PI0014596 (gene) Melon (PI 482460) v1

Overview


Name	PI0014596
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr06: 788441 .. 789270 (-)
RNA-Seq Expression	PI0014596
Synteny	PI0014596

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCGGACATAACATAACGGCTACGACAATAGATTGTCAGATCAAGACATTGAAAAGAGCGTTCCAAGCGATATTTGAGATGAGGGGCCCGACGTGTAGTGGGTTCGGTTGGAATGATGAGCTGAAATGCATCATTGCCGAGAAAGACTTGTTCGACAGTTGGGTGAAGGTATGTTCTTTATTCTGTCAATTACTGTTCCTTTCTAATTATAAATTGTCTAATTTGTTACCATAATAACACGTGTACAGAGTCATCCAGCCGCAAAGGGCCTCCTAAACAAACCCTTTCCCCACTACGACGACCTTTGCTACGTGTTCGGAAGAGATCGTGCAACAGGAGGTCGAGCTGAAACCTTCAGTGATGTTGGGTCGAACGTGCCTCCAGGCTTCGAAGGGTTTGCCCAGTACGACGGGTACGATGTGGAGAACCCGGCGATGTGCAGTCAGGGCCTAGACATGTCACCTGACGACATAATGACTCCAAGATCGGTTCGTATATCTGAGGGTAGGCCTGGTTCGAGCGGGTCGAAGAGGAAACATGGAGGGCAGGCATTGGAGGCGGCTGAAATTATTCGCAGTGCCATGGAATATGCAAATGACCAACTTAAGGCAATTGCAGAATGGCCCAAGGAACAACGGCAAGATGCAAGTGTGACACGTGCGGAAGTTGTTAGACAGCTACAGGGAATGCCGGAGCTGAGTCGACTAGATAGGGCTCGTTGTATGCGCATATTGATGCGCAGCGTGGATGACATGAAAGCATTTTTAGACGTCCCGGACGAGGTTAAGTTGGATTACTGCACGGTCGTACTCCAAGATGACGCTTGA

mRNA sequence

ATGCCCGGACATAACATAACGGCTACGACAATAGATTGTCAGATCAAGACATTGAAAAGAGCGTTCCAAGCGATATTTGAGATGAGGGGCCCGACGTGTAGTGGGTTCGGTTGGAATGATGAGCTGAAATGCATCATTGCCGAGAAAGACTTGTTCGACAGTTGGGTGAAGAGTCATCCAGCCGCAAAGGGCCTCCTAAACAAACCCTTTCCCCACTACGACGACCTTTGCTACGTGTTCGGAAGAGATCGTGCAACAGGAGGTCGAGCTGAAACCTTCAGTGATGTTGGGTCGAACGTGCCTCCAGGCTTCGAAGGGTTTGCCCAGTACGACGGGTACGATGTGGAGAACCCGGCGATGTGCAGTCAGGGCCTAGACATGTCACCTGACGACATAATGACTCCAAGATCGGTTCGTATATCTGAGGGTAGGCCTGGTTCGAGCGGGTCGAAGAGGAAACATGGAGGGCAGGCATTGGAGGCGGCTGAAATTATTCGCAGTGCCATGGAATATGCAAATGACCAACTTAAGGCAATTGCAGAATGGCCCAAGGAACAACGGCAAGATGCAAGTGTGACACGTGCGGAAGTTGTTAGACAGCTACAGGGAATGCCGGAGCTGAGTCGACTAGATAGGGCTCGTTGTATGCGCATATTGATGCGCAGCGTGGATGACATGAAAGCATTTTTAGACGTCCCGGACGAGGTTAAGTTGGATTACTGCACGGTCGTACTCCAAGATGACGCTTGA

Coding sequence (CDS)

ATGCCCGGACATAACATAACGGCTACGACAATAGATTGTCAGATCAAGACATTGAAAAGAGCGTTCCAAGCGATATTTGAGATGAGGGGCCCGACGTGTAGTGGGTTCGGTTGGAATGATGAGCTGAAATGCATCATTGCCGAGAAAGACTTGTTCGACAGTTGGGTGAAGAGTCATCCAGCCGCAAAGGGCCTCCTAAACAAACCCTTTCCCCACTACGACGACCTTTGCTACGTGTTCGGAAGAGATCGTGCAACAGGAGGTCGAGCTGAAACCTTCAGTGATGTTGGGTCGAACGTGCCTCCAGGCTTCGAAGGGTTTGCCCAGTACGACGGGTACGATGTGGAGAACCCGGCGATGTGCAGTCAGGGCCTAGACATGTCACCTGACGACATAATGACTCCAAGATCGGTTCGTATATCTGAGGGTAGGCCTGGTTCGAGCGGGTCGAAGAGGAAACATGGAGGGCAGGCATTGGAGGCGGCTGAAATTATTCGCAGTGCCATGGAATATGCAAATGACCAACTTAAGGCAATTGCAGAATGGCCCAAGGAACAACGGCAAGATGCAAGTGTGACACGTGCGGAAGTTGTTAGACAGCTACAGGGAATGCCGGAGCTGAGTCGACTAGATAGGGCTCGTTGTATGCGCATATTGATGCGCAGCGTGGATGACATGAAAGCATTTTTAGACGTCCCGGACGAGGTTAAGTTGGATTACTGCACGGTCGTACTCCAAGATGACGCTTGA

Protein sequence

MPGHNITATTIDCQIKTLKRAFQAIFEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFSDVGSNVPPGFEGFAQYDGYDVENPAMCSQGLDMSPDDIMTPRSVRISEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIAEWPKEQRQDASVTRAEVVRQLQGMPELSRLDRARCMRILMRSVDDMKAFLDVPDEVKLDYCTVVLQDDA

Homology

[Close]

BLAST of PI0014596 vs. ExPASy TrEMBL
Match: A0A5A7U4M2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold404G00330 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 2.2e-84
Identity = 153/248 (61.69%), Postives = 194/248 (78.23%), Query Frame = 0


Query: 1   MPGHNITATTIDCQIKTLKRAFQAIFEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHP 60
           +PG NI A+TID +IK +KR F A+ +MR P CSGFGWNDE KCIIAEK++FD WVKSHP
Sbjct: 6   IPGCNIHASTIDSRIKLMKRMFHALADMRDPNCSGFGWNDEKKCIIAEKEVFDDWVKSHP 65

Query: 61  AAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFSDVGSNVPPGFEGFAQYDGYDVENPAM 120
           AAKGLLNK F HYD+L YVFG+DRATGGRAE+F+D+GSN P G++ FA     D + P M
Sbjct: 66  AAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPAGYDAFAADTVLDTDFPPM 125

Query: 121 CSQGLDMSPDDIMTPRSVRISEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIA 180
            S GL+MSPDD+M  R+ R+SE R  SSGSK K  G A ++ +I+R+A+EY N+QL  IA
Sbjct: 126 YSPGLNMSPDDLMETRTARVSERRNVSSGSKWKRPGHATDSGDIVRTAIEYGNEQLHRIA 185

Query: 181 EWPKEQRQDASVTRAEVVRQLQGMPELSRLDRARCMRILMRSVDDMKAFLDVPDEVKLDY 240
           EWP  QRQDA+ TR E+VRQL+ +PEL+ +DR R MRI+MR+VDDMKAFL VPD +K  Y
Sbjct: 186 EWPILQRQDATQTRQEIVRQLEAIPELTLMDRCRLMRIIMRNVDDMKAFLKVPDNMKYPY 245

Query: 241 CTVVLQDD 249
           C+++LQ++
Sbjct: 246 CSIILQEN 253

[Close]

BLAST of PI0014596 vs. ExPASy TrEMBL
Match: A0A5A7VF53 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00250 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 1.1e-83
Identity = 153/248 (61.69%), Postives = 195/248 (78.63%), Query Frame = 0


Query: 1   MPGHNITATTIDCQIKTLKRAFQAIFEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHP 60
           +PG NI A+TID +IK +KR F A+ EMRGP CSGFGWNDE KCI+AEK++FD W  SHP
Sbjct: 52  IPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHP 111

Query: 61  AAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFSDVGSNVPPGFEGFAQYDGYDVENPAM 120
           AAKGLLNK F HYD+L YVFG+DRATGGRAE+F+D+GSN PPG++ FA     D + P M
Sbjct: 112 AAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAVPDTDFPPM 171

Query: 121 CSQGLDMSPDDIMTPRSVRISEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIA 180
            S GL+MSPDD+M  R+ R+SE R  SS SKRK  G A ++ +I+R+A+EY N+QL  IA
Sbjct: 172 YSPGLNMSPDDLMETRTARVSERRNVSSESKRKRPGHATDSGDIVRTAIEYGNEQLHRIA 231

