PI0015065 (gene) Melon (PI 482460) v1

Overview


Name	PI0015065
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Exportin-T
Location	chr09: 9262608 .. 9264157 (-)
RNA-Seq Expression	PI0015065
Synteny	PI0015065

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGTGGTCAACGACGACAGAGGTGGTGGCGACGACCTTAAGGGCAGCGACAATCTCCCTTCTGGCTTCAACATATTCAACAAGTGTTCTTGATAAGGTGGACTGATATAAAGTCTTTTTCGAACTTGTTTCTTGTGGGATTGTGTTGATTGAAATTTGAGAATTTGTTCTTCCAAACAACTTCAAAATAAGTTGACGAGGAATAGGAAGAAGAAGAAGAATTAAGATTAATAAGTTGTTTGATTTTGTAATGGATTCATAGTAAAAATCCATCTTTAATGAAATCTTTTTTTTTTTTTTGAAAGATTACAGGTGTATTGTACATTCTTCTTCAATTCAGACATTGGATGTTCTTCTCCAAGTTCTTGTTGCGTTTCCTAAAATAGTGCCTCTACGGACTAAGGTATAGGATTTGATATGGATCCTTAGAGATACTTCCTTTTCTATATTTTATAAATTGCATCAGCACTGATGTTGGTTTCTATTGAATGAAGGTCCTCTCTTTTATACATCGAATGGTGGAAACTTTCCGCACATCTATTTTTCCCTATCTTCCAAAAGGCTTTGGAGCAGTCGCTTGCAGAAAGTGAGGTACTGATGAACTCTAAGTTGGCATTTGATCCATAAGATAAATCTGATAAATGGAACTAAAAGGAACTATCTGACACACCTTTGTTTTGAGTATTATTTATCTTTTGTATGAGTGAAGCTTATTTATTTTTATCTCGCAATTTGTTTTAGAGCTTCAATTTCAATGCATGTTTTCTTGCAGCCGAAGGAGTTGGTTAGTTTCCCTGTGTTACTTAATCAACTAATCTGCAAGTTCAGCACTTCGGTCCATGGGATTTTGGAGGATGTATTTCCAACAAGTGCTAGTCAGATTTTCAACATTATACCAAGAGATTCTCTTCCTTCAGGACCGAAAGCAATATTGAGGTACGCTTATCGTGTTCTTTAATTATGAATTTATTTATGTTCGTTATATTATTAAATGTCGTCTTCAAGATGACCCTAGCATTTGCATCAGTGCACATTTCAAATGTGATTTCAAATGTGGTAAGTTGTTTGGTTTATGCTCATTGTTTTGTAGTAATGTAATATAAAATAAACTCTATTGTTTTTTTATTAAACAAAACCTTTAAACTACAAATGAGGGTAAGCCTTTAAATTACAAATGGGGTACTAGCTTATAGGAACCATTCATTACATTGTTTGAAATGGAACCCAACTTGTATTACTTTGGGACATTTCCACGTTATATATTTTAAGGTTTCCATGTTGAAATCAATATTTAACCGGGTATGATATGGCTTGCATTCTTTCTAGTTTACCCAGTAGTTGTTAATATCGAATTTATATTGTAGCAAATGGAATTTTTGAGCATATGTTAAATATGACGTGTTGAACTGCTTCAAGCTTGAAACATAATTCTTCAAAGGCTTGACCTTCAATTTAATAAGTAGAAATTTTGCCATCCTTTATCTTACACTCGTCCCATGTGTTTTTATTGTAGGAAATTTGTGAACTACAAGAGCTTCAACGAATAG

mRNA sequence

ATGTTGGTGTGCCTCTACGGACTAAGGTCCTCTCTTTTATACATCGAATGGTGGAAACTTTCCGCACATCTATTTTTCCCTATCTTCCAAAAGGCTTTGGAGCAGTCGCTTGCAGAAAGTGAGCCGAAGGAGTTGGTTAGTTTCCCTGTGTTACTTAATCAACTAATCTGCAAGTTCAGCACTTCGGTCCATGGGATTTTGGAGGATGTATTTCCAACAAGTGCTAGTCAGATTTTCAACATTATACCAAGAGATTCTCTTCCTTCAGGACCGAAAGCAATATTGAGGAAATTTGTGAACTACAAGAGCTTCAACGAATAG

