PI0015341 (gene) Melon (PI 482460) v1

Overview


Name	PI0015341
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	ATP synthase subunit c, chloroplastic
Location	chr01: 6165719 .. 6165964 (-)
RNA-Seq Expression	PI0015341
Synteny	PI0015341

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCCACTGATTTCTGTCGCTTTCGTTATTGCTGCTGGGTTGGCCGTCAGGCTTGCTTCTATTGGACCTGGGGTTGGTCAAGGTACTGCTGCGTGCCAAGTTGTAGAAGGGATCGCAAGACAACCTGAGGCGGAGGGAAAAATCAAAGGTACTTTATTGCTTAGTCTGGCTTTTATGGAAGCTTTAACAATTTATGGACTGGTTGTAGCATTAGCACTTTTATTTACGAATCCTTTTGTTTAA

mRNA sequence

ATGAATCCACTGATTTCTGTCGCTTTCGTTATTGCTGCTGGGTTGGCCGTCAGGCTTGCTTCTATTGGACCTGGGGTTGGTCAAGGTACTGCTGCGTGCCAAGTTGTAGAAGGGATCGCAAGACAACCTGAGGCGGAGGGAAAAATCAAAGGTACTTTATTGCTTAGTCTGGCTTTTATGGAAGCTTTAACAATTTATGGACTGGTTGTAGCATTAGCACTTTTATTTACGAATCCTTTTGTTTAA

Coding sequence (CDS)

ATGAATCCACTGATTTCTGTCGCTTTCGTTATTGCTGCTGGGTTGGCCGTCAGGCTTGCTTCTATTGGACCTGGGGTTGGTCAAGGTACTGCTGCGTGCCAAGTTGTAGAAGGGATCGCAAGACAACCTGAGGCGGAGGGAAAAATCAAAGGTACTTTATTGCTTAGTCTGGCTTTTATGGAAGCTTTAACAATTTATGGACTGGTTGTAGCATTAGCACTTTTATTTACGAATCCTTTTGTTTAA

Protein sequence

MNPLISVAFVIAAGLAVRLASIGPGVGQGTAACQVVEGIARQPEAEGKIKGTLLLSLAFMEALTIYGLVVALALLFTNPFV

Homology

[Close]

BLAST of PI0015341 vs. ExPASy Swiss-Prot
Match: Q4FGF2 (ATP synthase subunit c, chloroplastic OS=Acorus americanus OX=263995 GN=atpH PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 8.2e-30
Identity = 74/81 (91.36%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MNPLISVAFVIAAGLAVRLASIGPGVGQGTAACQVVEGIARQPEAEGKIKGTLLLSLAFM 60
          MNPLIS A VIAAGLAV LASIGPGVGQGTAA Q VEGIARQPEAEGKI+GTLLLSLAFM
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFTNPFV 82
          EALTIYGLVVALALLF NPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

[Close]

BLAST of PI0015341 vs. ExPASy Swiss-Prot
Match: Q3V547 (ATP synthase subunit c, chloroplastic OS=Acorus calamus OX=4465 GN=atpH PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 8.2e-30
Identity = 74/81 (91.36%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MNPLISVAFVIAAGLAVRLASIGPGVGQGTAACQVVEGIARQPEAEGKIKGTLLLSLAFM 60
          MNPLIS A VIAAGLAV LASIGPGVGQGTAA Q VEGIARQPEAEGKI+GTLLLSLAFM
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFTNPFV 82
          EALTIYGLVVALALLF NPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

[Close]

BLAST of PI0015341 vs. ExPASy Swiss-Prot
Match: Q85FN2 (ATP synthase subunit c, chloroplastic OS=Adiantum capillus-veneris OX=13818 GN=atpH PE=2 SV=2)

HSP 1 Score: 130.6 bits (327), Expect = 8.2e-30
Identity = 74/81 (91.36%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MNPLISVAFVIAAGLAVRLASIGPGVGQGTAACQVVEGIARQPEAEGKIKGTLLLSLAFM 60
          MNPLIS A VIAAGLAV LASIGPGVGQGTAA Q VEGIARQPEAEGKI+GTLLLSLAFM
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFTNPFV 82
          EALTIYGLVVALALLF NPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

[Close]