Query: 181 EWPKEQRQDASVTRAEVVRQLQGMPELSRLDRARCMRILMRSVDDMKAFLDVPDEVKLDY 240
           EWP  QRQDA+ TR ++VRQL+ +PEL+ +DR R MRILMR+VDDMKAFL+VPD +K  Y
Sbjct: 232 EWPILQRQDATQTRQDIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYPY 291

Query: 241 CTVVLQDD 249
           C+++LQ++
Sbjct: 292 CSIILQEN 297

[Close]

BLAST of PI0014596 vs. ExPASy TrEMBL
Match: A0A5D3DPR5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00580 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 1.4e-83
Identity = 153/248 (61.69%), Postives = 194/248 (78.23%), Query Frame = 0


Query: 1   MPGHNITATTIDCQIKTLKRAFQAIFEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHP 60
           +PG NI A+TID +IK +KR F A+ EMRGP CSGFGWNDE KCI+AEK++FD W  SHP
Sbjct: 56  IPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHP 115

Query: 61  AAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFSDVGSNVPPGFEGFAQYDGYDVENPAM 120
           AAKGLLNK F HYD+L YVFG+DRATGGRAE+F+D+GSN PPG++  A     D + P M
Sbjct: 116 AAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAVAADAMPDTDFPPM 175

Query: 121 CSQGLDMSPDDIMTPRSVRISEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIA 180
            S GL+MSPDD+M  R+ R+SE R  SSGSKRK  G A ++ +I+R+A+EY N+QL  IA
Sbjct: 176 YSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIA 235

Query: 181 EWPKEQRQDASVTRAEVVRQLQGMPELSRLDRARCMRILMRSVDDMKAFLDVPDEVKLDY 240
           EWP  QRQDA+ TR E+VR L+ +PEL+ +DR R MRILMR+VDDMKAFL+VPD +K  Y
Sbjct: 236 EWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPY 295

Query: 241 CTVVLQDD 249
           C+++LQ++
Sbjct: 296 CSLILQEN 301

[Close]

BLAST of PI0014596 vs. ExPASy TrEMBL
Match: A0A5A7TXU5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00810 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 1.4e-83
Identity = 153/248 (61.69%), Postives = 194/248 (78.23%), Query Frame = 0


Query: 1   MPGHNITATTIDCQIKTLKRAFQAIFEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHP 60
           +PG NI A+TID +IK +KR F A+ EMRGP CSGFGWNDE KCI+AEK++FD W  SHP
Sbjct: 52  IPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHP 111

Query: 61  AAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFSDVGSNVPPGFEGFAQYDGYDVENPAM 120
           AAKGLLNK F HYD+L YVFG+DRATGGRAE+F+D+GSN PPG++  A     D + P M
Sbjct: 112 AAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAVAADAMPDTDFPPM 171

Query: 121 CSQGLDMSPDDIMTPRSVRISEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIA 180
            S GL+MSPDD+M  R+ R+SE R  SSGSKRK  G A ++ +I+R+A+EY N+QL  IA
Sbjct: 172 YSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIA 231

Query: 181 EWPKEQRQDASVTRAEVVRQLQGMPELSRLDRARCMRILMRSVDDMKAFLDVPDEVKLDY 240
           EWP  QRQDA+ TR E+VR L+ +PEL+ +DR R MRILMR+VDDMKAFL+VPD +K  Y
Sbjct: 232 EWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPY 291

Query: 241 CTVVLQDD 249
           C+++LQ++
Sbjct: 292 CSLILQEN 297

[Close]

BLAST of PI0014596 vs. ExPASy TrEMBL
Match: A0A5A7SWD8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G00010 PE=3 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 1.8e-83
Identity = 153/248 (61.69%), Postives = 195/248 (78.63%), Query Frame = 0


Query: 1   MPGHNITATTIDCQIKTLKRAFQAIFEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHP 60
           +PG NI A+TID +IK +KR F A+ EMRGP CSGFGWNDE KCI+AEK++FD W  SHP
Sbjct: 398 IPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHP 457

Query: 61  AAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFSDVGSNVPPGFEGFAQYDGYDVENPAM 120
           AAKGLLNK F HYD+L YVFG+DRATGGRAE+F+D+GSN PPG++ FA     D +   M
Sbjct: 458 AAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNNPPGYDAFAADAVPDTDFSPM 517

Query: 121 CSQGLDMSPDDIMTPRSVRISEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIA 180
            S GL+MSPDD+M  R+ R+SE R  SSGSKRK  G A ++ +I+R+A+EY N+QL  IA
Sbjct: 518 YSLGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIA 577

Query: 181 EWPKEQRQDASVTRAEVVRQLQGMPELSRLDRARCMRILMRSVDDMKAFLDVPDEVKLDY 240
           EWP  QRQDA+ TR E+V+QL+ +PEL+ +DR R MRILMR+VDDMKAFL+VPD +K  Y
Sbjct: 578 EWPILQRQDATQTRQEIVQQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYPY 637

Query: 241 CTVVLQDD 249
           C+++LQ++
Sbjct: 638 CSIILQEN 643

[Close]

BLAST of PI0014596 vs. NCBI nr
Match: KAA0050782.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 322.0 bits (824), Expect = 4.5e-84
Identity = 153/248 (61.69%), Postives = 194/248 (78.23%), Query Frame = 0


Query: 1   MPGHNITATTIDCQIKTLKRAFQAIFEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHP 60
           +PG NI A+TID +IK +KR F A+ +MR P CSGFGWNDE KCIIAEK++FD WVKSHP
Sbjct: 6   IPGCNIHASTIDSRIKLMKRMFHALADMRDPNCSGFGWNDEKKCIIAEKEVFDDWVKSHP 65

Query: 61  AAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFSDVGSNVPPGFEGFAQYDGYDVENPAM 120
           AAKGLLNK F HYD+L YVFG+DRATGGRAE+F+D+GSN P G++ FA     D + P M
Sbjct: 66  AAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPAGYDAFAADTVLDTDFPPM 125

Query: 121 CSQGLDMSPDDIMTPRSVRISEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIA 180
            S GL+MSPDD+M  R+ R+SE R  SSGSK K  G A ++ +I+R+A+EY N+QL  IA
Sbjct: 126 YSPGLNMSPDDLMETRTARVSERRNVSSGSKWKRPGHATDSGDIVRTAIEYGNEQLHRIA 185

Query: 181 EWPKEQRQDASVTRAEVVRQLQGMPELSRLDRARCMRILMRSVDDMKAFLDVPDEVKLDY 240
           EWP  QRQDA+ TR E+VRQL+ +PEL+ +DR R MRI+MR+VDDMKAFL VPD +K  Y
Sbjct: 186 EWPILQRQDATQTRQEIVRQLEAIPELTLMDRCRLMRIIMRNVDDMKAFLKVPDNMKYPY 245

Query: 241 CTVVLQDD 249
           C+++LQ++
Sbjct: 246 CSIILQEN 253

[Close]

BLAST of PI0014596 vs. NCBI nr
Match: KAA0065737.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 319.7 bits (818), Expect = 2.2e-83
Identity = 153/248 (61.69%), Postives = 195/248 (78.63%), Query Frame = 0


Query: 1   MPGHNITATTIDCQIKTLKRAFQAIFEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHP 60
           +PG NI A+TID +IK +KR F A+ EMRGP CSGFGWNDE KCI+AEK++FD W  SHP
Sbjct: 52  IPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHP 111

Query: 61  AAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFSDVGSNVPPGFEGFAQYDGYDVENPAM 120
           AAKGLLNK F HYD+L YVFG+DRATGGRAE+F+D+GSN PPG++ FA     D + P M
Sbjct: 112 AAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAVPDTDFPPM 171

Query: 121 CSQGLDMSPDDIMTPRSVRISEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIA 180
            S GL+MSPDD+M  R+ R+SE R  SS SKRK  G A ++ +I+R+A+EY N+QL  IA
Sbjct: 172 YSPGLNMSPDDLMETRTARVSERRNVSSESKRKRPGHATDSGDIVRTAIEYGNEQLHRIA 231

Query: 181 EWPKEQRQDASVTRAEVVRQLQGMPELSRLDRARCMRILMRSVDDMKAFLDVPDEVKLDY 240
           EWP  QRQDA+ TR ++VRQL+ +PEL+ +DR R MRILMR+VDDMKAFL+VPD +K  Y
Sbjct: 232 EWPILQRQDATQTRQDIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYPY 291

Query: 241 CTVVLQDD 249
           C+++LQ++
Sbjct: 292 CSIILQEN 297

[Close]

BLAST of PI0014596 vs. NCBI nr
Match: KAA0035621.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0041647.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0046728.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0052099.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0054495.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 319.3 bits (817), Expect = 2.9e-83
Identity = 153/248 (61.69%), Postives = 194/248 (78.23%), Query Frame = 0


Query: 1   MPGHNITATTIDCQIKTLKRAFQAIFEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHP 60
           +PG NI A+TID +IK +KR F A+ EMRGP CSGFGWNDE KCI+AEK++FD W  SHP
Sbjct: 56  IPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHP 115

Query: 61  AAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFSDVGSNVPPGFEGFAQYDGYDVENPAM 120
           AAKGLLNK F HYD+L YVFG+DRATGGRAE+F+D+GSN PPG++  A     D + P M
Sbjct: 116 AAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAVAADAMPDTDFPPM 175

Query: 121 CSQGLDMSPDDIMTPRSVRISEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIA 180
            S GL+MSPDD+M  R+ R+SE R  SSGSKRK  G A ++ +I+R+A+EY N+QL  IA
Sbjct: 176 YSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIA 235

Query: 181 EWPKEQRQDASVTRAEVVRQLQGMPELSRLDRARCMRILMRSVDDMKAFLDVPDEVKLDY 240
           EWP  QRQDA+ TR E+VR L+ +PEL+ +DR R MRILMR+VDDMKAFL+VPD +K  Y
Sbjct: 236 EWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPY 295

Query: 241 CTVVLQDD 249
           C+++LQ++
Sbjct: 296 CSLILQEN 301

[Close]

BLAST of PI0014596 vs. NCBI nr
Match: KAA0048362.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 319.3 bits (817), Expect = 2.9e-83
Identity = 153/248 (61.69%), Postives = 194/248 (78.23%), Query Frame = 0


Query: 1   MPGHNITATTIDCQIKTLKRAFQAIFEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHP 60
           +PG NI A+TID +IK +KR F A+ EMRGP CSGFGWNDE KCI+AEK++FD W  SHP
Sbjct: 52  IPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHP 111

Query: 61  AAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFSDVGSNVPPGFEGFAQYDGYDVENPAM 120
           AAKGLLNK F HYD+L YVFG+DRATGGRAE+F+D+GSN PPG++  A     D + P M
Sbjct: 112 AAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAVAADAMPDTDFPPM 171

Query: 121 CSQGLDMSPDDIMTPRSVRISEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIA 180
            S GL+MSPDD+M  R+ R+SE R  SSGSKRK  G A ++ +I+R+A+EY N+QL  IA
Sbjct: 172 YSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIA 231

Query: 181 EWPKEQRQDASVTRAEVVRQLQGMPELSRLDRARCMRILMRSVDDMKAFLDVPDEVKLDY 240
           EWP  QRQDA+ TR E+VR L+ +PEL+ +DR R MRILMR+VDDMKAFL+VPD +K  Y
Sbjct: 232 EWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPY 291

Query: 241 CTVVLQDD 249
           C+++LQ++
Sbjct: 292 CSLILQEN 297

[Close]

BLAST of PI0014596 vs. NCBI nr
Match: KAA0034843.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 318.9 bits (816), Expect = 3.8e-83
Identity = 153/248 (61.69%), Postives = 195/248 (78.63%), Query Frame = 0


Query: 1   MPGHNITATTIDCQIKTLKRAFQAIFEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHP 60
           +PG NI A+TID +IK +KR F A+ EMRGP CSGFGWNDE KCI+AEK++FD W  SHP
Sbjct: 398 IPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHP 457

Query: 61  AAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFSDVGSNVPPGFEGFAQYDGYDVENPAM 120
           AAKGLLNK F HYD+L YVFG+DRATGGRAE+F+D+GSN PPG++ FA     D +   M
Sbjct: 458 AAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNNPPGYDAFAADAVPDTDFSPM 517

Query: 121 CSQGLDMSPDDIMTPRSVRISEGRPGSSGSKRKHGGQALEAAEIIRSAMEYANDQLKAIA 180
            S GL+MSPDD+M  R+ R+SE R  SSGSKRK  G A ++ +I+R+A+EY N+QL  IA
Sbjct: 518 YSLGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIA 577

Query: 181 EWPKEQRQDASVTRAEVVRQLQGMPELSRLDRARCMRILMRSVDDMKAFLDVPDEVKLDY 240
           EWP  QRQDA+ TR E+V+QL+ +PEL+ +DR R MRILMR+VDDMKAFL+VPD +K  Y
Sbjct: 578 EWPILQRQDATQTRQEIVQQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYPY 637

Query: 241 CTVVLQDD 249
           C+++LQ++
Sbjct: 638 CSIILQEN 643

[Close]

BLAST of PI0014596 vs. TAIR 10
Match: AT1G30140.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27260.1); Has 313 Blast hits to 256 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 295; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 57.4 bits (137), Expect = 1.9e-08
Identity = 27/82 (32.93%), Postives = 46/82 (56.10%), Query Frame = 0


Query: 14  QIKTLKRAFQAIFEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHY 73
           ++K LK  +Q+  +++    SGFGW+ E K   A  +++  ++K+HP  K +  +   H+
Sbjct: 69  RLKFLKNLYQSYLDLK-RFSSGFGWDPETKKFTAPDEVWRDYLKAHPNHKHMQTESIDHF 128

Query: 74  DDLCYVFGRDRATGGRAETFSD 96
           +DL  +FG   ATG  A   SD
Sbjct: 129 EDLQIIFGDVVATGSFAVGMSD 149

[Close]

BLAST of PI0014596 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 55.8 bits (133), Expect = 5.6e-08
Identity = 22/77 (28.57%), Postives = 43/77 (55.84%), Query Frame = 0


Query: 5   NITATTIDCQIKTLKRAFQAIFEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKG 64
           N     +  + K+L+R F AI  +      GF W++E + + A+ +++  ++K+H  A+ 
Sbjct: 231 NFDVDVLKNRYKSLRRQFNAIKSIL--RSDGFAWDNERQMVTADNNVWQDYIKAHRDARQ 290

Query: 65  LLNKPFPHYDDLCYVFG 82
            + +P P+Y DLC + G
Sbjct: 291 FMTRPIPYYKDLCVLCG 305

[Close]

BLAST of PI0014596 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 55.8 bits (133), Expect = 5.6e-08
Identity = 22/77 (28.57%), Postives = 43/77 (55.84%), Query Frame = 0


Query: 5   NITATTIDCQIKTLKRAFQAIFEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKG 64
           N     +  + K+L+R F AI  +      GF W++E + + A+ +++  ++K+H  A+ 
Sbjct: 231 NFDVDVLKNRYKSLRRQFNAIKSIL--RSDGFAWDNERQMVTADNNVWQDYIKAHRDARQ 290

Query: 65  LLNKPFPHYDDLCYVFG 82
            + +P P+Y DLC + G
Sbjct: 291 FMTRPIPYYKDLCVLCG 305

[Close]

BLAST of PI0014596 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-07
Identity = 17/54 (31.48%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 34  SGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCYVFGRDRATG 88
           +GF W+     +IA+ D++++++++HP A+    K  P Y +LC++FG++ + G
Sbjct: 399 NGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKTIPSYPNLCFIFGKETSDG 452

[Close]

BLAST of PI0014596 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 7.6e-05
Identity = 17/53 (32.08%), Postives = 30/53 (56.60%), Query Frame = 0


Query: 35  GFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCYVFGRDRATG 88
           GF W+   + +I +  L+  ++K+HP A+    KP  ++ DLC ++G   A G
Sbjct: 88  GFVWDQTHQTVIGDDSLWSLYLKAHPEARVYKTKPVLNFSDLCLIYGYTVADG 140

The following BLAST results are available for this feature:

BLAST of PI0014596 vs.


Match Name	E-value	Identity	Description

BLAST of PI0014596 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U4M2	2.2e-84	61.69	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VF53	1.1e-83	61.69	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DPR5	1.4e-83	61.69	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TXU5	1.4e-83	61.69	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SWD8	1.8e-83	61.69	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of PI0014596 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050782.1	4.5e-84	61.69	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0065737.1	2.2e-83	61.69	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0035621.1	2.9e-83	61.69	retrotransposon protein [Cucumis melo var. makuwa] >KAA0041647.1 retrotransposon...	[more]
KAA0048362.1	2.9e-83	61.69	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0034843.1	3.8e-83	61.69	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0014596 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G30140.1	1.9e-08	32.93	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.1	5.6e-08	28.57	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.2	5.6e-08	28.57	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G24960.2	1.2e-07	31.48	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G24960.1	7.6e-05	32.08	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 2..247

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0014596.1	PI0014596.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding