PI0015256 (gene) Melon (PI 482460) v1

Overview


Name	PI0015256
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	SKP1-like protein
Location	chr01: 5207654 .. 5209492 (-)
RNA-Seq Expression	PI0015256
Synteny	PI0015256

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACGCGTAGTAGAAAAAATGAAATAAAATAACTGTCACGTGAAACGTCATCGTTTCTTAAGAGAAAAAGGTAAAAAGAAAAAGAAAAAAGGAAAGAAAATCCACTATATAAAGGAATCGGTCAGTCTTCAATTCCTCATTCTTCACTTTTTGAATCATTCGAATCGTCGCTTGTCAGTTAGGGTTTCTTCATATTCCCAAAATCGGAAATAAACCATCGATCAAATTCTCTCAACACATACACAATGTCGTCGTCTAAGAAGATCGTCCTCAGGAGTTCCGACGGCGAAACCTTTGACGTCGACGAAATCGTCGCCGTCGAGTCTCAGACCATCAAGCACATGATCGAAGACGATTGCGCTGACACTGTTATTCCCTTGCCTAATGTCACCAGTGCCATTCTTTCTAAGGTAATTGAGTACTGTAAGATGCATGTTGAGACCGATGATAAAGATTCTAAAGCCATTGATGATACTCTCAAAACCTGGGATGCTGAATTTGTCAAGGTCGATCAAAATACCCTCTTTGATCTCATCTTGGTGAGTTCTTTTTTTCCTACTCTCTTTGGAATTATGAAATTCATGGTGTTTCTATGTGAACTTGATTTTTCTTGGTGCTCTGTTTTATTCTGTCGATAATTTGGGGATTTTGGATTGTTATTTGATGATGTTTTTTCATGCTCTGTCCTTTTCTCGTTCCTTCTACGAATTAGCTATCTATCTTTGCGATTTCTTTTGTTGATTGGATGATCTTGCATCCTTGTTTTAGAAAGAACCGTGGAATTGAAGAGTACTCAATCAATGAATCACTTAGGCCCGTTTGGTTAATCTTCTTGGTTTTTGAAAACTAAGCCTATTTCATCTCATTTTCTTACGTTTGCATCTTTAGTGTCGAATTCTTGGCCAAATTTCAAATTCTAAATAAACTTTTTTTTTTTTTTTTTTTGTAGTGTTCAAAATTTGACTTGGTTTTTGAAACAATCAAGAAATTTAGAGGTGGAAAAAGTATTAGAAAATTATAAGCAAGATGATGATAACCAAATAGGAATTAGTTGATCATGTTTCTTTGGGATGGTATGTTTGGTTGATTATTCTAACATGATTTAGGAGGCCAAACTTCAAAGGGTCCTTTCCATTTTGCTGTATTTTATTGGATTAGGCAACAATCATCAAATTGGTTTAAGCCCATTAAACCCTTTCCCTCAAATTTCTTATTGATTAGGAGTAGCAAAGGATGGTTCTATCAAAAGTGGAATTCCTCAGTTACAAATCATATCAAATTGGTTCTTTAATGTCTCCACAGCATTTTGTTTATGAGAGTTATTCTATAACACAACACAACTAATATTTGTTGTATAAATTTTCTATACATGGGTCTTTTTTTTTCATTGCTGGTTATGGATTATAATGGGTGTTTTTTTTTTTTTTTGGGTGCTCCCAAAATCAGGCTGCTAACTATCTGAACATCAAGAGTCTACTGGATCTAACATGCCAGACAGTGGCAGACATGATCAAAGGAAAGACACCAGAGGAGATTAGAAAGACATTCAACATCAAGAATGATTTTACTCCAGAGGAGGAAGAGGAGGTTCGAAGGGAGAATCAATGGGCCTTCGAGTAATAATACAGTCATTTTTAATTTGATTCTATAATAGTAATTAATTAATGTCTTTGTAATGTCTATAGATTTTAGGGAAGTTTGACTCTTTTCTTTTCACTTTCTGGGATGCTCTAAGTTGTAATTTTTATCTCTTATTATGGAAGATCGATATCTAGTTTCTGTGGATTTCATTTACTTTTCTTTTGAGGCCAATGTCTCCATACTATCATCTTTAACCTTA

mRNA sequence

CACGCGTAGTAGAAAAAATGAAATAAAATAACTGTCACGTGAAACGTCATCGTTTCTTAAGAGAAAAAGGTAAAAAGAAAAAGAAAAAAGGAAAGAAAATCCACTATATAAAGGAATCGGTCAGTCTTCAATTCCTCATTCTTCACTTTTTGAATCATTCGAATCGTCGCTTGTCAGTTAGGGTTTCTTCATATTCCCAAAATCGGAAATAAACCATCGATCAAATTCTCTCAACACATACACAATGTCGTCGTCTAAGAAGATCGTCCTCAGGAGTTCCGACGGCGAAACCTTTGACGTCGACGAAATCGTCGCCGTCGAGTCTCAGACCATCAAGCACATGATCGAAGACGATTGCGCTGACACTGTTATTCCCTTGCCTAATGTCACCAGTGCCATTCTTTCTAAGGTAATTGAGTACTGTAAGATGCATGTTGAGACCGATGATAAAGATTCTAAAGCCATTGATGATACTCTCAAAACCTGGGATGCTGAATTTGTCAAGGTCGATCAAAATACCCTCTTTGATCTCATCTTGGCTGCTAACTATCTGAACATCAAGAGTCTACTGGATCTAACATGCCAGACAGTGGCAGACATGATCAAAGGAAAGACACCAGAGGAGATTAGAAAGACATTCAACATCAAGAATGATTTTACTCCAGAGGAGGAAGAGGAGGTTCGAAGGGAGAATCAATGGGCCTTCGAGTAATAATACAGTCATTTTTAATTTGATTCTATAATAGTAATTAATTAATGTCTTTGTAATGTCTATAGATTTTAGGGAAGTTTGACTCTTTTCTTTTCACTTTCTGGGATGCTCTAAGTTGTAATTTTTATCTCTTATTATGGAAGATCGATATCTAGTTTCTGTGGATTTCATTTACTTTTCTTTTGAGGCCAATGTCTCCATACTATCATCTTTAACCTTA

Coding sequence (CDS)

ATGTCGTCGTCTAAGAAGATCGTCCTCAGGAGTTCCGACGGCGAAACCTTTGACGTCGACGAAATCGTCGCCGTCGAGTCTCAGACCATCAAGCACATGATCGAAGACGATTGCGCTGACACTGTTATTCCCTTGCCTAATGTCACCAGTGCCATTCTTTCTAAGGTAATTGAGTACTGTAAGATGCATGTTGAGACCGATGATAAAGATTCTAAAGCCATTGATGATACTCTCAAAACCTGGGATGCTGAATTTGTCAAGGTCGATCAAAATACCCTCTTTGATCTCATCTTGGCTGCTAACTATCTGAACATCAAGAGTCTACTGGATCTAACATGCCAGACAGTGGCAGACATGATCAAAGGAAAGACACCAGAGGAGATTAGAAAGACATTCAACATCAAGAATGATTTTACTCCAGAGGAGGAAGAGGAGGTTCGAAGGGAGAATCAATGGGCCTTCGAGTAA

Protein sequence

MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSAILSKVIEYCKMHVETDDKDSKAIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE

Homology

[Close]

BLAST of PI0015256 vs. ExPASy Swiss-Prot
Match: Q9FHW7 (SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 1.7e-63
Identity = 127/171 (74.27%), Postives = 138/171 (80.70%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSAILSKVIEYC 60
           MS+ +KI L+SSDGE F++DE VA+ESQTIKHMIEDDC D  IPLPNVTS ILSKVIEYC
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  KMHVETDDKD----------------SKAIDDTLKTWDAEFVKVDQNTLFDLILAANYLN 120
           K HVE  +K                 S + D+ LKTWD+EF+KVDQ TLFDLILAANYLN
Sbjct: 61  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLN 120

Query: 121 IKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           IK LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of PI0015256 vs. ExPASy Swiss-Prot
Match: Q39255 (SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.2e-61
Identity = 120/159 (75.47%), Postives = 137/159 (86.16%), Query Frame = 0


Query: 3   SSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSAILSKVIEYCKM 62
           S+KKIVL+SSDGE+F+V+E VA+ESQTI HM+EDDC D  +PLPNVTS IL+KVIEYCK 
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63  HVETDDKDSKAI------DDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTV 122
           HVE     ++A+      DD LK WDA+F+K+DQ TLF+LILAANYLNIK+LLDLTCQTV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 123 ADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           ADMIKGKTPEEIR TFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of PI0015256 vs. ExPASy Swiss-Prot
Match: Q6PL11 (SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 9.4e-59
Identity = 123/166 (74.10%), Postives = 130/166 (78.31%), Query Frame = 0


Query: 5   KKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSAILSKVIEYCKMHV 64
           K I L+SSDGE F+V+E VA+ESQTI+HMIEDDCAD  IPLPNV S ILSKVIEYC  HV
Sbjct: 8   KMITLKSSDGEEFEVEEAVAMESQTIRHMIEDDCADNGIPLPNVNSKILSKVIEYCNKHV 67

Query: 65  E-TDDKDSKAIDDT--------------LKTWDAEFVKVDQNTLFDLILAANYLNIKSLL 124
                  SKA DD               LK WDA+FVKVDQ TLFDLILAANYLNIK LL
Sbjct: 68  HAAAAAASKAADDAASAAAAVPPPSGEDLKNWDADFVKVDQATLFDLILAANYLNIKGLL 127

Query: 125 DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEE+RRENQWAFE
Sbjct: 128 DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEIRRENQWAFE 173

[Close]

BLAST of PI0015256 vs. ExPASy Swiss-Prot
Match: Q651E8 (SKP1-like protein 20 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP20 PE=1 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.1e-58
Identity = 122/165 (73.94%), Postives = 134/165 (81.21%), Query Frame = 0


Query: 7   IVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSAILSKVIEYCKMHVE- 66
           I LRS +G+ F+V E VA+ESQTI+HMIED CADT IPLPNV++ ILSKVIEYC  HVE 
Sbjct: 11  ITLRSCEGQVFEVAEAVAMESQTIRHMIEDKCADTGIPLPNVSAKILSKVIEYCSKHVEA 70

Query: 67  ------TDDKD---------SKAIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLD 126
                   D D         +KA++D LKT+DAEFVKVDQ+TLFDLILAANYLNIK LLD
Sbjct: 71  RGGAAAAADGDAPAPAAVEANKAVEDELKTFDAEFVKVDQSTLFDLILAANYLNIKGLLD 130

Query: 127 LTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           LTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 131 LTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 175

[Close]

BLAST of PI0015256 vs. ExPASy Swiss-Prot
Match: Q9LNT9 (SKP1-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=ASK4 PE=1 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.8e-55
Identity = 112/160 (70.00%), Postives = 130/160 (81.25%), Query Frame = 0


Query: 3   SSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSAILSKVIEYCKM 62
           + K I+L+SSDGE+F+++E VAV+SQTIKHMIEDDCAD  IPLPNVT AIL+KVIEYCK 
Sbjct: 4   TKKMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKK 63

Query: 63  HVET-----DDKD--SKAIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQT 122
           HVE       DKD    A +D LK WD+EFVKVDQ TLFDLILAANYLNI  LLDLTC+ 
Sbjct: 64  HVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKA 123

Query: 123 VADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           VAD ++GKTPE++R  FNIKND+TPEEE EVR EN+WAFE
Sbjct: 124 VADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

[Close]

BLAST of PI0015256 vs. ExPASy TrEMBL
Match: A0A0A0K4P4 (SKP1-like protein OS=Cucumis sativus OX=3659 GN=Csa_7G012950 PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.5e-78
Identity = 154/155 (99.35%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSAILSKVIEYC 60
           MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSAILSKVIEYC
Sbjct: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSAILSKVIEYC 60

Query: 61  KMHVETDDKDSKAIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           KMHVETDDKDSK IDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI
Sbjct: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of PI0015256 vs. ExPASy TrEMBL
Match: A0A5A7U3D8 (SKP1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00540 PE=3 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 9.4e-78
Identity = 152/155 (98.06%), Postives = 153/155 (98.71%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSAILSKVIEYC 60
           MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDC DTVIPLPNVTSAILSKV+EYC
Sbjct: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYC 60

Query: 61  KMHVETDDKDSKAIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           KMHVETDDKDSK IDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI
Sbjct: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of PI0015256 vs. ExPASy TrEMBL
Match: A0A1S3BI15 (SKP1-like protein OS=Cucumis melo OX=3656 GN=LOC103490282 PE=3 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 9.4e-78
Identity = 152/155 (98.06%), Postives = 153/155 (98.71%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSAILSKVIEYC 60
           MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDC DTVIPLPNVTSAILSKV+EYC
Sbjct: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYC 60

Query: 61  KMHVETDDKDSKAIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           KMHVETDDKDSK IDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI
Sbjct: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of PI0015256 vs. ExPASy TrEMBL
Match: A0A6J1C297 (SKP1-like protein OS=Momordica charantia OX=3673 GN=LOC111007712 PE=3 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.4e-73
Identity = 143/155 (92.26%), Postives = 150/155 (96.77%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSAILSKVIEYC 60
           MSSSKKIVL+SSDGETF+V+E VAVESQTIKHMIEDDCAD VIPLPNV SAIL+KVIEYC
Sbjct: 1   MSSSKKIVLKSSDGETFEVEEAVAVESQTIKHMIEDDCADNVIPLPNVNSAILAKVIEYC 60

Query: 61  KMHVETDDKDSKAIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           K HVETDDKDSKA+DD+LKTWDAE+VKVDQNTLFDLILAANYLNIK LLDLTCQTVADMI
Sbjct: 61  KKHVETDDKDSKAVDDSLKTWDAEYVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of PI0015256 vs. ExPASy TrEMBL
Match: A0A6J1EKE0 (SKP1-like protein OS=Cucurbita moschata OX=3662 GN=LOC111435156 PE=3 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 7.2e-70
Identity = 138/155 (89.03%), Postives = 147/155 (94.84%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSAILSKVIEYC 60
           MSSSK IVLRSSDGETF +DE VA+ESQTIK+MIEDDCADTVIP+PNVT +IL++VIEYC
Sbjct: 1   MSSSKVIVLRSSDGETFHIDEAVALESQTIKYMIEDDCADTVIPVPNVTGSILARVIEYC 60

Query: 61  KMHVETDDKDSKAIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           K HVETD KDSKA+DDTLK WDAEFVKVDQN LFDLILAANYL+IKSLLDLTCQTVADMI
Sbjct: 61  KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of PI0015256 vs. NCBI nr
Match: XP_004144851.1 (SKP1-like protein 1B [Cucumis sativus])

HSP 1 Score: 301.2 bits (770), Expect = 5.1e-78
Identity = 154/155 (99.35%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSAILSKVIEYC 60
           MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSAILSKVIEYC
Sbjct: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSAILSKVIEYC 60

Query: 61  KMHVETDDKDSKAIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           KMHVETDDKDSK IDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI
Sbjct: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of PI0015256 vs. NCBI nr
Match: XP_008447950.1 (PREDICTED: SKP1-like protein 1B [Cucumis melo] >KAA0049758.1 SKP1-like protein 1B [Cucumis melo var. makuwa] >TYK12120.1 SKP1-like protein 1B [Cucumis melo var. makuwa])

HSP 1 Score: 299.3 bits (765), Expect = 1.9e-77
Identity = 152/155 (98.06%), Postives = 153/155 (98.71%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSAILSKVIEYC 60
           MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDC DTVIPLPNVTSAILSKV+EYC
Sbjct: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYC 60

Query: 61  KMHVETDDKDSKAIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           KMHVETDDKDSK IDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI
Sbjct: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of PI0015256 vs. NCBI nr
Match: XP_022135870.1 (SKP1-like protein 1B [Momordica charantia])

HSP 1 Score: 284.6 bits (727), Expect = 4.9e-73
Identity = 143/155 (92.26%), Postives = 150/155 (96.77%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSAILSKVIEYC 60
           MSSSKKIVL+SSDGETF+V+E VAVESQTIKHMIEDDCAD VIPLPNV SAIL+KVIEYC
Sbjct: 1   MSSSKKIVLKSSDGETFEVEEAVAVESQTIKHMIEDDCADNVIPLPNVNSAILAKVIEYC 60

Query: 61  KMHVETDDKDSKAIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           K HVETDDKDSKA+DD+LKTWDAE+VKVDQNTLFDLILAANYLNIK LLDLTCQTVADMI
Sbjct: 61  KKHVETDDKDSKAVDDSLKTWDAEYVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of PI0015256 vs. NCBI nr
Match: KAG7015279.1 (SKP1-like protein 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 273.9 bits (699), Expect = 8.7e-70
Identity = 139/155 (89.68%), Postives = 146/155 (94.19%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSAILSKVIEYC 60
           MSSSK IVLRSSDGE F +DE VA+ESQTIKHMIEDDCADTVIP+PNVT +IL+KVIEYC
Sbjct: 1   MSSSKMIVLRSSDGEIFHMDEAVALESQTIKHMIEDDCADTVIPVPNVTGSILAKVIEYC 60

Query: 61  KMHVETDDKDSKAIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           K HVETD KDSKA+DDTLK WDAEFVKVDQN LFDLILAANYL+IKSLLDLTCQTVADMI
Sbjct: 61  KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of PI0015256 vs. NCBI nr
Match: XP_023529806.1 (SKP1-like protein 1A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 273.1 bits (697), Expect = 1.5e-69
Identity = 138/155 (89.03%), Postives = 146/155 (94.19%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSAILSKVIEYC 60
           MSSSK I+LRSSDGETF +DE VA+ESQTIKHMIEDDCADTVIP+PNVT +IL+ VIEYC
Sbjct: 1   MSSSKVILLRSSDGETFHIDEAVALESQTIKHMIEDDCADTVIPVPNVTGSILAMVIEYC 60

Query: 61  KMHVETDDKDSKAIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           K HVETD KDSKA+DDTLK WDAEFVKVDQN LFDLILAANYL+IKSLLDLTCQTVADMI
Sbjct: 61  KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of PI0015256 vs. TAIR 10
Match: AT5G42190.1 (E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein )

HSP 1 Score: 243.4 bits (620), Expect = 1.2e-64
Identity = 127/171 (74.27%), Postives = 138/171 (80.70%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSAILSKVIEYC 60
           MS+ +KI L+SSDGE F++DE VA+ESQTIKHMIEDDC D  IPLPNVTS ILSKVIEYC
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  KMHVETDDKD----------------SKAIDDTLKTWDAEFVKVDQNTLFDLILAANYLN 120
           K HVE  +K                 S + D+ LKTWD+EF+KVDQ TLFDLILAANYLN
Sbjct: 61  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLN 120

Query: 121 IKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           IK LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of PI0015256 vs. TAIR 10
Match: AT1G75950.1 (S phase kinase-associated protein 1 )

HSP 1 Score: 237.3 bits (604), Expect = 8.4e-63
Identity = 120/159 (75.47%), Postives = 137/159 (86.16%), Query Frame = 0


Query: 3   SSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSAILSKVIEYCKM 62
           S+KKIVL+SSDGE+F+V+E VA+ESQTI HM+EDDC D  +PLPNVTS IL+KVIEYCK 
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63  HVETDDKDSKAI------DDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTV 122
           HVE     ++A+      DD LK WDA+F+K+DQ TLF+LILAANYLNIK+LLDLTCQTV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 123 ADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           ADMIKGKTPEEIR TFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of PI0015256 vs. TAIR 10
Match: AT1G20140.1 (SKP1-like 4 )

HSP 1 Score: 216.1 bits (549), Expect = 2.0e-56
Identity = 112/160 (70.00%), Postives = 130/160 (81.25%), Query Frame = 0


Query: 3   SSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSAILSKVIEYCKM 62
           + K I+L+SSDGE+F+++E VAV+SQTIKHMIEDDCAD  IPLPNVT AIL+KVIEYCK 
Sbjct: 4   TKKMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKK 63

Query: 63  HVET-----DDKD--SKAIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQT 122
           HVE       DKD    A +D LK WD+EFVKVDQ TLFDLILAANYLNI  LLDLTC+ 
Sbjct: 64  HVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKA 123

Query: 123 VADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           VAD ++GKTPE++R  FNIKND+TPEEE EVR EN+WAFE
Sbjct: 124 VADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

[Close]

BLAST of PI0015256 vs. TAIR 10
Match: AT2G25700.1 (SKP1-like 3 )

HSP 1 Score: 206.1 bits (523), Expect = 2.1e-53
Identity = 107/160 (66.88%), Postives = 125/160 (78.12%), Query Frame = 0


Query: 3   SSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSAILSKVIEYCKM 62
           + K I+L+SSDGE+F+V+E VAVESQTIKHMIEDDC D  IPLPNVT AIL+KVIEYCK 
Sbjct: 4   TKKMIILKSSDGESFEVEEAVAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVIEYCKK 63

Query: 63  HVET-----DDKD--SKAIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQT 122
           HVE       DKD      +  LKTWD +FVKVD  TLFDL+ AANYLNI  LLDLTC+ 
Sbjct: 64  HVEAAAEAGGDKDFYGSTENHELKTWDNDFVKVDHPTLFDLLRAANYLNISGLLDLTCKA 123

Query: 123 VADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           VAD ++GKTP ++R+ FNIKND+TPEEE EVR EN+WAFE
Sbjct: 124 VADQMRGKTPAQMREHFNIKNDYTPEEEAEVRNENRWAFE 163

[Close]

BLAST of PI0015256 vs. TAIR 10
Match: AT4G34210.1 (SKP1-like 11 )

HSP 1 Score: 204.1 bits (518), Expect = 7.9e-53
Identity = 105/153 (68.63%), Postives = 125/153 (81.70%), Query Frame = 0


Query: 3   SSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSAILSKVIEYCKM 62
           SSK IVL SSDG++F+V+E VA++SQTI HM+EDDC    IPL NV S IL KVIEYCK 
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  HVETDDKDSKAIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMIKG 122
           H    D+ +   ++ L  WD +F+ ++Q+T+F+LILAANYLNIKSLLDLTCQTVADMIKG
Sbjct: 62  H--HVDEANPISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKG 121

Query: 123 KTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KTPEEIR TFNI+NDFTPEEEE VR+ENQWAFE
Sbjct: 122 KTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

The following BLAST results are available for this feature:

BLAST of PI0015256 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FHW7	1.7e-63	74.27	SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1	[more]
Q39255	1.2e-61	75.47	SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1	[more]
Q6PL11	9.4e-59	74.10	SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1	[more]
Q651E8	2.1e-58	73.94	SKP1-like protein 20 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP20 PE=1 SV=1	[more]
Q9LNT9	2.8e-55	70.00	SKP1-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=ASK4 PE=1 SV=1	[more]

BLAST of PI0015256 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4P4	2.5e-78	99.35	SKP1-like protein OS=Cucumis sativus OX=3659 GN=Csa_7G012950 PE=3 SV=1	[more]
A0A5A7U3D8	9.4e-78	98.06	SKP1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00...	[more]
A0A1S3BI15	9.4e-78	98.06	SKP1-like protein OS=Cucumis melo OX=3656 GN=LOC103490282 PE=3 SV=1	[more]
A0A6J1C297	2.4e-73	92.26	SKP1-like protein OS=Momordica charantia OX=3673 GN=LOC111007712 PE=3 SV=1	[more]
A0A6J1EKE0	7.2e-70	89.03	SKP1-like protein OS=Cucurbita moschata OX=3662 GN=LOC111435156 PE=3 SV=1	[more]

BLAST of PI0015256 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144851.1	5.1e-78	99.35	SKP1-like protein 1B [Cucumis sativus]	[more]
XP_008447950.1	1.9e-77	98.06	PREDICTED: SKP1-like protein 1B [Cucumis melo] >KAA0049758.1 SKP1-like protein 1...	[more]
XP_022135870.1	4.9e-73	92.26	SKP1-like protein 1B [Momordica charantia]	[more]
KAG7015279.1	8.7e-70	89.68	SKP1-like protein 4 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023529806.1	1.5e-69	89.03	SKP1-like protein 1A [Cucurbita pepo subsp. pepo]	[more]

BLAST of PI0015256 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42190.1	1.2e-64	74.27	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein	[more]
AT1G75950.1	8.4e-63	75.47	S phase kinase-associated protein 1	[more]
AT1G20140.1	2.0e-56	70.00	SKP1-like 4	[more]
AT2G25700.1	2.1e-53	66.88	SKP1-like 3	[more]
AT4G34210.1	7.9e-53	68.63	SKP1-like 11	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001232	S-phase kinase-associated protein 1-like	SMART	SM00512	skp1_3	coord: 4..105 e-value: 4.0E-50 score: 182.5
IPR016073	SKP1 component, POZ domain	PFAM	PF03931	Skp1_POZ	coord: 5..64 e-value: 7.0E-28 score: 96.6
IPR011333	SKP1/BTB/POZ domain superfamily	GENE3D	3.30.710.10	Potassium Channel Kv1.1; Chain A	coord: 1..155 e-value: 4.4E-73 score: 246.7
IPR011333	SKP1/BTB/POZ domain superfamily	SUPERFAMILY	54695	POZ domain	coord: 6..67
IPR016897	S-phase kinase-associated protein 1	PIRSF	PIRSF028729	SCF_Skp	coord: 1..155 e-value: 4.8E-66 score: 219.6
IPR016897	S-phase kinase-associated protein 1	PANTHER	PTHR11165	SKP1	coord: 1..155
IPR016072	SKP1 component, dimerisation	PFAM	PF01466	Skp1	coord: 106..153 e-value: 1.9E-30 score: 104.6
None	No IPR available	PANTHER	PTHR11165:SF145	PUTATIVE-RELATED	coord: 1..155
None	No IPR available	CDD	cd18322	BTB_POZ_SKP1	coord: 6..120 e-value: 1.96981E-58 score: 175.858
IPR036296	SKP1-like, dimerisation domain superfamily	SUPERFAMILY	81382	Skp1 dimerisation domain-like	coord: 78..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0015256.1	PI0015256.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0097602	cullin family protein binding
molecular_function	GO:0016301	kinase activity