PI0014914 (gene) Melon (PI 482460) v1

Overview


Name	PI0014914
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like
Location	chr01: 1118587 .. 1122209 (+)
RNA-Seq Expression	PI0014914
Synteny	PI0014914

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCTTCATCCTCCCGAACAACAAACAGAATCACCTGAGCCCGTAAAACTACTCTTTCTTCTTCAGCAGCTGACTATGTCCTTACCTGCCGTTCTTTCACCGCCGTCCCTCTTCTCCATTCCTCAATCTCAACCACCATTTCCAACTTCTCGAACCTCGCTTCTTTCCCATCCCTTCCAAATTTCTCATACTCTCCTCCGGGCTTCCAGAAGAACCTCCAATTTCTCTCAGGTTCATCTGATTTCTCTTCCCATCTATTCACCTTTTTCCCTGTGTTTTTGTTCTTAGTTTGCTCGATTAACTTCCAGGGAGTTGATAATTTGGTGGACGATCGGCGTAATTGGAACCGTTCAATTAGCTCCGACTTCGACTTAATCGGTGGAGAGGAGGAGGAGGAGGAGGAGGAGGAGGATGAAGATGAGGAAGAGGATAGAAGTTTGGATCTGTTGGTTCGGTTTGTTGAGAATGTTTTTAGGAAAGTCTCGAGGCGAGCTCGGAAGGCTGTGAGATCGGTTCTTCCTCAATCCATCCCTACTAAACTGGTAGAAGTTTATTCAGCTATGAGCTTAATCGTTGATTTTTTTTTCCTGGTTTGTTGTTGGTTCATTGTGTATCAGTACTTGTTTTTCCAGGTGGGATTTTCTGTTAATGGGGTGCTAATGCTGGCGTTTTTGTGGGTTTTGAAAGCATTTCTTGAGGTAAATGCTTCGAAGTTTAGCCATTTTTAATGCTTTTCCTTTGGTATTTCCATATGGATCTGTTTCCTCAGCAATATAGGTAGTTGTAAGCTTTTCATTGCAGAGGAGAAATGTGTGTTCGAAATTTAACCATAATATTGGAGATGGAATTTTTATGACGCTTTGCTTGTTAAATTGCTTGTGCATGGCAAACGTATCAACCGAAAAAAAAAAACAAGAAAAAACGTGAAAAGAAGAAAAAAAAGAAGAGATGTCTTGTGCTTCTAATTGTTGTAAGAAGCTACTTAATGGCCTCCTCTGTAGTCGTACTTTCTGAAAGTCAGCAAATTCAATTGGTTTAATGTTTAGAGCGTTAGAGTTTTTTTTCCATCTTGAAGTTCCCTCCACAAGATATTTCTAATTGTCGCTTGCTGATAAGAGTCTCTTTGTAACTCCTTTAGTATTGCTGGTGCCATGGGCTAACTCCAACTCCAATATATGTTTTGATATCGAATCCACTTCATAAACAATCTCCAGTTCTTGTGAACAAGTGAACCAATATTGTCATCAGAAAACTTTTTGAAACTGGCGAGTATCTGTAAATTAACGAAATATTCAGATTGATCGGCGTCATTTACAGGGTTCTAGTAAGAATCTTGATATGGATAAAAGTGAACTCAGGGACTGTTTGGTTCACTAAATGAAGTTAATAAGTCTGAAGTTACTATGCTTGAGTTAGCAATATTATGTCTCGGGTGTAGAAGATGAAGTTCCTTGATAAATGCAAAAAGCAGGAAAAGAGGGAAAGTTAGAGTTACTTGCAGTGTTTTGAAAGGCGCACTTGGGCACACGCCTAGGCACTAGGCGCAACATTGGCCCCTCACCTATCCCAAGGCAAGGCGCATTGAGGATTAGCGCGCCTCTTTGAGCTTTTTTTTTTTGACAAATCCCTTAAAACACAAATTTGGCTGCCGTTTAATATAAAATATAATAATATTTTTATTTTTTTAACCTAATTGAAGCATCATTATACAATTTATACCTACGACTAAGCTTGATTTAAAGTACAAGCTGAAGCGGCAGATTTCTTATATATCTTGGTGTTGAATGACTAATATTTAACTCTTATATATCCTTTTTTTGGTACAAGTCTGATTTCTATCCATCTATGTTTTGGTTGTGTAAATGAACATGTATGTAGTGTATATATATATTTTTTATTTCTTATATATAGTGCGCCTCACAAAAAAAAGTCCGCGCCCTTTTTTACACCTTGCGCCTAGGCTTCAGAGGGCCATTGTACCTTAGTGCACCTTGGGCATTTTAAAACACTGGTTAGTTGATAAATGTGAAAAGCGCTGGTCCATTGATGTAAATTGATAGAGTTTACTAGTGGTTATAGACAGTTTGTCTGTTGGTGTGAATTGACTATTGAGTTTCCTGGTGTTTATAGACAGTAGGTCCTTCGGGAGACTGTTCTAAAAGGGTCTGGTATGGGAAGAATAAATTTGTTATTGAAACTAATTAAGACTGTAATTTCTTGAGATAGATTTTTATTGAAAAACAAATTTGTTAATGCATTCTTGTTGAAAAAGTTCTCTTTGCCAGTTTTGACTATAATGGTGTCGCTTAAGTAGCTGAGGGTTTGACATAGAGTGGAATTTAAATGTTTTCTTTTCCCTTTTCTATTATTCTCTCCTTTTTTCGTTCATCGAGAGGGGTTGGTCAAATAAGGGATATTGAATGCTTGCTTTCTTTTGGATTTTCTTCCCTCTGGTTTTTTTTTGGGTAATCTCTTATAGGGTGTTTATTTATTTTATTATTTTTAAGTTGTTGACCTTTATTTTTCTACATGACATCACTCTCTTCTCTTCTACTTTCAATTTTCTCAACAATGCCATCCTTGCATTAAAAGGAAAAGAAATAATTCCCTTTTATGAAGATCATACCTAATTTCCAAAGTTTTCTCCTTCTGCATTACTGTATTAGGACTATTTTCATTAACTCCCTTGGCTATATGCAATCTTAGGTGATATGCACACTTGGAACTGCAGTGTTTGTGAGCATACTGATCATTCGTGGAGTGTGGATTGGCATTTTATATCTGCAAGATACCCGCAGCCACAGACTCGAACAACTCGATGATGATCAGCATCATGCCTGGACTGGTGCACAACCTGCATCCTGAATGCTTCAATCACTTAACTACTTACAAGCCACAAGGTCAGTGAACAATCCACTCCCCATCCCCCACCACCACCACCACAAAAAAAAAAAAAAAAAAAGAGAGAGAAGAAAAGGGTATAGCTTACAATAAAATATGGTTTAATCCTATTTTGGTTCTTTAGCCTTCATGCTTATCTCATTTTGATCTTTAAATTCTTGTACTCTTAATTTTGTATATAAAAGTGTTTTAGTTCTCGCCAACACTTTCCATAAATAATCCTATTTTGATTTTTTAATTCATCTGGCAAGTAGATAATTGAATGAACAAGTGTTCGAAAAGCTCCTAATCACTAATATGTTATGCGTTGGTTTCTAAATGAAGTTGGATTTTTGTTAAATGATTTATGAATAAAAGTGGCGAGGACTAAAATAACTATCTATACAAAATTTAGGATCTAAGGTAGTTAAACGTTGTAAAGTTTATTGATCAAAATAAAAGCATGAAGGTATAAGTCTAAGTTTCAAAATAGAATTTAAACCAATACAAAAGCCACTGGAGCAGAAATGCTTGTCTCTAAACTTGAAGTATAGTTTTGATTCTTTTGGCCTCGTAGCTTTCTCTATACTATCAAAGAAAGCAACCCCGCTTTTCTTTTGTTACTTCTTTCAAGTCTTTAGGACATGATTGAAAATAGCAAAGGTAACCTCTATTGTAATATTATGAGACAAATGTGGTATAGTATTTGGTTATAATCTCATTTTTTCTTCCACTCTTTATAA

mRNA sequence

CTCCTTCATCCTCCCGAACAACAAACAGAATCACCTGAGCCCGTAAAACTACTCTTTCTTCTTCAGCAGCTGACTATGTCCTTACCTGCCGTTCTTTCACCGCCGTCCCTCTTCTCCATTCCTCAATCTCAACCACCATTTCCAACTTCTCGAACCTCGCTTCTTTCCCATCCCTTCCAAATTTCTCATACTCTCCTCCGGGCTTCCAGAAGAACCTCCAATTTCTCTCAGGGAGTTGATAATTTGGTGGACGATCGGCGTAATTGGAACCGTTCAATTAGCTCCGACTTCGACTTAATCGGTGGAGAGGAGGAGGAGGAGGAGGAGGAGGAGGATGAAGATGAGGAAGAGGATAGAAGTTTGGATCTGTTGGTTCGGTTTGTTGAGAATGTTTTTAGGAAAGTCTCGAGGCGAGCTCGGAAGGCTGTGAGATCGGTTCTTCCTCAATCCATCCCTACTAAACTGGTGGGATTTTCTGTTAATGGGGTGCTAATGCTGGCGTTTTTGTGGGTTTTGAAAGCATTTCTTGAGGTGATATGCACACTTGGAACTGCAGTGTTTGTGAGCATACTGATCATTCGTGGAGTGTGGATTGGCATTTTATATCTGCAAGATACCCGCAGCCACAGACTCGAACAACTCGATGATGATCAGCATCATGCCTGGACTGGTGCACAACCTGCATCCTGAATGCTTCAATCACTTAACTACTTACAAGCCACAAGGTCAGTGAACAATCCACTCCCCATCCCCCACCACCACCACCACAAAAAAAAAAAAAAAAAAAGAGAGAGAAGAAAAGGGTATAGCTTACAATAAAATATGGTTTAATCCTATTTTGGTTCTTTAGCCTTCATGCTTATCTCATTTTGATCTTTAAATTCTTGTACTCTTAATTTTGTATATAAAAGTGTTTTAGTTCTCGCCAACACTTTCCATAAATAATCCTATTTTGATTTTTTAATTCATCTGGCAAGTAGATAATTGAATGAACAAGTGTTCGAAAAGCTCCTAATCACTAATATGTTATGCGTTGGTTTCTAAATGAAGTTGGATTTTTGTTAAATGATTTATGAATAAAAGTGGCGAGGACTAAAATAACTATCTATACAAAATTTAGGATCTAAGGTAGTTAAACGTTGTAAAGTTTATTGATCAAAATAAAAGCATGAAGGTATAAGTCTAAGTTTCAAAATAGAATTTAAACCAATACAAAAGCCACTGGAGCAGAAATGCTTGTCTCTAAACTTGAAGTATAGTTTTGATTCTTTTGGCCTCGTAGCTTTCTCTATACTATCAAAGAAAGCAACCCCGCTTTTCTTTTGTTACTTCTTTCAAGTCTTTAGGACATGATTGAAAATAGCAAAGGTAACCTCTATTGTAATATTATGAGACAAATGTGGTATAGTATTTGGTTATAATCTCATTTTTTCTTCCACTCTTTATAA

Coding sequence (CDS)

ATGTCCTTACCTGCCGTTCTTTCACCGCCGTCCCTCTTCTCCATTCCTCAATCTCAACCACCATTTCCAACTTCTCGAACCTCGCTTCTTTCCCATCCCTTCCAAATTTCTCATACTCTCCTCCGGGCTTCCAGAAGAACCTCCAATTTCTCTCAGGGAGTTGATAATTTGGTGGACGATCGGCGTAATTGGAACCGTTCAATTAGCTCCGACTTCGACTTAATCGGTGGAGAGGAGGAGGAGGAGGAGGAGGAGGAGGATGAAGATGAGGAAGAGGATAGAAGTTTGGATCTGTTGGTTCGGTTTGTTGAGAATGTTTTTAGGAAAGTCTCGAGGCGAGCTCGGAAGGCTGTGAGATCGGTTCTTCCTCAATCCATCCCTACTAAACTGGTGGGATTTTCTGTTAATGGGGTGCTAATGCTGGCGTTTTTGTGGGTTTTGAAAGCATTTCTTGAGGTGATATGCACACTTGGAACTGCAGTGTTTGTGAGCATACTGATCATTCGTGGAGTGTGGATTGGCATTTTATATCTGCAAGATACCCGCAGCCACAGACTCGAACAACTCGATGATGATCAGCATCATGCCTGGACTGGTGCACAACCTGCATCCTGA

Protein sequence

MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISHTLLRASRRTSNFSQGVDNLVDDRRNWNRSISSDFDLIGGEEEEEEEEEDEDEEEDRSLDLLVRFVENVFRKVSRRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTRSHRLEQLDDDQHHAWTGAQPAS

Homology

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BLAST of PI0014914 vs. ExPASy Swiss-Prot
Match: F4I3V6 (Protein SHORT HYPOCOTYL IN WHITE LIGHT 1 OS=Arabidopsis thaliana OX=3702 GN=SHW1 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-15
Identity = 63/175 (36.00%), Postives = 100/175 (57.14%), Query Frame = 0


Query: 27  TSLLSHPFQISHTLLRASRRTSNFSQGVDNLVDDRRNW---NRSIS-----------SDF 86
           T+L S     S TL+ AS R  + +    N +  RR +   NRS++           SD 
Sbjct: 6   TTLSSSSSSPSLTLINASHRFVSVTPFSSNSIFLRRRFRRLNRSLASSSSHSRRRYESDD 65

Query: 87  DLIGG--------EEEEEEEEEDEDEEEDRSLDLLVRFVENVFRKVSRRARKAVRSVLPQ 146
              GG        +++   +++DE++E + S+DLL+RF+ ++F+KVS+R +KA R +LP 
Sbjct: 66  RFFGGGDNYDVVPDDDGFSDDDDEEDERESSVDLLIRFLRSMFKKVSKRTKKASRRILPA 125

Query: 147 SIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQ 180
           ++  +LV F+V+G+L+L  L + +AFLEVIC LG  VF  IL+IR  W    + Q
Sbjct: 126 AMSPRLVSFAVDGILLLGSLSITRAFLEVICNLGGTVFTVILLIRLFWAAASFFQ 180

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BLAST of PI0014914 vs. ExPASy TrEMBL
Match: A0A1S3C0Q8 (uncharacterized protein LOC103495323 OS=Cucumis melo OX=3656 GN=LOC103495323 PE=4 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 2.5e-94
Identity = 193/205 (94.15%), Postives = 197/205 (96.10%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISHTLLRASRRTSNFSQGVDNLVDD 60
           MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQIS+TLLRA+RRTSNFSQGVDN VD+
Sbjct: 1   MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFVDE 60

Query: 61  RRNWNRSISSDFDLIGG-EEEEEEEEEDEDEEEDRSLDLLVRFVENVFRKVSRRARKAVR 120
           RRNWNR   SDFDLIGG EEEEEEEEED+DEEEDRSLDLLVRFVENVFRK SRRARKAVR
Sbjct: 61  RRNWNR---SDFDLIGGEEEEEEEEEEDDDEEEDRSLDLLVRFVENVFRKSSRRARKAVR 120

Query: 121 SVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQ 180
           SVLPQSIPTKLV FSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQ
Sbjct: 121 SVLPQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQ 180

Query: 181 DTRSHRLEQLDDDQHHAWTGAQPAS 205
           DTRSHRLEQ DDDQHHAWTGAQPAS
Sbjct: 181 DTRSHRLEQFDDDQHHAWTGAQPAS 202

[Close]

BLAST of PI0014914 vs. ExPASy TrEMBL
Match: A0A6J1JL13 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like OS=Cucurbita maxima OX=3661 GN=LOC111486160 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 7.5e-91
Identity = 181/204 (88.73%), Postives = 195/204 (95.59%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISHTLLRASRRTSNFSQGVDNLVDD 60
           MSLPA LSPPSL+SIP SQPP PTSRTS+LSH  QISHTLLRASRRTSNFSQGVD+LVDD
Sbjct: 1   MSLPAALSPPSLYSIPYSQPPLPTSRTSILSHSLQISHTLLRASRRTSNFSQGVDHLVDD 60

Query: 61  RRNWNRSISSDFDLIGGEEEEEEEEEDEDEEEDRSLDLLVRFVENVFRKVSRRARKAVRS 120
           RRNWNRSISSDFD+IGGE++E++E+E E+EEEDRSLDLLVRFVENVFRKVS+RARKAVRS
Sbjct: 61  RRNWNRSISSDFDIIGGEDDEDDEDE-ENEEEDRSLDLLVRFVENVFRKVSKRARKAVRS 120

Query: 121 VLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQD 180
           VLPQSIPTKLVGFSVNGVLMLAFLW+LKAFLEVICTLGTAVFVSILIIRGVW GILYLQD
Sbjct: 121 VLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVWTGILYLQD 180

Query: 181 TRSHRLEQLDDDQHHAWTGAQPAS 205
            RSHR ++LDDDQHHAWTGAQPAS
Sbjct: 181 IRSHRFDRLDDDQHHAWTGAQPAS 203

[Close]

BLAST of PI0014914 vs. ExPASy TrEMBL
Match: A0A6J1D3L5 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1 OS=Momordica charantia OX=3673 GN=LOC111017292 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 6.3e-90
Identity = 181/206 (87.86%), Postives = 194/206 (94.17%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQ--SQPPFPTSRTSLLSHPFQISHTLLRASRRTSNFSQGVDNLV 60
           MS PA LSPPSLFSIPQ   QP F +SRTSLLSHPFQISHTLLRASRR SNFSQGVDNLV
Sbjct: 1   MSFPAALSPPSLFSIPQYHFQPLFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLV 60

Query: 61  DDRRNWNRSISSDFDLIGGEEEEEEEEEDEDEEEDRSLDLLVRFVENVFRKVSRRARKAV 120
           DDRRNWNR ISSDFD++GGE++EE+EE++EDEEEDRSLDLLVRFVENVFRKVS+RARKAV
Sbjct: 61  DDRRNWNRPISSDFDIVGGEDDEEDEEDEEDEEEDRSLDLLVRFVENVFRKVSKRARKAV 120

Query: 121 RSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYL 180
           RSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFL+VICTLGTAVFVSILIIRGVW GILYL
Sbjct: 121 RSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLQVICTLGTAVFVSILIIRGVWTGILYL 180

Query: 181 QDTRSHRLEQLDDDQHHAWTGAQPAS 205
           QD RSHR +QLD++QHHAWTGAQPAS
Sbjct: 181 QDIRSHRFDQLDNEQHHAWTGAQPAS 206

[Close]

BLAST of PI0014914 vs. ExPASy TrEMBL
Match: A0A6J1GJK6 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like OS=Cucurbita moschata OX=3662 GN=LOC111454943 PE=4 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 1.1e-89
Identity = 184/204 (90.20%), Postives = 190/204 (93.14%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISHTLLRASRRTSNFSQGVDNLVDD 60
           MSL A  SPPSLF++PQ QPPFPTSRT LLSHPFQ+SH LLRASRR SNFSQGVD+ VDD
Sbjct: 1   MSLLAARSPPSLFAVPQYQPPFPTSRTWLLSHPFQVSHALLRASRRASNFSQGVDDPVDD 60

Query: 61  RRNWNRSISSDFDLIGGEEEEEEEEEDEDEEEDRSLDLLVRFVENVFRKVSRRARKAVRS 120
           RRNWN SI SDFDLIGG EEEEEEEEDEDEEEDRSLDLLV+FVENVFRKVSRRARKAVRS
Sbjct: 61  RRNWNGSIGSDFDLIGG-EEEEEEEEDEDEEEDRSLDLLVQFVENVFRKVSRRARKAVRS 120

Query: 121 VLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQD 180
           VLPQSIPTKLVGF VNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQD
Sbjct: 121 VLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQD 180

Query: 181 TRSHRLEQLDDDQHHAWTGAQPAS 205
            RSHRL+QLDDDQ HAWTGAQPAS
Sbjct: 181 IRSHRLDQLDDDQPHAWTGAQPAS 203

[Close]

BLAST of PI0014914 vs. ExPASy TrEMBL
Match: A0A0A0K2W4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G070780 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 5.4e-89
Identity = 186/205 (90.73%), Postives = 191/205 (93.17%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISHTLLRASRRTSNFSQGVDNLVDD 60
           MSLPAVLSPPSLFSIPQSQ PF TS TSLLSHP  IS+TLLRA+RRTSNFSQGVDN VDD
Sbjct: 1   MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD 60

Query: 61  RRNWNRSISSDFDLIGGEEEEEEEE-EDEDEEEDRSLDLLVRFVENVFRKVSRRARKAVR 120
           RRNWNR   SDFDLIGGEEEEEEEE EDE++EEDRSLDLLVRFVEN+FRK SRRARKAVR
Sbjct: 61  RRNWNR---SDFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVR 120

Query: 121 SVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQ 180
           SVLP SIPTKLV FSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQ
Sbjct: 121 SVLPPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQ 180

Query: 181 DTRSHRLEQLDDDQHHAWTGAQPAS 205
           DTRSHRL QLDDDQHHAWTGAQPAS
Sbjct: 181 DTRSHRLGQLDDDQHHAWTGAQPAS 202

[Close]

BLAST of PI0014914 vs. NCBI nr
Match: XP_038877542.1 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1 [Benincasa hispida])

HSP 1 Score: 362.5 bits (929), Expect = 2.5e-96
Identity = 191/204 (93.63%), Postives = 198/204 (97.06%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISHTLLRASRRTSNFSQGVDNLVDD 60
           MSL A LSPPSLFSIPQSQPPFPTSRTSLLSHPFQISHTLLRASRRTSNFSQGVDNLVDD
Sbjct: 1   MSLSAALSPPSLFSIPQSQPPFPTSRTSLLSHPFQISHTLLRASRRTSNFSQGVDNLVDD 60

Query: 61  RRNWNRSISSDFDLIGGEEEEEEEEEDEDEEEDRSLDLLVRFVENVFRKVSRRARKAVRS 120
           RRNWNRSI SDFDLIGGEEEE++++EDEDEEEDRSLDLLVRFVENVFRKVSRRARKAVRS
Sbjct: 61  RRNWNRSIGSDFDLIGGEEEEDDDDEDEDEEEDRSLDLLVRFVENVFRKVSRRARKAVRS 120

Query: 121 VLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQD 180
           VLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVF+SILIIRGVW GILYLQD
Sbjct: 121 VLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFLSILIIRGVWTGILYLQD 180

Query: 181 TRSHRLEQLDDDQHHAWTGAQPAS 205
           TR+HRL+QLDDDQH AWTGAQP S
Sbjct: 181 TRTHRLDQLDDDQHRAWTGAQPVS 204

[Close]

BLAST of PI0014914 vs. NCBI nr
Match: XP_008455053.1 (PREDICTED: uncharacterized protein LOC103495323 [Cucumis melo])

HSP 1 Score: 354.8 bits (909), Expect = 5.1e-94
Identity = 193/205 (94.15%), Postives = 197/205 (96.10%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISHTLLRASRRTSNFSQGVDNLVDD 60
           MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQIS+TLLRA+RRTSNFSQGVDN VD+
Sbjct: 1   MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFVDE 60

Query: 61  RRNWNRSISSDFDLIGG-EEEEEEEEEDEDEEEDRSLDLLVRFVENVFRKVSRRARKAVR 120
           RRNWNR   SDFDLIGG EEEEEEEEED+DEEEDRSLDLLVRFVENVFRK SRRARKAVR
Sbjct: 61  RRNWNR---SDFDLIGGEEEEEEEEEEDDDEEEDRSLDLLVRFVENVFRKSSRRARKAVR 120

Query: 121 SVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQ 180
           SVLPQSIPTKLV FSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQ
Sbjct: 121 SVLPQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQ 180

Query: 181 DTRSHRLEQLDDDQHHAWTGAQPAS 205
           DTRSHRLEQ DDDQHHAWTGAQPAS
Sbjct: 181 DTRSHRLEQFDDDQHHAWTGAQPAS 202

[Close]

BLAST of PI0014914 vs. NCBI nr
Match: XP_022988955.1 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita maxima])

HSP 1 Score: 343.2 bits (879), Expect = 1.5e-90
Identity = 181/204 (88.73%), Postives = 195/204 (95.59%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISHTLLRASRRTSNFSQGVDNLVDD 60
           MSLPA LSPPSL+SIP SQPP PTSRTS+LSH  QISHTLLRASRRTSNFSQGVD+LVDD
Sbjct: 1   MSLPAALSPPSLYSIPYSQPPLPTSRTSILSHSLQISHTLLRASRRTSNFSQGVDHLVDD 60

Query: 61  RRNWNRSISSDFDLIGGEEEEEEEEEDEDEEEDRSLDLLVRFVENVFRKVSRRARKAVRS 120
           RRNWNRSISSDFD+IGGE++E++E+E E+EEEDRSLDLLVRFVENVFRKVS+RARKAVRS
Sbjct: 61  RRNWNRSISSDFDIIGGEDDEDDEDE-ENEEEDRSLDLLVRFVENVFRKVSKRARKAVRS 120

Query: 121 VLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQD 180
           VLPQSIPTKLVGFSVNGVLMLAFLW+LKAFLEVICTLGTAVFVSILIIRGVW GILYLQD
Sbjct: 121 VLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVWTGILYLQD 180

Query: 181 TRSHRLEQLDDDQHHAWTGAQPAS 205
            RSHR ++LDDDQHHAWTGAQPAS
Sbjct: 181 IRSHRFDRLDDDQHHAWTGAQPAS 203

[Close]

BLAST of PI0014914 vs. NCBI nr
Match: XP_022148690.1 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1 [Momordica charantia])

HSP 1 Score: 340.1 bits (871), Expect = 1.3e-89
Identity = 181/206 (87.86%), Postives = 194/206 (94.17%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQ--SQPPFPTSRTSLLSHPFQISHTLLRASRRTSNFSQGVDNLV 60
           MS PA LSPPSLFSIPQ   QP F +SRTSLLSHPFQISHTLLRASRR SNFSQGVDNLV
Sbjct: 1   MSFPAALSPPSLFSIPQYHFQPLFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLV 60

Query: 61  DDRRNWNRSISSDFDLIGGEEEEEEEEEDEDEEEDRSLDLLVRFVENVFRKVSRRARKAV 120
           DDRRNWNR ISSDFD++GGE++EE+EE++EDEEEDRSLDLLVRFVENVFRKVS+RARKAV
Sbjct: 61  DDRRNWNRPISSDFDIVGGEDDEEDEEDEEDEEEDRSLDLLVRFVENVFRKVSKRARKAV 120

Query: 121 RSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYL 180
           RSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFL+VICTLGTAVFVSILIIRGVW GILYL
Sbjct: 121 RSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLQVICTLGTAVFVSILIIRGVWTGILYL 180

Query: 181 QDTRSHRLEQLDDDQHHAWTGAQPAS 205
           QD RSHR +QLD++QHHAWTGAQPAS
Sbjct: 181 QDIRSHRFDQLDNEQHHAWTGAQPAS 206

[Close]

BLAST of PI0014914 vs. NCBI nr
Match: XP_022952196.1 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita moschata] >XP_022952197.1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita moschata])

HSP 1 Score: 339.3 bits (869), Expect = 2.2e-89
Identity = 184/204 (90.20%), Postives = 190/204 (93.14%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISHTLLRASRRTSNFSQGVDNLVDD 60
           MSL A  SPPSLF++PQ QPPFPTSRT LLSHPFQ+SH LLRASRR SNFSQGVD+ VDD
Sbjct: 1   MSLLAARSPPSLFAVPQYQPPFPTSRTWLLSHPFQVSHALLRASRRASNFSQGVDDPVDD 60

Query: 61  RRNWNRSISSDFDLIGGEEEEEEEEEDEDEEEDRSLDLLVRFVENVFRKVSRRARKAVRS 120
           RRNWN SI SDFDLIGG EEEEEEEEDEDEEEDRSLDLLV+FVENVFRKVSRRARKAVRS
Sbjct: 61  RRNWNGSIGSDFDLIGG-EEEEEEEEDEDEEEDRSLDLLVQFVENVFRKVSRRARKAVRS 120

Query: 121 VLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQD 180
           VLPQSIPTKLVGF VNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQD
Sbjct: 121 VLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQD 180

Query: 181 TRSHRLEQLDDDQHHAWTGAQPAS 205
            RSHRL+QLDDDQ HAWTGAQPAS
Sbjct: 181 IRSHRLDQLDDDQPHAWTGAQPAS 203

[Close]

BLAST of PI0014914 vs. TAIR 10
Match: AT4G33780.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: short hypocotyl in white light1 (TAIR:AT1G69935.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 186.8 bits (473), Expect = 1.7e-47
Identity = 111/203 (54.68%), Postives = 143/203 (70.44%), Query Frame = 0


Query: 2   SLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISHTLLRASRRTSNFSQGVDNLVDDR 61
           S+  + SP S F        F  +RT +   P+        ASRR+ +F  G D+  DD 
Sbjct: 13  SVALLRSPLSFFIFTPKTLIF--TRTRISGFPY-------LASRRSRDFINGRDDFADDT 72

Query: 62  RNWNRSISSDFDLIGGEEEEEEEEEDEDEEEDRSLDLLVRFVENVFRKVSRRARKAVRSV 121
           R+WNR I  ++     E+ + EE++D+ EEEDRSLDLL+RFVENVFRK+S+RARKAVRS+
Sbjct: 73  RSWNRKIKPEYGF--DEDYDGEEDDDDHEEEDRSLDLLLRFVENVFRKISKRARKAVRSI 132

Query: 122 LPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDT 181
           LP SI TKLVGFSVNGVL+LAFLW+LKAFLEV CTLGT VF SIL+IRG+W G+ Y+Q++
Sbjct: 133 LPVSISTKLVGFSVNGVLILAFLWILKAFLEVACTLGTIVFTSILLIRGLWAGVAYMQES 192

Query: 182 RSHRLEQLDDDQHHAWTGAQPAS 205
           R++R+ +L DD   AW G QP S
Sbjct: 193 RNNRINELADDP-RAWNGMQPVS 203

[Close]

BLAST of PI0014914 vs. TAIR 10
Match: AT1G69935.1 (short hypocotyl in white light1 )

HSP 1 Score: 84.3 bits (207), Expect = 1.2e-16
Identity = 63/175 (36.00%), Postives = 100/175 (57.14%), Query Frame = 0


Query: 27  TSLLSHPFQISHTLLRASRRTSNFSQGVDNLVDDRRNW---NRSIS-----------SDF 86
           T+L S     S TL+ AS R  + +    N +  RR +   NRS++           SD 
Sbjct: 6   TTLSSSSSSPSLTLINASHRFVSVTPFSSNSIFLRRRFRRLNRSLASSSSHSRRRYESDD 65

Query: 87  DLIGG--------EEEEEEEEEDEDEEEDRSLDLLVRFVENVFRKVSRRARKAVRSVLPQ 146
              GG        +++   +++DE++E + S+DLL+RF+ ++F+KVS+R +KA R +LP 
Sbjct: 66  RFFGGGDNYDVVPDDDGFSDDDDEEDERESSVDLLIRFLRSMFKKVSKRTKKASRRILPA 125

Query: 147 SIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQ 180
           ++  +LV F+V+G+L+L  L + +AFLEVIC LG  VF  IL+IR  W    + Q
Sbjct: 126 AMSPRLVSFAVDGILLLGSLSITRAFLEVICNLGGTVFTVILLIRLFWAAASFFQ 180

The following BLAST results are available for this feature:

BLAST of PI0014914 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4I3V6	1.7e-15	36.00	Protein SHORT HYPOCOTYL IN WHITE LIGHT 1 OS=Arabidopsis thaliana OX=3702 GN=SHW1...	[more]

BLAST of PI0014914 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C0Q8	2.5e-94	94.15	uncharacterized protein LOC103495323 OS=Cucumis melo OX=3656 GN=LOC103495323 PE=...	[more]
A0A6J1JL13	7.5e-91	88.73	protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1D3L5	6.3e-90	87.86	protein SHORT HYPOCOTYL IN WHITE LIGHT 1 OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1GJK6	1.1e-89	90.20	protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A0A0K2W4	5.4e-89	90.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G070780 PE=4 SV=1	[more]

BLAST of PI0014914 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877542.1	2.5e-96	93.63	protein SHORT HYPOCOTYL IN WHITE LIGHT 1 [Benincasa hispida]	[more]
XP_008455053.1	5.1e-94	94.15	PREDICTED: uncharacterized protein LOC103495323 [Cucumis melo]	[more]
XP_022988955.1	1.5e-90	88.73	protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita maxima]	[more]
XP_022148690.1	1.3e-89	87.86	protein SHORT HYPOCOTYL IN WHITE LIGHT 1 [Momordica charantia]	[more]
XP_022952196.1	2.2e-89	90.20	protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita moschata] >XP_022952197...	[more]

BLAST of PI0014914 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G33780.1	1.7e-47	54.68	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G69935.1	1.2e-16	36.00	short hypocotyl in white light1	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039324	Protein SHORT HYPOCOTYL IN WHITE LIGHT 1	PANTHER	PTHR35474	ATP PHOSPHORIBOSYLTRANSFERASE REGULATORY SUBUNIT	coord: 21..204
None	No IPR available	PANTHER	PTHR35474:SF1	ATP PHOSPHORIBOSYLTRANSFERASE REGULATORY SUBUNIT	coord: 21..204

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0014914.1	PI0014914.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010100	negative regulation of photomorphogenesis
biological_process	GO:0009787	regulation of abscisic acid-activated signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016757	glycosyltransferase activity