Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGATGATGTTGGAAAAATGTTTTTAGGTCATGGATGTCTTGGAGAGCGAAAGGTAAACCTTGCCACATTTCTATTTCAAAAAGAGGCAGAGAATTTGGTGGAGGTCAATCGAGGTAAGACGAAGTGATGCAAACATTCTTGATTGGAAAACTTTCAAAGTATTTTTTAGGATACGTACTATCCTAGTACCTATTGTAAGTTAAAAAGAGATGAATTTCTAAGTTTGGAACAAAGATCGCTTTCGATGACGAAATATAAAAGGAAGATAACTAAAATTTCTAGGTATGCTGAAGTGTTAGTGGCAATAGAGGTTGACTGTTGTCGTAAGTTCGAAAGACGTTTAAGGTAAGAAATTCTTACCCCTGTTACTGCAACAGCAAAGTGGAATGACTTCTCCCAGTTGGTTGAGACTGCATTACGGGTTGAACAAGGTCTCTTGAAGACTAAACCAACAATGGAATCAGGTCAAGGGACTTCATTGTTTAGTAATACTAAAGGATGGGAGCAACAACAATTTACACCTGGTGTGTCGAGTAAACAAGATTTTAAAACTCAATCTGGTGAACAGTTTTTCAGACAACGAAGGAAGTGTTTTTCTAAGACCATCAGTTAAAGAAGTAACGATGTCTCGATCAGGACAGGAATCTACAACAAGTAATCAAGATAGATCTCCGTGTGGATATTGTGGAAGATTCCATAGAGGATCATGTTTGGTAAAAGTAGGAGAATGTCACTACTGTAAGAAACTAGGACATTTCATGAGGGAATGTCCGTTGTTGAAAAGAGAATTGCAGGAAAACCAGAAAGAAGAGTCTCAGTTAATGAATCAACAGAAGACTACACCAGTTGGAAAAGAAGAACCCAGTGACACCAAGCAAAAAGGTGTAGGACGACCTCGATAG
mRNA sequence
ATGGTTGATGATGTTGGAAAAATGTTTTTAGGTCATGGATGTCTTGGAGAGCGAAAGGTAAACCTTGCCACATTTCTATTTCAAAAAGAGGCAGAGAATTTGGTGGAGGTCAATCGAGCAAAGTGGAATGACTTCTCCCAGTTGGTTGAGACTGCATTACGGGTTGAACAAGGTCTCTTGAAGACTAAACCAACAATGGAATCAGTAATACTAAAGGATGGGAGCAACAACAATTTACACCTGGTGTGTCGAGTAAACAAGATTTTAAAACTCAATCTGGTGAACAGTTTTTCAGACAACGAAGGAAGTGTTTTTCTAAGACCATCAGTTAAAGAAGTAACGATGTCTCGATCAGGACAGGAATCTACAACAAGTAATCAAGATAGATCTCCGTGTGGATATTGTGGAAGATTCCATAGAGGATCATGTTTGGTAAAAGTAGGAGAATGTCACTACTGTAAGAAACTAGGACATTTCATGAGGGAATGTCCGTTGTTGAAAAGAGAATTGCAGGAAAACCAGAAAGAAGAGTCTCAGTTAATGAATCAACAGAAGACTACACCAGTTGGAAAAGAAGAACCCAGTGACACCAAGCAAAAAGGTGTAGGACGACCTCGATAG
Coding sequence (CDS)
ATGGTTGATGATGTTGGAAAAATGTTTTTAGGTCATGGATGTCTTGGAGAGCGAAAGGTAAACCTTGCCACATTTCTATTTCAAAAAGAGGCAGAGAATTTGGTGGAGGTCAATCGAGCAAAGTGGAATGACTTCTCCCAGTTGGTTGAGACTGCATTACGGGTTGAACAAGGTCTCTTGAAGACTAAACCAACAATGGAATCAGTAATACTAAAGGATGGGAGCAACAACAATTTACACCTGGTGTGTCGAGTAAACAAGATTTTAAAACTCAATCTGGTGAACAGTTTTTCAGACAACGAAGGAAGTGTTTTTCTAAGACCATCAGTTAAAGAAGTAACGATGTCTCGATCAGGACAGGAATCTACAACAAGTAATCAAGATAGATCTCCGTGTGGATATTGTGGAAGATTCCATAGAGGATCATGTTTGGTAAAAGTAGGAGAATGTCACTACTGTAAGAAACTAGGACATTTCATGAGGGAATGTCCGTTGTTGAAAAGAGAATTGCAGGAAAACCAGAAAGAAGAGTCTCAGTTAATGAATCAACAGAAGACTACACCAGTTGGAAAAGAAGAACCCAGTGACACCAAGCAAAAAGGTGTAGGACGACCTCGATAG
Protein sequence
MVDDVGKMFLGHGCLGERKVNLATFLFQKEAENLVEVNRAKWNDFSQLVETALRVEQGLLKTKPTMESVILKDGSNNNLHLVCRVNKILKLNLVNSFSDNEGSVFLRPSVKEVTMSRSGQESTTSNQDRSPCGYCGRFHRGSCLVKVGECHYCKKLGHFMRECPLLKRELQENQKEESQLMNQQKTTPVGKEEPSDTKQKGVGRPR
Homology
BLAST of PI0014916 vs. ExPASy TrEMBL
Match:
A0A5A7UZA9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G002660 PE=4 SV=1)
HSP 1 Score: 102.4 bits (254), Expect = 2.2e-18
Identity = 71/175 (40.57%), Postives = 93/175 (53.14%), Query Frame = 0
Query: 40 AKWNDFSQLVETALRVEQGLLKTKPTMESVILKDGSNNNLHLVCRVNKILKLNLVNSFSD 99
AKW +FSQLVETALRVEQ + + K +E L G++ R S +
Sbjct: 174 AKWTNFSQLVETALRVEQSITEEKSAVE---LSRGTSTASGFRGR---------QASRNV 233
Query: 100 NEGSVFLRPS-------VKEVTMSRSGQESTTSNQDRSPCGYCGRFHRGSCLVKVGECHY 159
+ GSVF R S ++ S+ GQES S R+PC CGR HRG CLV G C+
Sbjct: 234 SYGSVFQRQSQRIPSQPIRSTVRSQPGQESIASTVRRTPCTSCGRNHRGQCLVGAGVCYQ 293
Query: 160 CKKLGHFMRECPLLKRELQENQKEESQLMNQQKTTPVGKEEPSDTKQKG-VGRPR 207
C + GHF ++CP L +Q +Q SQ + Q + + V E S +QKG VGRPR
Sbjct: 294 CGQPGHFKKDCPQLNMTVQRDQGVGSQTVEQSRVSVVPIEGTSGARQKGVVGRPR 336
BLAST of PI0014916 vs. ExPASy TrEMBL
Match:
A0A5A7V2E0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold108G002150 PE=4 SV=1)
HSP 1 Score: 102.4 bits (254), Expect = 2.2e-18
Identity = 74/189 (39.15%), Postives = 98/189 (51.85%), Query Frame = 0
Query: 40 AKWNDFSQLVETALRVEQGLLKTKPTMESVILKDGSNNNLHL-VCRVNKILKLNLVNSFS 99
AKW +FSQLVETALRVEQ + + K +V L G++ L C + ++S
Sbjct: 216 AKWTNFSQLVETALRVEQSITEEK---SAVKLSRGTSTASGLRGCEQRRFTPGINISSRQ 275
Query: 100 D-------------NEGSVFLRPS-------VKEVTMSRSGQESTTSNQDRSPCGYCGRF 159
D + GSVF R S ++ S+ GQES S R PC CGR
Sbjct: 276 DFKNRSGGQASRNVSYGSVFQRHSQRIPSQPIRSTVRSQPGQESIASTVRRLPCTSCGRN 335
Query: 160 HRGSCLVKVGECHYCKKLGHFMRECPLLKRELQENQKEESQLMNQQKTTPVGKEEPSDTK 207
HRG CLV VG C+ C + GHF ++CP L +Q +Q SQ + Q + + V E+ S +
Sbjct: 336 HRGQCLVGVGVCYQCGQPGHFKKDCPQLNMTVQRDQGVGSQTVEQSRVSVVPTEDTSGAR 395
BLAST of PI0014916 vs. ExPASy TrEMBL
Match:
A0A5A7VQD2 (Putative Gag-pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00150 PE=4 SV=1)
HSP 1 Score: 100.9 bits (250), Expect = 6.5e-18
Identity = 71/186 (38.17%), Postives = 94/186 (50.54%), Query Frame = 0
Query: 40 AKWNDFSQLVETALRVEQGLLKTKPTME-----SVILKDGSNNNLHLVCRVNKILKLNLV 99
AKW +FSQLVETA+RVEQ + + K +E S +N + +
Sbjct: 216 AKWTNFSQLVETAIRVEQSITEEKSAVELSRGTSTASGFRGREQRRFTPGINISSRQDFK 275
Query: 100 N------SFSDNEGSVFLRPS-------VKEVTMSRSGQESTTSNQDRSPCGYCGRFHRG 159
N S + + GSVF R S ++ S+ GQES S R PC CGR HRG
Sbjct: 276 NRSGGQASRNVSYGSVFQRQSQRIPSQPIRSTVRSQPGQESIASTVRRIPCTSCGRNHRG 335
Query: 160 SCLVKVGECHYCKKLGHFMRECPLLKRELQENQKEESQLMNQQKTTPVGKEEPSDTKQKG 207
CLV G C+ C + GHF ++CP LK +Q +Q SQ + Q + + V E S +QKG
Sbjct: 336 QCLVGAGVCYQCGQPGHFKKDCPQLKMTVQRDQGVGSQTIEQSRVSVVPTEGTSGARQKG 395
BLAST of PI0014916 vs. ExPASy TrEMBL
Match:
A0A5D3BTP3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00020 PE=4 SV=1)
HSP 1 Score: 100.5 bits (249), Expect = 8.5e-18
Identity = 69/189 (36.51%), Postives = 97/189 (51.32%), Query Frame = 0
Query: 40 AKWNDFSQLVETALRVEQGLLKTKPTMESVILKDGSNNNLHLVCRVNKILKLNL-VNSFS 99
AKW +FSQLVETALRV+Q +++ K ME L G + + R + + V+
Sbjct: 428 AKWMNFSQLVETALRVKQSIVEEKSAME---LSRGVSTTSGIRGREQRRFTPGVNVSGCQ 487
Query: 100 D-------------NEGSVFLRPS-------VKEVTMSRSGQESTTSNQDRSPCGYCGRF 159
D + GS + R S V SR+GQES S R+PC CG+
Sbjct: 488 DFKRRSGGKPLRQMSSGSAYQRQSRRASSQPANSVARSRTGQESVASESKRTPCVSCGKS 547
Query: 160 HRGSCLVKVGECHYCKKLGHFMRECPLLKRELQENQKEESQLMNQQKTTPVGKEEPSDTK 207
H+G C++ G C+ C K GHF R+CP L+ ++ +Q ES + Q + + EE S +
Sbjct: 548 HQGRCVIGAGVCYQCGKTGHFKRDCPQLRVVVRRDQGVESHTVEQSRISTAAGEETSGAR 607
BLAST of PI0014916 vs. ExPASy TrEMBL
Match:
A0A5D3C7J1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold594G00290 PE=4 SV=1)
HSP 1 Score: 100.5 bits (249), Expect = 8.5e-18
Identity = 70/189 (37.04%), Postives = 99/189 (52.38%), Query Frame = 0
Query: 40 AKWNDFSQLVETALRVEQGLLKTKPTMESVILKDGSNNNLHLVCRVNKILKLNL-VNSFS 99
AKW +FSQLVETALRVEQ + + K +E L G++ R + L + ++S
Sbjct: 437 AKWTNFSQLVETALRVEQSITEEKSAVE---LSRGTSTASGFRGREQRRFTLGINISSRQ 496
Query: 100 D-------------NEGSVFLRPS-------VKEVTMSRSGQESTTSNQDRSPCGYCGRF 159
D + GSVF R S ++ S+ GQ+S S+ ++PC CGR
Sbjct: 497 DFKNRSGGQASRNVSYGSVFQRQSQRIPSQPIRSTVRSQPGQKSIASSVKQTPCSSCGRN 556
Query: 160 HRGSCLVKVGECHYCKKLGHFMRECPLLKRELQENQKEESQLMNQQKTTPVGKEEPSDTK 207
HRG CLV G C+ C + GHF ++CP L +Q +Q SQ + Q + + V E S +
Sbjct: 557 HRGQCLVGAGVCYQCGQPGHFKKDCPQLNMTVQRDQGVGSQTVEQSRVSVVPTEGTSGAR 616
BLAST of PI0014916 vs. NCBI nr
Match:
KAA0060440.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 102.4 bits (254), Expect = 4.6e-18
Identity = 71/175 (40.57%), Postives = 93/175 (53.14%), Query Frame = 0
Query: 40 AKWNDFSQLVETALRVEQGLLKTKPTMESVILKDGSNNNLHLVCRVNKILKLNLVNSFSD 99
AKW +FSQLVETALRVEQ + + K +E L G++ R S +
Sbjct: 174 AKWTNFSQLVETALRVEQSITEEKSAVE---LSRGTSTASGFRGR---------QASRNV 233
Query: 100 NEGSVFLRPS-------VKEVTMSRSGQESTTSNQDRSPCGYCGRFHRGSCLVKVGECHY 159
+ GSVF R S ++ S+ GQES S R+PC CGR HRG CLV G C+
Sbjct: 234 SYGSVFQRQSQRIPSQPIRSTVRSQPGQESIASTVRRTPCTSCGRNHRGQCLVGAGVCYQ 293
Query: 160 CKKLGHFMRECPLLKRELQENQKEESQLMNQQKTTPVGKEEPSDTKQKG-VGRPR 207
C + GHF ++CP L +Q +Q SQ + Q + + V E S +QKG VGRPR
Sbjct: 294 CGQPGHFKKDCPQLNMTVQRDQGVGSQTVEQSRVSVVPIEGTSGARQKGVVGRPR 336
BLAST of PI0014916 vs. NCBI nr
Match:
KAA0059911.1 (reverse transcriptase [Cucumis melo var. makuwa])
HSP 1 Score: 102.4 bits (254), Expect = 4.6e-18
Identity = 74/189 (39.15%), Postives = 98/189 (51.85%), Query Frame = 0
Query: 40 AKWNDFSQLVETALRVEQGLLKTKPTMESVILKDGSNNNLHL-VCRVNKILKLNLVNSFS 99
AKW +FSQLVETALRVEQ + + K +V L G++ L C + ++S
Sbjct: 216 AKWTNFSQLVETALRVEQSITEEK---SAVKLSRGTSTASGLRGCEQRRFTPGINISSRQ 275
Query: 100 D-------------NEGSVFLRPS-------VKEVTMSRSGQESTTSNQDRSPCGYCGRF 159
D + GSVF R S ++ S+ GQES S R PC CGR
Sbjct: 276 DFKNRSGGQASRNVSYGSVFQRHSQRIPSQPIRSTVRSQPGQESIASTVRRLPCTSCGRN 335
Query: 160 HRGSCLVKVGECHYCKKLGHFMRECPLLKRELQENQKEESQLMNQQKTTPVGKEEPSDTK 207
HRG CLV VG C+ C + GHF ++CP L +Q +Q SQ + Q + + V E+ S +
Sbjct: 336 HRGQCLVGVGVCYQCGQPGHFKKDCPQLNMTVQRDQGVGSQTVEQSRVSVVPTEDTSGAR 395
BLAST of PI0014916 vs. NCBI nr
Match:
KAA0045363.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])
HSP 1 Score: 102.1 bits (253), Expect = 6.0e-18
Identity = 72/186 (38.71%), Postives = 94/186 (50.54%), Query Frame = 0
Query: 40 AKWNDFSQLVETALRVEQGLLKTKPTME-----SVILKDGSNNNLHLVCRVNKILKLNLV 99
AKW +FSQLVETALRVEQ + K K T+E S +N + +
Sbjct: 216 AKWTNFSQLVETALRVEQSITKEKSTVELSRGTSTASGFRGREQRRFTPGINISSRQDFK 275
Query: 100 N------SFSDNEGSVFLRPS-------VKEVTMSRSGQESTTSNQDRSPCGYCGRFHRG 159
N S + + GSVF R S ++ S+ GQES S R PC CGR H G
Sbjct: 276 NRSGGQASRNVSYGSVFQRQSQRIPSQPIRSTVRSQPGQESIASTVRRIPCTSCGRNHWG 335
Query: 160 SCLVKVGECHYCKKLGHFMRECPLLKRELQENQKEESQLMNQQKTTPVGKEEPSDTKQKG 207
CLV G C+ C++ GHF ++CP L +Q +Q SQ + Q + + V E S +QKG
Sbjct: 336 QCLVGAGACYQCRQPGHFKKDCPQLNMTVQRDQGVGSQTVEQSRVSVVPTEGTSGARQKG 395
BLAST of PI0014916 vs. NCBI nr
Match:
KAA0067811.1 (putative Gag-pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 100.9 bits (250), Expect = 1.3e-17
Identity = 71/186 (38.17%), Postives = 94/186 (50.54%), Query Frame = 0
Query: 40 AKWNDFSQLVETALRVEQGLLKTKPTME-----SVILKDGSNNNLHLVCRVNKILKLNLV 99
AKW +FSQLVETA+RVEQ + + K +E S +N + +
Sbjct: 216 AKWTNFSQLVETAIRVEQSITEEKSAVELSRGTSTASGFRGREQRRFTPGINISSRQDFK 275
Query: 100 N------SFSDNEGSVFLRPS-------VKEVTMSRSGQESTTSNQDRSPCGYCGRFHRG 159
N S + + GSVF R S ++ S+ GQES S R PC CGR HRG
Sbjct: 276 NRSGGQASRNVSYGSVFQRQSQRIPSQPIRSTVRSQPGQESIASTVRRIPCTSCGRNHRG 335
Query: 160 SCLVKVGECHYCKKLGHFMRECPLLKRELQENQKEESQLMNQQKTTPVGKEEPSDTKQKG 207
CLV G C+ C + GHF ++CP LK +Q +Q SQ + Q + + V E S +QKG
Sbjct: 336 QCLVGAGVCYQCGQPGHFKKDCPQLKMTVQRDQGVGSQTIEQSRVSVVPTEGTSGARQKG 395
BLAST of PI0014916 vs. NCBI nr
Match:
KAA0041696.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])
HSP 1 Score: 100.5 bits (249), Expect = 1.8e-17
Identity = 70/189 (37.04%), Postives = 99/189 (52.38%), Query Frame = 0
Query: 40 AKWNDFSQLVETALRVEQGLLKTKPTMESVILKDGSNNNLHLVCRVNKILKLNL-VNSFS 99
AKW +FSQLVETALRVEQ + + K +E L G++ R + L + ++S
Sbjct: 437 AKWTNFSQLVETALRVEQSITEEKSAVE---LSRGTSTASGFRGREERRFTLGINISSRQ 496
Query: 100 D-------------NEGSVFLRPS-------VKEVTMSRSGQESTTSNQDRSPCGYCGRF 159
D + GSVF R S ++ S+ GQ+S S+ ++PC CGR
Sbjct: 497 DFKNRSGGQASRNVSYGSVFQRQSQRIPSQPIRSTVRSQPGQKSIASSVKQTPCSSCGRN 556
Query: 160 HRGSCLVKVGECHYCKKLGHFMRECPLLKRELQENQKEESQLMNQQKTTPVGKEEPSDTK 207
HRG CLV G C+ C + GHF ++CP L +Q +Q SQ + Q + + V E S +
Sbjct: 557 HRGQCLVGAGVCYQCGQPGHFKKDCPQLNMTVQRDQGVGSQTVEQSRVSVVPTEGTSGAR 616
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7UZA9 | 2.2e-18 | 40.57 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7V2E0 | 2.2e-18 | 39.15 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold10... | [more] |
A0A5A7VQD2 | 6.5e-18 | 38.17 | Putative Gag-pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... | [more] |
A0A5D3BTP3 | 8.5e-18 | 36.51 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37... | [more] |
A0A5D3C7J1 | 8.5e-18 | 37.04 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold59... | [more] |
Match Name | E-value | Identity | Description | |
KAA0060440.1 | 4.6e-18 | 40.57 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0059911.1 | 4.6e-18 | 39.15 | reverse transcriptase [Cucumis melo var. makuwa] | [more] |
KAA0045363.1 | 6.0e-18 | 38.71 | DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] | [more] |
KAA0067811.1 | 1.3e-17 | 38.17 | putative Gag-pol protein [Cucumis melo var. makuwa] | [more] |
KAA0041696.1 | 1.8e-17 | 37.04 | DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |