PI0015403 (gene) Melon (PI 482460) v1

Overview


Name	PI0015403
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon gag protein
Location	chr06: 24311639 .. 24312843 (-)
RNA-Seq Expression	PI0015403
Synteny	PI0015403

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCGTTGCCGGGGAGCTTCGGTAAGTAAAATCTTGAAACCTTTTTTTTTATTTAAAAATTCTTTTCTTAGTTTCTTGATTCTATATTCAATTTCTAAAAAAAAAAATCTTTAAAACCAAAAAAAAAAAAGAGAAAGTTAGATTTTGATTCTTTTCTCTCCCTTACTTTGTATGTCCCGCTCTTCCAATCCTCACTTAGAATTTTTTGAAGACCTTAATAGGGAAGTGCGTAGAATTAGGAGAGAAAGGAGAGAGAAATTAATCAATCAATCCCTCAAGTACCCTTAGAAAACCAAGAGCCAAATTTAGAAAACCTTGAAAGACAAAATATGGGCCAAGTTAGAGAAAAGACCCTTAGAGAACTCTCTGAGCCAGATGAAGACCAAAGACCCCTGTGTATAGTCATTCCCCCAACCACTCAACCCTTCGAGCTAAAACCTGGACTAATCCATCTTTTACCAATCTATAAGGGTAGCTCAGGGGAAGATCCTCATAAACACCTTAAGGATTTCCATATGGTTTGTGACTCTATGAGACCCCACGGAGTCTCTGAAGAACAGCTTAATCTTAGAGCCTTTCCATTTTCCTTAACCGATACAGCCAAGCGTTGGCTTTACTATTTAGAACCAGGATCTATCACAACTTGGGGAGGACTTAAAAAGAAATTCTTAGAGAAATTCTTTCCCGCTTCTAGAGCAAACAACATAAGGAAGGAAATCTATGGAATTAGACAAGCCTTTAGGAGTCTTTATCTGAATATTGGGAGCGCTTTAAGGAACTTTGCGCTAGCTTTCCCCACCATCATATTTCCGACCCCTCTTTAATACAGTATTTTTATTCTGGACTGCTAACCACGGATAGAAATACAGTAGACGCTGCAGCAGGTGGTGCCCTGGCCGATAAAACCCCTACTGAAGCAAGAGAGCTAATCTCACGGATGGCTGAAAATTCACAGAATTTTGGCAATAGAGCATTCGAGCTCGACAATTCATTGACGAAAGAGGTTAGTGAGCTTAAATCACAAATGTTAAATATGACTCAATTGCTTACTTCTTTTGTTCAAGGCGGAAATGTAAAAGTTGCCAAATGTGGAGTTTGCGGATTAATAGGACATCCTAATGACAAGTGCCCTGACCTAGTGGAAGAGGCAAATGTCATTAGGAAGTATGATCCTCAAGGAAATACTTACAATGCCGGTTGA

mRNA sequence

ATGGCGCCGTTGCCGGGGAGCTTCGGCGGAAATGTAAAAGTTGCCAAATGTGGAGTTTGCGGATTAATAGGACATCCTAATGACAAGTGCCCTGACCTAGTGGAAGAGGCAAATGTCATTAGGAAGTATGATCCTCAAGGAAATACTTACAATGCCGGTTGA

Coding sequence (CDS)

ATGGCGCCGTTGCCGGGGAGCTTCGGCGGAAATGTAAAAGTTGCCAAATGTGGAGTTTGCGGATTAATAGGACATCCTAATGACAAGTGCCCTGACCTAGTGGAAGAGGCAAATGTCATTAGGAAGTATGATCCTCAAGGAAATACTTACAATGCCGGTTGA

Protein sequence

MAPLPGSFGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAG

Homology

[Close]

BLAST of PI0015403 vs. ExPASy TrEMBL
Match: A0A5D3CRR8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00610 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.6e-13
Identity = 31/45 (68.89%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 9   GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAG 54
           G  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDP GNTYN+G
Sbjct: 152 GTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSG 196

[Close]

BLAST of PI0015403 vs. ExPASy TrEMBL
Match: A0A5D3D815 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9G00050 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.1e-13
Identity = 31/45 (68.89%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 9   GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAG 54
           G  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDP GNTYN+G
Sbjct: 67  GTPLKVTKCGVCGLVGHPNDKCPEVIEDINIVRKYDPHGNTYNSG 111

[Close]

BLAST of PI0015403 vs. ExPASy TrEMBL
Match: A0A5D3BX36 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1154G00060 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.8e-13
Identity = 31/53 (58.49%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 1  MAPLPGSFGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAG 54
          MA    SFG  +K+ KCGVCGL+GHPNDKCP+++ + N++R+Y+P GNTYN+G
Sbjct: 40 MAENSQSFGTPLKITKCGVCGLVGHPNDKCPEVIGDVNIVRRYEPHGNTYNSG 92

[Close]

BLAST of PI0015403 vs. ExPASy TrEMBL
Match: A0A5D3DFM6 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold19523G00450 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.6e-13
Identity = 30/42 (71.43%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 12  VKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAG 54
           +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDP GNTYN G
Sbjct: 149 LKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNLG 190

[Close]

BLAST of PI0015403 vs. ExPASy TrEMBL
Match: A0A5D3DCG3 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold860G00100 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.7e-13
Identity = 30/45 (66.67%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 9  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAG 54
          G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDP GNTYN+G
Sbjct: 11 GTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSG 55

[Close]

BLAST of PI0015403 vs. NCBI nr
Match: KAA0047407.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 3.4e-13
Identity = 31/45 (68.89%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 9   GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAG 54
           G  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDP GNTYN+G
Sbjct: 152 GTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSG 196

[Close]

BLAST of PI0015403 vs. NCBI nr
Match: TYK19600.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 4.4e-13
Identity = 31/45 (68.89%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 9   GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAG 54
           G  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDP GNTYN+G
Sbjct: 67  GTPLKVTKCGVCGLVGHPNDKCPEVIEDINIVRKYDPHGNTYNSG 111

[Close]

BLAST of PI0015403 vs. NCBI nr
Match: KAA0056553.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK02709.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 5.7e-13
Identity = 31/53 (58.49%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 1  MAPLPGSFGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAG 54
          MA    SFG  +K+ KCGVCGL+GHPNDKCP+++ + N++R+Y+P GNTYN+G
Sbjct: 40 MAENSQSFGTPLKITKCGVCGLVGHPNDKCPEVIGDVNIVRRYEPHGNTYNSG 92

[Close]

BLAST of PI0015403 vs. NCBI nr
Match: KAA0058350.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK22497.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 7.5e-13
Identity = 30/42 (71.43%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 12  VKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAG 54
           +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDP GNTYN G
Sbjct: 149 LKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNLG 190

[Close]

BLAST of PI0015403 vs. NCBI nr
Match: XP_016902871.1 (PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo])

HSP 1 Score: 82.8 bits (203), Expect = 9.8e-13
Identity = 30/45 (66.67%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 9  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAG 54
          G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDP GNTYN+G
Sbjct: 11 GTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSG 55

The following BLAST results are available for this feature:

BLAST of PI0015403 vs.


Match Name	E-value	Identity	Description

BLAST of PI0015403 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CRR8	1.6e-13	68.89	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3D815	2.1e-13	68.89	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3BX36	2.8e-13	58.49	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3DFM6	3.6e-13	71.43	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3DCG3	4.7e-13	66.67	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of PI0015403 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047407.1	3.4e-13	68.89	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotranspos...	[more]
TYK19600.1	4.4e-13	68.89	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0056553.1	5.7e-13	58.49	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK02709.1 retrotranspos...	[more]
KAA0058350.1	7.5e-13	71.43	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK22497.1 retrotranspos...	[more]
XP_016902871.1	9.8e-13	66.67	PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]	[more]

BLAST of PI0015403 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 7..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0015403.1	PI0015403.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding