLVDPAKIEAVTNWSRPSSI-EVRSFLGLAGYYR 120
           L+AKFSKCEFWL+QVSFLGHVVSKDGV VDPAKIEAVT W+RPS++ EVRSFLGLAGYYR
Sbjct: 781 LYAKFSKCEFWLKQVSFLGHVVSKDGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 840

Query: 121 RFVENFSRIASPLTQLTRKGTPFVWSEACEDSFQILK 157
           RFVENFSRIA+PLTQLTRKG PFVWS+ACEDSFQ LK
Sbjct: 841 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQTLK 877

[Close]

BLAST of PI0015487 vs. NCBI nr
Match: KAA0059792.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 280.4 bits (716), Expect = 9.4e-72
Identity = 136/157 (86.62%), Postives = 149/157 (94.90%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHENHLRKVLETLRANQ 60
           MSFGLTNAPTVFMDLMNRVF++FLDTFVIVFIDDIL+YSKTEAEHE HLRKVL+TLR N+
Sbjct: 472 MSFGLTNAPTVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRKVLQTLRDNK 531

Query: 61  LFAKFSKCEFWLRQVSFLGHVVSKDGVLVDPAKIEAVTNWSRPSSI-EVRSFLGLAGYYR 120
           L+AKFSKCEFWL+QVSFLGHV+SK GV VDPAKIEAVT W+RPS++ EVRSFLGLAGYYR
Sbjct: 532 LYAKFSKCEFWLKQVSFLGHVISKVGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 591

Query: 121 RFVENFSRIASPLTQLTRKGTPFVWSEACEDSFQILK 157
           RFVENFSRIA+PLTQLTRKG PFVWS+ACEDSFQ LK
Sbjct: 592 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLK 628

[Close]

BLAST of PI0015487 vs. NCBI nr
Match: KAA0062112.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 279.6 bits (714), Expect = 1.6e-71
Identity = 136/157 (86.62%), Postives = 148/157 (94.27%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHENHLRKVLETLRANQ 60
           MSFGLTNAP VFMDLMNRVF++FLDTFVIVFIDDIL+YSKTEAEHENHLR VL+TLR N+
Sbjct: 770 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHENHLRMVLQTLRDNK 829

Query: 61  LFAKFSKCEFWLRQVSFLGHVVSKDGVLVDPAKIEAVTNWSRPSSI-EVRSFLGLAGYYR 120
           L+AKFSKCEFWL+QVSFLGHVVSK GV VDPAKIEAVT W+RPS++ EVRSFLGLAGYYR
Sbjct: 830 LYAKFSKCEFWLKQVSFLGHVVSKTGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 889

Query: 121 RFVENFSRIASPLTQLTRKGTPFVWSEACEDSFQILK 157
           RFVENFSRIA+PLTQLTRKG PFVWS+ACEDSFQ LK
Sbjct: 890 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLK 926

[Close]

BLAST of PI0015487 vs. NCBI nr
Match: KAA0036538.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 278.1 bits (710), Expect = 4.7e-71
Identity = 135/157 (85.99%), Postives = 148/157 (94.27%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFKDFLDTFVIVFIDDILVYSKTEAEHENHLRKVLETLRANQ 60
           MSFGLTNAPTVFMDLMNRVFKDFLD+FVIVFIDDIL+YSKTEAEHE HL +VLETLRAN+
Sbjct: 470 MSFGLTNAPTVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEKHLHQVLETLRANK 529

Query: 61  LFAKFSKCEFWLRQVSFLGHVVSKDGVLVDPAKIEAVTNWSRPSSI-EVRSFLGLAGYYR 120
           L+AKFSKCEFWLR+V+FLGHVVS + V VDPAKIEAVTNW RPS++ E+RSFLGLAGYYR
Sbjct: 530 LYAKFSKCEFWLRKVTFLGHVVSSERVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 589

Query: 121 RFVENFSRIASPLTQLTRKGTPFVWSEACEDSFQILK 157
           RFVE+FSRIASPLTQLTRKGTPFVWS ACE SFQ+LK
Sbjct: 590 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQMLK 626

[Close]

BLAST of PI0015487 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 103.2 bits (256), Expect = 1.9e-22
Identity = 50/113 (44.25%), Postives = 73/113 (64.60%), Query Frame = 0


Query: 47  NHLRKVLETLRANQLFAKFSKCEFWLRQVSFLG--HVVSKDGVLVDPAKIEAVTNWSRP- 106
           NHL  VL+    +Q +A   KC F   Q+++LG  H++S +GV  DPAK+EA+  W  P 
Sbjct: 2   NHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPK 61

Query: 107 SSIEVRSFLGLAGYYRRFVENFSRIASPLTQLTRKGTPFVWSEACEDSFQILK 157
           ++ E+R FLGL GYYRRFV+N+ +I  PLT+L +K +   W+E    +F+ LK
Sbjct: 62  NTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAFKALK 113

The following BLAST results are available for this feature:

BLAST of PI0015487 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	2.1e-26	39.01	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	8.1e-26	41.73	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	4.4e-24	37.68	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P10401	3.8e-23	32.74	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
P0CT41	7.1e-22	31.85	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of PI0015487 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TSI1	3.5e-72	86.62	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5A7V1X7	3.5e-72	86.62	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00800 PE...	[more]
A0A5A7UV42	4.5e-72	86.62	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold10...	[more]
A0A5A7V1N3	7.8e-72	86.62	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89...	[more]
A0A5A7T165	2.3e-71	85.99	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19...	[more]

BLAST of PI0015487 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060847.1	7.2e-72	86.62	pol protein [Cucumis melo var. makuwa]	[more]
KAA0046014.1	7.2e-72	86.62	gag protease polyprotein [Cucumis melo var. makuwa]	[more]
KAA0059792.1	9.4e-72	86.62	pol protein [Cucumis melo var. makuwa]	[more]
KAA0062112.1	1.6e-71	86.62	pol protein [Cucumis melo var. makuwa]	[more]
KAA0036538.1	4.7e-71	85.99	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0015487 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	1.9e-22	44.25	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..87 e-value: 1.7E-34 score: 120.6
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 92..156 e-value: 1.9E-22 score: 81.0
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 1..81 e-value: 8.1E-16 score: 58.2
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..82 score: 9.060108
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 18..156
None	No IPR available	PANTHER	PTHR24559:SF345	SUBFAMILY NOT NAMED	coord: 18..156
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..82 e-value: 4.67721E-39 score: 128.482
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0015487.1	PI0015487.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding