PI0015098 (gene) Melon (PI 482460) v1

Overview
NamePI0015098
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr06: 13155680 .. 13155910 (-)
RNA-Seq ExpressionPI0015098
SyntenyPI0015098
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTTAATGCAAGTTAATGCCACAGACGGTTCAATTCACGCGGTGAAGCAGTTGAAGGAGATAGGATGTATGGGATGCAGTAGACCTCATACCACGGACGCATGCCTACAAAATATTGAAACTATTGCATTCATAAAAAATGACTCATACTCCAACACCTACAATCTTGGTTGGAGGAATCACTGCAATTTTGGATACAGAGGATATGGTCAACAACAACAAGGGTGA

mRNA sequence

ATGGCCTTAATGCAAGTTAATGCCACAGACGGTTCAATTCACGCGGTGAAGCAGTTGAAGGAGATAGGATGTATGGGATGCAGTAGACCTCATACCACGGACGCATGCCTACAAAATATTGAAACTATTGCATTCATAAAAAATGACTCATACTCCAACACCTACAATCTTGGTTGGAGGAATCACTGCAATTTTGGATACAGAGGATATGGTCAACAACAACAAGGGTGA

Coding sequence (CDS)

ATGGCCTTAATGCAAGTTAATGCCACAGACGGTTCAATTCACGCGGTGAAGCAGTTGAAGGAGATAGGATGTATGGGATGCAGTAGACCTCATACCACGGACGCATGCCTACAAAATATTGAAACTATTGCATTCATAAAAAATGACTCATACTCCAACACCTACAATCTTGGTTGGAGGAATCACTGCAATTTTGGATACAGAGGATATGGTCAACAACAACAAGGGTGA

Protein sequence

MALMQVNATDGSIHAVKQLKEIGCMGCSRPHTTDACLQNIETIAFIKNDSYSNTYNLGWRNHCNFGYRGYGQQQQG
Homology
BLAST of PI0015098 vs. ExPASy TrEMBL
Match: A0A5A7VE68 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2119G00330 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 5.0e-16
Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = 0

Query: 1  MALMQVNATDGSIHAVKQLKEIGCMGCSRPHTTDACLQNIETIAFIKNDSYSNTYNLGWR 60
          M L++VN     +H V+Q+ E+GC+GC  PH TD C QN ET+A++KND Y NTYN GWR
Sbjct: 18 MTLVKVNDAKSFVHVVQQVVELGCVGCGGPHNTDTCPQNTETVAYVKNDPYLNTYNAGWR 77

Query: 61 NHCNFGY 68
          NH NF +
Sbjct: 78 NHLNFSW 84

BLAST of PI0015098 vs. ExPASy TrEMBL
Match: A0A5A7UTC1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76994G00070 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 7.2e-15
Identity = 40/76 (52.63%), Postives = 48/76 (63.16%), Query Frame = 0

Query: 1  MALMQVNATDGSIHAVKQLKEIGCMGCSRPHTTDACLQNIETIAFIKNDSYSNTYNLGWR 60
          M L QVN    S+H VK + E+ C+GCS  + TD C  N + I + KND YSNTYN GWR
Sbjct: 18 MVLAQVNVVSSSVHVVKHVAEMDCVGCSGSYNTDVCPFNTKMITYAKNDPYSNTYNGGWR 77

Query: 61 NHCNFGYRGYGQQQQG 77
          NH NF + G GQ  QG
Sbjct: 78 NHSNFSWGGTGQDNQG 93

BLAST of PI0015098 vs. ExPASy TrEMBL
Match: A0A5A7UG80 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold437G001150 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.7e-14
Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = 0

Query: 16 VKQLKEIGCMGCSRPHTTDACLQNIETIAFIKNDSYSNTYNLGWRNHCNFGYRGYGQ 73
          + +++EIGC+GCS  HT DACL NIETI ++KND YSNTYN GWR+H NF + G GQ
Sbjct: 1  MNEVEEIGCVGCSSLHTIDACLLNIETITYVKNDPYSNTYNAGWRDHLNFSWGGQGQ 57

BLAST of PI0015098 vs. ExPASy TrEMBL
Match: A0A5D3BKZ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00110 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.7e-14
Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 0

Query: 16 VKQLKEIGCMGCSRPHTTDACLQNIETIAFIKNDSYSNTYNLGWRNHCNFGYRGYGQ 73
          + +++EIGC+GCS  HT DACL NIETI ++KND YSNTYN GWR H NF + G GQ
Sbjct: 1  MNEVEEIGCVGCSNLHTIDACLLNIETITYVKNDPYSNTYNAGWREHLNFSWGGQGQ 57

BLAST of PI0015098 vs. ExPASy TrEMBL
Match: A0A5D3CSC7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1610G00360 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 6.8e-13
Identity = 37/65 (56.92%), Postives = 44/65 (67.69%), Query Frame = 0

Query: 1   MALMQVNATDGSIHAVKQLKEIGCMGCSRPHTTDACLQNIETIAFIKNDSYSNTYNLGWR 60
           M  +QVNA   S  +VKQ+ EIGCM    PH  DAC  NIE +A++K+D YSNTYN  WR
Sbjct: 85  MVFLQVNAASSSFQSVKQVDEIGCMRFGSPHKIDACPLNIEIVAYVKHDPYSNTYNPRWR 144

Query: 61  NHCNF 66
           NH NF
Sbjct: 145 NHPNF 149

BLAST of PI0015098 vs. NCBI nr
Match: KAA0066652.1 (uncharacterized protein E6C27_scaffold979G00840 [Cucumis melo var. makuwa] >TYK04095.1 uncharacterized protein E5676_scaffold2119G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 1.0e-15
Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = 0

Query: 1  MALMQVNATDGSIHAVKQLKEIGCMGCSRPHTTDACLQNIETIAFIKNDSYSNTYNLGWR 60
          M L++VN     +H V+Q+ E+GC+GC  PH TD C QN ET+A++KND Y NTYN GWR
Sbjct: 18 MTLVKVNDAKSFVHVVQQVVELGCVGCGGPHNTDTCPQNTETVAYVKNDPYLNTYNAGWR 77

Query: 61 NHCNFGY 68
          NH NF +
Sbjct: 78 NHLNFSW 84

BLAST of PI0015098 vs. NCBI nr
Match: KAA0058408.1 (uncharacterized protein E6C27_scaffold409G001200 [Cucumis melo var. makuwa] >TYK04705.1 uncharacterized protein E5676_scaffold76994G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 1.5e-14
Identity = 40/76 (52.63%), Postives = 48/76 (63.16%), Query Frame = 0

Query: 1  MALMQVNATDGSIHAVKQLKEIGCMGCSRPHTTDACLQNIETIAFIKNDSYSNTYNLGWR 60
          M L QVN    S+H VK + E+ C+GCS  + TD C  N + I + KND YSNTYN GWR
Sbjct: 18 MVLAQVNVVSSSVHVVKHVAEMDCVGCSGSYNTDVCPFNTKMITYAKNDPYSNTYNGGWR 77

Query: 61 NHCNFGYRGYGQQQQG 77
          NH NF + G GQ  QG
Sbjct: 78 NHSNFSWGGTGQDNQG 93

BLAST of PI0015098 vs. NCBI nr
Match: TYJ99639.1 (hypothetical protein E5676_scaffold562G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 9.7e-14
Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 0

Query: 16 VKQLKEIGCMGCSRPHTTDACLQNIETIAFIKNDSYSNTYNLGWRNHCNFGYRGYGQ 73
          + +++EIGC+GCS  HT DACL NIETI ++KND YSNTYN GWR H NF + G GQ
Sbjct: 1  MNEVEEIGCVGCSNLHTIDACLLNIETITYVKNDPYSNTYNAGWREHLNFSWGGQGQ 57

BLAST of PI0015098 vs. NCBI nr
Match: KAA0054822.1 (hypothetical protein E6C27_scaffold437G001150 [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 9.7e-14
Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = 0

Query: 16 VKQLKEIGCMGCSRPHTTDACLQNIETIAFIKNDSYSNTYNLGWRNHCNFGYRGYGQ 73
          + +++EIGC+GCS  HT DACL NIETI ++KND YSNTYN GWR+H NF + G GQ
Sbjct: 1  MNEVEEIGCVGCSSLHTIDACLLNIETITYVKNDPYSNTYNAGWRDHLNFSWGGQGQ 57

BLAST of PI0015098 vs. NCBI nr
Match: KAA0038192.1 (hypothetical protein E6C27_scaffold270G00250 [Cucumis melo var. makuwa] >TYK14793.1 hypothetical protein E5676_scaffold1610G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 1.4e-12
Identity = 37/65 (56.92%), Postives = 44/65 (67.69%), Query Frame = 0

Query: 1   MALMQVNATDGSIHAVKQLKEIGCMGCSRPHTTDACLQNIETIAFIKNDSYSNTYNLGWR 60
           M  +QVNA   S  +VKQ+ EIGCM    PH  DAC  NIE +A++K+D YSNTYN  WR
Sbjct: 85  MVFLQVNAASSSFQSVKQVDEIGCMRFGSPHKIDACPLNIEIVAYVKHDPYSNTYNPRWR 144

Query: 61  NHCNF 66
           NH NF
Sbjct: 145 NHPNF 149

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VE685.0e-1655.22Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UTC17.2e-1552.63Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UG804.7e-1463.16Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BKZ64.7e-1463.16Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CSC76.8e-1356.92Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0066652.11.0e-1555.22uncharacterized protein E6C27_scaffold979G00840 [Cucumis melo var. makuwa] >TYK0... [more]
KAA0058408.11.5e-1452.63uncharacterized protein E6C27_scaffold409G001200 [Cucumis melo var. makuwa] >TYK... [more]
TYJ99639.19.7e-1463.16hypothetical protein E5676_scaffold562G00110 [Cucumis melo var. makuwa][more]
KAA0054822.19.7e-1463.16hypothetical protein E6C27_scaffold437G001150 [Cucumis melo var. makuwa][more]
KAA0038192.11.4e-1256.92hypothetical protein E6C27_scaffold270G00250 [Cucumis melo var. makuwa] >TYK1479... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0015098.1PI0015098.1mRNA