BLAST of PI0015341 vs. ExPASy Swiss-Prot
Match: A4QJA2 (ATP synthase subunit c, chloroplastic OS=Aethionema cordifolium OX=434059 GN=atpH PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 8.2e-30
Identity = 74/81 (91.36%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MNPLISVAFVIAAGLAVRLASIGPGVGQGTAACQVVEGIARQPEAEGKIKGTLLLSLAFM 60
          MNPLIS A VIAAGLAV LASIGPGVGQGTAA Q VEGIARQPEAEGKI+GTLLLSLAFM
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFTNPFV 82
          EALTIYGLVVALALLF NPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

[Close]

BLAST of PI0015341 vs. ExPASy Swiss-Prot
Match: A4QJI6 (ATP synthase subunit c, chloroplastic OS=Aethionema grandiflorum OX=72657 GN=atpH PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 8.2e-30
Identity = 74/81 (91.36%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MNPLISVAFVIAAGLAVRLASIGPGVGQGTAACQVVEGIARQPEAEGKIKGTLLLSLAFM 60
          MNPLIS A VIAAGLAV LASIGPGVGQGTAA Q VEGIARQPEAEGKI+GTLLLSLAFM
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFTNPFV 82
          EALTIYGLVVALALLF NPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

[Close]

BLAST of PI0015341 vs. ExPASy TrEMBL
Match: K9L5P5 (ATP synthase F0 sector subunit C OS=Chrysanthemum morifolium OX=41568 GN=atpH PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.0e-27
Identity = 74/81 (91.36%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MNPLISVAFVIAAGLAVRLASIGPGVGQGTAACQVVEGIARQPEAEGKIKGTLLLSLAFM 60
          MNPLIS A VIAAGLAV LASIGPGVGQGTAA Q VEGIARQPEAEGKI+GTLLLSLAFM
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFTNPFV 82
          EALTIYGLVVALALLF NPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

[Close]

BLAST of PI0015341 vs. ExPASy TrEMBL
Match: A0A6H1XHY6 (ATP synthase subunit c, chloroplastic OS=Lycoris aurea OX=152838 GN=atpH PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.0e-27
Identity = 74/81 (91.36%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MNPLISVAFVIAAGLAVRLASIGPGVGQGTAACQVVEGIARQPEAEGKIKGTLLLSLAFM 60
          MNPLIS A VIAAGLAV LASIGPGVGQGTAA Q VEGIARQPEAEGKI+GTLLLSLAFM
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFTNPFV 82
          EALTIYGLVVALALLF NPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

[Close]

BLAST of PI0015341 vs. ExPASy TrEMBL
Match: A0A076E6X0 (ATP synthase subunit c, chloroplastic OS=Salix interior OX=75712 GN=atpH PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.0e-27
Identity = 74/81 (91.36%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MNPLISVAFVIAAGLAVRLASIGPGVGQGTAACQVVEGIARQPEAEGKIKGTLLLSLAFM 60
          MNPLIS A VIAAGLAV LASIGPGVGQGTAA Q VEGIARQPEAEGKI+GTLLLSLAFM
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFTNPFV 82
          EALTIYGLVVALALLF NPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

[Close]

BLAST of PI0015341 vs. ExPASy TrEMBL
Match: A0A7H0R0V7 (ATP synthase subunit c, chloroplastic OS=Aster flaccidus OX=1196477 GN=atpH PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.0e-27
Identity = 74/81 (91.36%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MNPLISVAFVIAAGLAVRLASIGPGVGQGTAACQVVEGIARQPEAEGKIKGTLLLSLAFM 60
          MNPLIS A VIAAGLAV LASIGPGVGQGTAA Q VEGIARQPEAEGKI+GTLLLSLAFM
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFTNPFV 82
          EALTIYGLVVALALLF NPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

[Close]

BLAST of PI0015341 vs. ExPASy TrEMBL
Match: A0A075TPW4 (ATP synthase F0 sector subunit C OS=Camellia reticulata OX=452972 GN=atpH PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.0e-27
Identity = 74/81 (91.36%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MNPLISVAFVIAAGLAVRLASIGPGVGQGTAACQVVEGIARQPEAEGKIKGTLLLSLAFM 60
          MNPLIS A VIAAGLAV LASIGPGVGQGTAA Q VEGIARQPEAEGKI+GTLLLSLAFM
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFTNPFV 82
          EALTIYGLVVALALLF NPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

[Close]

BLAST of PI0015341 vs. NCBI nr
Match: KAF3776839.1 (ATP synthase subunit alpha [Nymphaea thermarum])

HSP 1 Score: 130.6 bits (327), Expect = 6.2e-27
Identity = 74/81 (91.36%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MNPLISVAFVIAAGLAVRLASIGPGVGQGTAACQVVEGIARQPEAEGKIKGTLLLSLAFM 60
          MNPLIS A VIAAGLAV LASIGPGVGQGTAA Q VEGIARQPEAEGKI+GTLLLSLAFM
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFTNPFV 82
          EALTIYGLVVALALLF NPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

[Close]

BLAST of PI0015341 vs. NCBI nr
Match: YP_009627550.1 (ATP synthase CF0 C subunit [Allium chrysocephalum] >YP_009627808.1 ATP synthase CF0 C subunit [Allium rude] >QBO26280.1 ATP synthase CF0 C subunit [Allium chrysocephalum] >QBO26538.1 ATP synthase CF0 C subunit [Allium rude])

HSP 1 Score: 130.6 bits (327), Expect = 6.2e-27
Identity = 74/81 (91.36%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MNPLISVAFVIAAGLAVRLASIGPGVGQGTAACQVVEGIARQPEAEGKIKGTLLLSLAFM 60
          MNPLIS A VIAAGLAV LASIGPGVGQGTAA Q VEGIARQPEAEGKI+GTLLLSLAFM
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFTNPFV 82
          EALTIYGLVVALALLF NPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

[Close]

BLAST of PI0015341 vs. NCBI nr
Match: RYQ79638.1 (hypothetical protein Ahy_Scaffold2g107587 isoform B [Arachis hypogaea])

HSP 1 Score: 130.6 bits (327), Expect = 6.2e-27
Identity = 73/81 (90.12%), Postives = 76/81 (93.83%), Query Frame = 0


Query: 1  MNPLISVAFVIAAGLAVRLASIGPGVGQGTAACQVVEGIARQPEAEGKIKGTLLLSLAFM 60
          MNPLI+VA V+AAGLAV LASIGPGVGQGTAA Q VEGIARQPEAEGKI+GTLLLSLAFM
Sbjct: 1  MNPLIAVASVVAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFTNPFV 82
          EALTIYGLVVALALLF NPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

[Close]

BLAST of PI0015341 vs. NCBI nr
Match: KAD4981683.1 (hypothetical protein E3N88_18354 [Mikania micrantha])

HSP 1 Score: 130.6 bits (327), Expect = 6.2e-27
Identity = 74/81 (91.36%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1   MNPLISVAFVIAAGLAVRLASIGPGVGQGTAACQVVEGIARQPEAEGKIKGTLLLSLAFM 60
           MNPLIS A VIAAGLAV LASIGPGVGQGTAA Q VEGIARQPEAEGKI+GTLLLSLAFM
Sbjct: 93  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 152

Query: 61  EALTIYGLVVALALLFTNPFV 82
           EALTIYGLVVALALLF NPFV
Sbjct: 153 EALTIYGLVVALALLFANPFV 173

[Close]

BLAST of PI0015341 vs. NCBI nr
Match: ONK65900.1 (uncharacterized protein A4U43_C06F2130 [Asparagus officinalis])

HSP 1 Score: 130.6 bits (327), Expect = 6.2e-27
Identity = 74/81 (91.36%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1   MNPLISVAFVIAAGLAVRLASIGPGVGQGTAACQVVEGIARQPEAEGKIKGTLLLSLAFM 60
           MNPLIS A VIAAGLAV LASIGPGVGQGTAA Q VEGIARQPEAEGKI+GTLLLSLAFM
Sbjct: 137 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 196

Query: 61  EALTIYGLVVALALLFTNPFV 82
           EALTIYGLVVALALLF NPFV
Sbjct: 197 EALTIYGLVVALALLFANPFV 217

[Close]

BLAST of PI0015341 vs. TAIR 10
Match: ATCG00140.1 (ATP synthase subunit C family protein )

HSP 1 Score: 130.2 bits (326), Expect = 7.6e-31
Identity = 73/81 (90.12%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MNPLISVAFVIAAGLAVRLASIGPGVGQGTAACQVVEGIARQPEAEGKIKGTLLLSLAFM 60
          MNPL+S A VIAAGLAV LASIGPGVGQGTAA Q VEGIARQPEAEGKI+GTLLLSLAFM
Sbjct: 1  MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 61 EALTIYGLVVALALLFTNPFV 82
          EALTIYGLVVALALLF NPFV
Sbjct: 61 EALTIYGLVVALALLFANPFV 81

The following BLAST results are available for this feature:

BLAST of PI0015341 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4FGF2	8.2e-30	91.36	ATP synthase subunit c, chloroplastic OS=Acorus americanus OX=263995 GN=atpH PE=...	[more]
Q3V547	8.2e-30	91.36	ATP synthase subunit c, chloroplastic OS=Acorus calamus OX=4465 GN=atpH PE=3 SV=...	[more]
Q85FN2	8.2e-30	91.36	ATP synthase subunit c, chloroplastic OS=Adiantum capillus-veneris OX=13818 GN=a...	[more]
A4QJA2	8.2e-30	91.36	ATP synthase subunit c, chloroplastic OS=Aethionema cordifolium OX=434059 GN=atp...	[more]
A4QJI6	8.2e-30	91.36	ATP synthase subunit c, chloroplastic OS=Aethionema grandiflorum OX=72657 GN=atp...	[more]

BLAST of PI0015341 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
K9L5P5	3.0e-27	91.36	ATP synthase F0 sector subunit C OS=Chrysanthemum morifolium OX=41568 GN=atpH PE...	[more]
A0A6H1XHY6	3.0e-27	91.36	ATP synthase subunit c, chloroplastic OS=Lycoris aurea OX=152838 GN=atpH PE=3 SV...	[more]
A0A076E6X0	3.0e-27	91.36	ATP synthase subunit c, chloroplastic OS=Salix interior OX=75712 GN=atpH PE=3 SV...	[more]
A0A7H0R0V7	3.0e-27	91.36	ATP synthase subunit c, chloroplastic OS=Aster flaccidus OX=1196477 GN=atpH PE=3...	[more]
A0A075TPW4	3.0e-27	91.36	ATP synthase F0 sector subunit C OS=Camellia reticulata OX=452972 GN=atpH PE=3 S...	[more]

BLAST of PI0015341 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF3776839.1	6.2e-27	91.36	ATP synthase subunit alpha [Nymphaea thermarum]	[more]
YP_009627550.1	6.2e-27	91.36	ATP synthase CF0 C subunit [Allium chrysocephalum] >YP_009627808.1 ATP synthase ...	[more]
RYQ79638.1	6.2e-27	90.12	hypothetical protein Ahy_Scaffold2g107587 isoform B [Arachis hypogaea]	[more]
KAD4981683.1	6.2e-27	91.36	hypothetical protein E3N88_18354 [Mikania micrantha]	[more]
ONK65900.1	6.2e-27	91.36	uncharacterized protein A4U43_C06F2130 [Asparagus officinalis]	[more]

BLAST of PI0015341 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00140.1	7.6e-31	90.12	ATP synthase subunit C family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000454	ATP synthase, F0 complex, subunit C	PRINTS	PR00124	ATPASEC	coord: 12..31 score: 39.61 coord: 33..48 score: 39.03 coord: 50..75 score: 43.51
IPR000454	ATP synthase, F0 complex, subunit C	PANTHER	PTHR10031	ATP SYNTHASE LIPID-BINDING PROTEIN, MITOCHONDRIAL	coord: 1..81
IPR000454	ATP synthase, F0 complex, subunit C	HAMAP	MF_01396	ATP_synth_c_bact	coord: 10..75 score: 14.23356
IPR005953	ATP synthase, F0 complex, subunit C, bacterial/chloroplast	TIGRFAM	TIGR01260	TIGR01260	coord: 20..76 e-value: 3.9E-18 score: 63.2
IPR038662	F1F0 ATP synthase subunit C superfamily	GENE3D	1.20.20.10	F1F0 ATP synthase subunit C	coord: 1..78 e-value: 1.0E-28 score: 101.3
IPR002379	V-ATPase proteolipid subunit C-like domain	PFAM	PF00137	ATP-synt_C	coord: 11..73 e-value: 1.9E-16 score: 60.1
None	No IPR available	PANTHER	PTHR10031:SF39	ATP SYNTHASE SUBUNIT C, CHLOROPLASTIC	coord: 1..81
None	No IPR available	CDD	cd18183	ATP-synt_Fo_c_ATPH	coord: 4..78 e-value: 4.22721E-30 score: 99.5305
IPR020537	ATP synthase, F0 complex, subunit C, DCCD-binding site	PROSITE	PS00605	ATPASE_C	coord: 40..61
IPR035921	F/V-ATP synthase subunit C superfamily	SUPERFAMILY	81333	F1F0 ATP synthase subunit C	coord: 4..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0015341.1	PI0015341.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0006412	translation
biological_process	GO:1902600	proton transmembrane transport
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component	GO:0005840	ribosome
cellular_component	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain
molecular_function	GO:0008289	lipid binding
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0015078	proton transmembrane transporter activity