Coding sequence (CDS)

ATGTTGGTGTGCCTCTACGGACTAAGGTCCTCTCTTTTATACATCGAATGGTGGAAACTTTCCGCACATCTATTTTTCCCTATCTTCCAAAAGGCTTTGGAGCAGTCGCTTGCAGAAAGTGAGCCGAAGGAGTTGGTTAGTTTCCCTGTGTTACTTAATCAACTAATCTGCAAGTTCAGCACTTCGGTCCATGGGATTTTGGAGGATGTATTTCCAACAAGTGCTAGTCAGATTTTCAACATTATACCAAGAGATTCTCTTCCTTCAGGACCGAAAGCAATATTGAGGAAATTTGTGAACTACAAGAGCTTCAACGAATAG

Protein sequence

MLVCLYGLRSSLLYIEWWKLSAHLFFPIFQKALEQSLAESEPKELVSFPVLLNQLICKFSTSVHGILEDVFPTSASQIFNIIPRDSLPSGPKAILRKFVNYKSFNE

Homology

[Close]

BLAST of PI0015065 vs. ExPASy Swiss-Prot
Match: Q7PC79 (Exportin-T OS=Arabidopsis thaliana OX=3702 GN=PSD PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.9e-19
Identity = 45/69 (65.22%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 26  FPIFQKALEQSLAESEPKELVSFPVLLNQLICKFSTSVHGILEDVFPTSASQIFNIIPRD 85
           FP   KALEQ LA+SEPKE+V F VLLNQLICKF++++H ILE+V+P  A +IFN+IPRD
Sbjct: 727 FPYLPKALEQLLADSEPKEMVGFMVLLNQLICKFNSALHDILEEVYPVVAVRIFNVIPRD 786

Query: 86  SLPSGPKAI 95
            LPS P A+
Sbjct: 787 GLPSRPGAV 795

[Close]

BLAST of PI0015065 vs. ExPASy Swiss-Prot
Match: Q8H3A7 (Exportin-T OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0613300 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 8.8e-08
Identity = 27/64 (42.19%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 27  PIFQKALEQSLAESEPKELVSFPVLLNQLICKFSTSVHGILEDVFPTSASQIFNIIPRDS 86
           P    AL Q L ++E K++  F  L+NQ+ICKF +S + +LEDVFP  AS +  I+  D+
Sbjct: 721 PCIPIALRQLLVDNEAKDMSEFLYLINQIICKFKSSANALLEDVFPAIASHLSVILSHDA 780

Query: 87  LPSG 91
             +G
Sbjct: 781 FSNG 784

[Close]

BLAST of PI0015065 vs. ExPASy TrEMBL
Match: A0A1S3CI57 (Exportin-T OS=Cucumis melo OX=3656 GN=LOC103500689 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.9e-22
Identity = 57/66 (86.36%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 26  FPIFQKALEQSLAESEPKELVSFPVLLNQLICKFSTSVHGILEDVFPTSASQIFNIIPRD 85
           FP   KALEQ LAESEPKELV F VLLNQLICKFSTSVHGILEDVFPT AS+IFN+IPRD
Sbjct: 729 FPYLPKALEQLLAESEPKELVGFLVLLNQLICKFSTSVHGILEDVFPTIASRIFNVIPRD 788

Query: 86  SLPSGP 92
           SLPSGP
Sbjct: 789 SLPSGP 794

[Close]

BLAST of PI0015065 vs. ExPASy TrEMBL
Match: A0A5A7UYX4 (Exportin-T OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001280 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.9e-22
Identity = 57/66 (86.36%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 26  FPIFQKALEQSLAESEPKELVSFPVLLNQLICKFSTSVHGILEDVFPTSASQIFNIIPRD 85
           FP   KALEQ LAESEPKELV F VLLNQLICKFSTSVHGILEDVFPT AS+IFN+IPRD
Sbjct: 729 FPYLPKALEQLLAESEPKELVGFLVLLNQLICKFSTSVHGILEDVFPTIASRIFNVIPRD 788

Query: 86  SLPSGP 92
           SLPSGP
Sbjct: 789 SLPSGP 794

[Close]

BLAST of PI0015065 vs. ExPASy TrEMBL
Match: A0A0A0K6Z9 (Exportin-T OS=Cucumis sativus OX=3659 GN=Csa_7G449450 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 6.5e-22
Identity = 57/66 (86.36%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 26  FPIFQKALEQSLAESEPKELVSFPVLLNQLICKFSTSVHGILEDVFPTSASQIFNIIPRD 85
           FP   KALEQ LAESEPKELV F VLLNQLICKFSTSVHGILEDVFPT  S+IFNIIPRD
Sbjct: 729 FPYLPKALEQLLAESEPKELVGFLVLLNQLICKFSTSVHGILEDVFPTIVSRIFNIIPRD 788

Query: 86  SLPSGP 92
           SLPSGP
Sbjct: 789 SLPSGP 794

[Close]

BLAST of PI0015065 vs. ExPASy TrEMBL
Match: A0A6J1D5T7 (Exportin-T OS=Momordica charantia OX=3673 GN=LOC111017550 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.9e-21
Identity = 56/66 (84.85%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 26  FPIFQKALEQSLAESEPKELVSFPVLLNQLICKFSTSVHGILEDVFPTSASQIFNIIPRD 85
           FP   KALEQ LAESEPKE+V F VLLNQLICKFSTSVHGILEDVFPT AS+IFNIIP D
Sbjct: 729 FPYLPKALEQLLAESEPKEMVGFIVLLNQLICKFSTSVHGILEDVFPTIASRIFNIIPTD 788

Query: 86  SLPSGP 92
           SLPSGP
Sbjct: 789 SLPSGP 794

[Close]

BLAST of PI0015065 vs. ExPASy TrEMBL
Match: A0A6J1GNA6 (Exportin-T OS=Cucurbita moschata OX=3662 GN=LOC111456004 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 9.4e-21
Identity = 54/66 (81.82%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 26  FPIFQKALEQSLAESEPKELVSFPVLLNQLICKFSTSVHGILEDVFPTSASQIFNIIPRD 85
           FP   KALEQ L ESEPKE+V F VLLNQLICKFSTSVHGILEDVFPT AS+IF+IIPRD
Sbjct: 729 FPYLPKALEQLLEESEPKEMVGFLVLLNQLICKFSTSVHGILEDVFPTIASRIFSIIPRD 788

Query: 86  SLPSGP 92
           S+PSGP
Sbjct: 789 SIPSGP 794

[Close]

BLAST of PI0015065 vs. NCBI nr
Match: XP_038898562.1 (exportin-T [Benincasa hispida] >XP_038898563.1 exportin-T [Benincasa hispida])

HSP 1 Score: 114.8 bits (286), Expect = 4.6e-22
Identity = 58/66 (87.88%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 26  FPIFQKALEQSLAESEPKELVSFPVLLNQLICKFSTSVHGILEDVFPTSASQIFNIIPRD 85
           FP   KALEQ LAESEPKELV F VLLNQLICKFSTSVHGILEDVFPT AS+IFNIIPRD
Sbjct: 729 FPYLPKALEQLLAESEPKELVGFLVLLNQLICKFSTSVHGILEDVFPTIASRIFNIIPRD 788

Query: 86  SLPSGP 92
           SLPSGP
Sbjct: 789 SLPSGP 794

[Close]

BLAST of PI0015065 vs. NCBI nr
Match: XP_008462297.1 (PREDICTED: exportin-T [Cucumis melo] >XP_008462298.1 PREDICTED: exportin-T [Cucumis melo] >XP_008462299.1 PREDICTED: exportin-T [Cucumis melo] >KAA0059396.1 exportin-T [Cucumis melo var. makuwa] >TYK03931.1 exportin-T [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 6.1e-22
Identity = 57/66 (86.36%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 26  FPIFQKALEQSLAESEPKELVSFPVLLNQLICKFSTSVHGILEDVFPTSASQIFNIIPRD 85
           FP   KALEQ LAESEPKELV F VLLNQLICKFSTSVHGILEDVFPT AS+IFN+IPRD
Sbjct: 729 FPYLPKALEQLLAESEPKELVGFLVLLNQLICKFSTSVHGILEDVFPTIASRIFNVIPRD 788

Query: 86  SLPSGP 92
           SLPSGP
Sbjct: 789 SLPSGP 794

[Close]

BLAST of PI0015065 vs. NCBI nr
Match: XP_004141704.1 (exportin-T [Cucumis sativus] >KGN45485.1 hypothetical protein Csa_016588 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 1.3e-21
Identity = 57/66 (86.36%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 26  FPIFQKALEQSLAESEPKELVSFPVLLNQLICKFSTSVHGILEDVFPTSASQIFNIIPRD 85
           FP   KALEQ LAESEPKELV F VLLNQLICKFSTSVHGILEDVFPT  S+IFNIIPRD
Sbjct: 729 FPYLPKALEQLLAESEPKELVGFLVLLNQLICKFSTSVHGILEDVFPTIVSRIFNIIPRD 788

Query: 86  SLPSGP 92
           SLPSGP
Sbjct: 789 SLPSGP 794

[Close]

BLAST of PI0015065 vs. NCBI nr
Match: XP_022149034.1 (exportin-T [Momordica charantia])

HSP 1 Score: 111.7 bits (278), Expect = 3.9e-21
Identity = 56/66 (84.85%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 26  FPIFQKALEQSLAESEPKELVSFPVLLNQLICKFSTSVHGILEDVFPTSASQIFNIIPRD 85
           FP   KALEQ LAESEPKE+V F VLLNQLICKFSTSVHGILEDVFPT AS+IFNIIP D
Sbjct: 729 FPYLPKALEQLLAESEPKEMVGFIVLLNQLICKFSTSVHGILEDVFPTIASRIFNIIPTD 788

Query: 86  SLPSGP 92
           SLPSGP
Sbjct: 789 SLPSGP 794

[Close]

BLAST of PI0015065 vs. NCBI nr
Match: XP_022953461.1 (exportin-T-like [Cucurbita moschata] >XP_022953462.1 exportin-T-like [Cucurbita moschata])

HSP 1 Score: 109.4 bits (272), Expect = 1.9e-20
Identity = 54/66 (81.82%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 26  FPIFQKALEQSLAESEPKELVSFPVLLNQLICKFSTSVHGILEDVFPTSASQIFNIIPRD 85
           FP   KALEQ L ESEPKE+V F VLLNQLICKFSTSVHGILEDVFPT AS+IF+IIPRD
Sbjct: 729 FPYLPKALEQLLEESEPKEMVGFLVLLNQLICKFSTSVHGILEDVFPTIASRIFSIIPRD 788

Query: 86  SLPSGP 92
           S+PSGP
Sbjct: 789 SIPSGP 794

[Close]

BLAST of PI0015065 vs. TAIR 10
Match: AT1G72560.1 (ARM repeat superfamily protein )

HSP 1 Score: 95.9 bits (237), Expect = 2.1e-20
Identity = 45/69 (65.22%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 26  FPIFQKALEQSLAESEPKELVSFPVLLNQLICKFSTSVHGILEDVFPTSASQIFNIIPRD 85
           FP   KALEQ LA+SEPKE+V F VLLNQLICKF++++H ILE+V+P  A +IFN+IPRD
Sbjct: 727 FPYLPKALEQLLADSEPKEMVGFMVLLNQLICKFNSALHDILEEVYPVVAVRIFNVIPRD 786

Query: 86  SLPSGPKAI 95
            LPS P A+
Sbjct: 787 GLPSRPGAV 795

[Close]

BLAST of PI0015065 vs. TAIR 10
Match: AT1G72560.2 (ARM repeat superfamily protein )

HSP 1 Score: 95.9 bits (237), Expect = 2.1e-20
Identity = 45/69 (65.22%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 26  FPIFQKALEQSLAESEPKELVSFPVLLNQLICKFSTSVHGILEDVFPTSASQIFNIIPRD 85
           FP   KALEQ LA+SEPKE+V F VLLNQLICKF++++H ILE+V+P  A +IFN+IPRD
Sbjct: 727 FPYLPKALEQLLADSEPKEMVGFMVLLNQLICKFNSALHDILEEVYPVVAVRIFNVIPRD 786

Query: 86  SLPSGPKAI 95
            LPS P A+
Sbjct: 787 GLPSRPGAV 795

[Close]

BLAST of PI0015065 vs. TAIR 10
Match: AT1G72560.3 (ARM repeat superfamily protein )

HSP 1 Score: 95.9 bits (237), Expect = 2.1e-20
Identity = 45/69 (65.22%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 26  FPIFQKALEQSLAESEPKELVSFPVLLNQLICKFSTSVHGILEDVFPTSASQIFNIIPRD 85
           FP   KALEQ LA+SEPKE+V F VLLNQLICKF++++H ILE+V+P  A +IFN+IPRD
Sbjct: 727 FPYLPKALEQLLADSEPKEMVGFMVLLNQLICKFNSALHDILEEVYPVVAVRIFNVIPRD 786

Query: 86  SLPSGPKAI 95
            LPS P A+
Sbjct: 787 GLPSRPGAV 795

The following BLAST results are available for this feature:

BLAST of PI0015065 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7PC79	2.9e-19	65.22	Exportin-T OS=Arabidopsis thaliana OX=3702 GN=PSD PE=2 SV=1	[more]
Q8H3A7	8.8e-08	42.19	Exportin-T OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0613300 PE=2 SV=1	[more]

BLAST of PI0015065 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CI57	2.9e-22	86.36	Exportin-T OS=Cucumis melo OX=3656 GN=LOC103500689 PE=3 SV=1	[more]
A0A5A7UYX4	2.9e-22	86.36	Exportin-T OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001280 PE...	[more]
A0A0A0K6Z9	6.5e-22	86.36	Exportin-T OS=Cucumis sativus OX=3659 GN=Csa_7G449450 PE=3 SV=1	[more]
A0A6J1D5T7	1.9e-21	84.85	Exportin-T OS=Momordica charantia OX=3673 GN=LOC111017550 PE=3 SV=1	[more]
A0A6J1GNA6	9.4e-21	81.82	Exportin-T OS=Cucurbita moschata OX=3662 GN=LOC111456004 PE=3 SV=1	[more]

BLAST of PI0015065 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898562.1	4.6e-22	87.88	exportin-T [Benincasa hispida] >XP_038898563.1 exportin-T [Benincasa hispida]	[more]
XP_008462297.1	6.1e-22	86.36	PREDICTED: exportin-T [Cucumis melo] >XP_008462298.1 PREDICTED: exportin-T [Cucu...	[more]
XP_004141704.1	1.3e-21	86.36	exportin-T [Cucumis sativus] >KGN45485.1 hypothetical protein Csa_016588 [Cucumi...	[more]
XP_022149034.1	3.9e-21	84.85	exportin-T [Momordica charantia]	[more]
XP_022953461.1	1.9e-20	81.82	exportin-T-like [Cucurbita moschata] >XP_022953462.1 exportin-T-like [Cucurbita ...	[more]

BLAST of PI0015065 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G72560.1	2.1e-20	65.22	ARM repeat superfamily protein	[more]
AT1G72560.2	2.1e-20	65.22	ARM repeat superfamily protein	[more]
AT1G72560.3	2.1e-20	65.22	ARM repeat superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 20..102 e-value: 1.1E-8 score: 35.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0015065.1	PI0015065.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071528	tRNA re-export from nucleus
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016363	nuclear matrix
cellular_component	GO:0005643	nuclear pore
molecular_function	GO:0031267	small GTPase binding
molecular_function	GO:0000049	tRNA binding