PI0014533 (gene) Melon (PI 482460) v1

Overview


Name	PI0014533
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon gag protein
Location	chr09: 13213671 .. 13215299 (+)
RNA-Seq Expression	PI0014533
Synteny	PI0014533

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAGAAATACAGTAGACACTGCAGCAGGGGGTGCCTTGGCAGACAAAACCCCTACTGAAGTGAGAGAGCTCATTTCAAGGATGGCAGAAAATTCACAAAACTTTGGGAATAGAGCATCTGAGCTCGACAATTCATTAACCAAGGAAGTAAGTGAACTTAAATCACAAATGCTTAATATGACTACCTTACTAACTTCCTTTGTGCAAGGTGGATCTGTTAAAGTTGCTAAGTGCGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTGCCCTGACTTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATAGCAATACTTACAATGCCGGTTGGAGAGACAACTCAAATCTAAGATGGAAAAACGACAACCCAAGACCCTCGCAAGCGACTTCCTCTTCAAACAATCAAGGTACAAATTTGGAAGATTTAGTTAAAGCTCTTGCTACTAATACCATCTCTTTTCAAAATGAAATGAAGCAACAAATGTCTCATCTGACGAATGCAATAAGCAAATTAGAAGGTAAAGACAAACTTCCGGCTCAACCAGACCATGCTAATGTAAGTGCCATCTCACTTAGAAGCGGTAAAATTCTGGAAACCTCTGCAAGTGAAGAAAAGGTAACTTCTACCCCTATCCTTCTAGAAAATAAAGAAGAGAAAAAGGAAGAAAAATTAGAAACGAATACGCTACCATCTAGTTCTAAAGGTAAATCTCACATTCTTCATTATTCTCCTTATGTCCCTAAAGCTCCTTTTCCTTCTAGGTTAGCTCCTAAAAAAAAAGAATCACACAAGGAGGAAGAACTTTTAGAGATGTTCAGAAAGGTGCAAATAAACCTTCCTCTACTTGATGCAATCCAACAAGTCTCGAGGTATGCTAAGTTTCTCAAAGAACTATGCACCAACAAGAGGAAAATCAAGGAGAAGCCGATGATAAGTCACAATGTTTCTGCCCTTTTAAAGAATTCAATTCCTGAAAAACAAAACGACCCAGGTATGTTTTCTCTTCCTTGTATTATAGGCAATAGGCCAATTTCCCATGCAATGCTTGATCTAGGAGCATCCATATATGTCATGCCATATTCTGTGTATAAAGATCTAGAATTAAACAACTTGAAAAAGACAAGTGTATTCATTCAACTAGCTGATAAATCTTTTATATCGCCGTTAGGAATTGTAGAAGACGTACTTGTTAAAGTAGACAAATTAATCTTTCCTGCGGATTTTTACATAATAGATATGAATGATGCATGCTCTAAGCCTTCCCACTCAATTCTACTAGGAAGACCTTTTCTTAAGACTGCTAAAGCAATAATTGATGTAGACAAAGGTTCCCTAAGCGTAGAATTTGATGGAGATGTAGTGACATTTAATATTTTTGAATCTATGAAATATCCTGAAGAATGTCTATCTTTATGCTCACTAGAATTGCATTATGAATTAGAAGAATTGCCTATTTGTGAAGAATTTTCTAAACAAGAATTTGATGATGAGCTTTGTATGCATGAGTTTGATGATGATAAAAAGATGGTAGAAGTAGAAATGGATGAAAAATTAAATCTTGATGGAAATAATACTGACAATTTTTTCTTCTCCCCAGGAAAAAAGGATTGA

mRNA sequence

ATGGATAGAAATACAGTAGACACTGCAGCAGGGGGTGCCTTGGCAGACAAAACCCCTACTGAAGTGAGAGAGCTCATTTCAAGGATGGCAGAAAATTCACAAAACTTTGGGAATAGAGCATCTGAGCTCGACAATTCATTAACCAAGGAAGTAAGTGAACTTAAATCACAAATGCTTAATATGACTACCTTACTAACTTCCTTTGTGCAAGGTGGATCTGTTAAAGTTGCTAAGTGCGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTGCCCTGACTTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATAGCAATACTTACAATGCCGGTTGGAGAGACAACTCAAATCTAAGATGGAAAAACGACAACCCAAGACCCTCGCAAGCGACTTCCTCTTCAAACAATCAAGGTACAAATTTGGAAGATTTAGTTAAAGCTCTTGCTACTAATACCATCTCTTTTCAAAATGAAATGAAGCAACAAATGTCTCATCTGACGAATGCAATAAGCAAATTAGAAGGTAAAGACAAACTTCCGGCTCAACCAGACCATGCTAATGTAAGTGCCATCTCACTTAGAAGCGGTAAAATTCTGGAAACCTCTGCAAGTGAAGAAAAGGTAACTTCTACCCCTATCCTTCTAGAAAATAAAGAAGAGAAAAAGGAAGAAAAATTAGAAACGAATACGCTACCATCTAGTTCTAAAGAATTGCATTATGAATTAGAAGAATTGCCTATTTGTGAAGAATTTTCTAAACAAGAATTTGATGATGAGCTTTGTATGCATGAGTTTGATGATGATAAAAAGATGGTAGAAGTAGAAATGGATGAAAAATTAAATCTTGATGGAAATAATACTGACAATTTTTTCTTCTCCCCAGGAAAAAAGGATTGA

Coding sequence (CDS)

ATGGATAGAAATACAGTAGACACTGCAGCAGGGGGTGCCTTGGCAGACAAAACCCCTACTGAAGTGAGAGAGCTCATTTCAAGGATGGCAGAAAATTCACAAAACTTTGGGAATAGAGCATCTGAGCTCGACAATTCATTAACCAAGGAAGTAAGTGAACTTAAATCACAAATGCTTAATATGACTACCTTACTAACTTCCTTTGTGCAAGGTGGATCTGTTAAAGTTGCTAAGTGCGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTGCCCTGACTTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATAGCAATACTTACAATGCCGGTTGGAGAGACAACTCAAATCTAAGATGGAAAAACGACAACCCAAGACCCTCGCAAGCGACTTCCTCTTCAAACAATCAAGGTACAAATTTGGAAGATTTAGTTAAAGCTCTTGCTACTAATACCATCTCTTTTCAAAATGAAATGAAGCAACAAATGTCTCATCTGACGAATGCAATAAGCAAATTAGAAGGTAAAGACAAACTTCCGGCTCAACCAGACCATGCTAATGTAAGTGCCATCTCACTTAGAAGCGGTAAAATTCTGGAAACCTCTGCAAGTGAAGAAAAGGTAACTTCTACCCCTATCCTTCTAGAAAATAAAGAAGAGAAAAAGGAAGAAAAATTAGAAACGAATACGCTACCATCTAGTTCTAAAGAATTGCATTATGAATTAGAAGAATTGCCTATTTGTGAAGAATTTTCTAAACAAGAATTTGATGATGAGCTTTGTATGCATGAGTTTGATGATGATAAAAAGATGGTAGAAGTAGAAATGGATGAAAAATTAAATCTTGATGGAAATAATACTGACAATTTTTTCTTCTCCCCAGGAAAAAAGGATTGA

Protein sequence

MDRNTVDTAAGGALADKTPTEVRELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNSNLRWKNDNPRPSQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGKDKLPAQPDHANVSAISLRSGKILETSASEEKVTSTPILLENKEEKKEEKLETNTLPSSSKELHYELEELPICEEFSKQEFDDELCMHEFDDDKKMVEVEMDEKLNLDGNNTDNFFFSPGKKD

Homology

[Close]

BLAST of PI0014533 vs. ExPASy TrEMBL
Match: A0A5D3CB46 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold544G00170 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 1.0e-91
Identity = 176/231 (76.19%), Postives = 206/231 (89.18%), Query Frame = 0


Query: 3   RNTVDTAAGGALADKTPTEVRELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMT 62
           RNT+D AAGGALADKTPTE RELISRMAENS++FGNRASELDNSLTKEVSELKSQMLNMT
Sbjct: 48  RNTLDVAAGGALADKTPTEARELISRMAENSESFGNRASELDNSLTKEVSELKSQMLNMT 107

Query: 63  TLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNSNL 122
           TLLTSFVQG   KV KCGVCGLVGHPNDKCP ++E+ N++R+YDPHSNTYN+GWRDN NL
Sbjct: 108 TLLTSFVQGTPPKVTKCGVCGLVGHPNDKCPKVIEDVNIVRRYDPHSNTYNSGWRDNLNL 167

Query: 123 RWKNDNPRPSQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGKDK 182
           RW NDN + +QA S+S+NQGTNLED++KALATNT+SFQ +MKQQM+ LT AISK++GK K
Sbjct: 168 RWGNDNQKYTQAPSTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTAISKMDGKGK 227

Query: 183 LPAQPDHANVSAISLRSGKILET-SASEEKVTSTPILLENKEEKKEEKLET 233
           LPAQPDHANVSAISLRSGKIL+T +  E+K+TS P+ L +K E KEEK+++
Sbjct: 228 LPAQPDHANVSAISLRSGKILDTPTTKEKKLTSKPLPLNSKNESKEEKVDS 278

[Close]

BLAST of PI0014533 vs. ExPASy TrEMBL
Match: A0A5D3CRR8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00610 PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 1.9e-90
Identity = 186/287 (64.81%), Postives = 223/287 (77.70%), Query Frame = 0


Query: 2   DRNTVDTAAGGALADKTPTEVRELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNM 61
           DRNTVD  AGGALADK PTE RELIS+MAENSQ+F NRASELDNSLTKEVSELKSQMLNM
Sbjct: 83  DRNTVDAVAGGALADKAPTEARELISKMAENSQSFENRASELDNSLTKEVSELKSQMLNM 142

Query: 62  TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNSN 121
           TTLLTSFVQG  +KV KCGVCGLVGHPNDKCP+++E+ N++RKYDPH NTYN+GWRDN N
Sbjct: 143 TTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWRDNPN 202

Query: 122 LRWKNDNPRPSQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGKD 181
           LRW NDN + +QA S+S+NQGTNLED++KALATNT+SFQ EMKQQM+ LT AISK++GK 
Sbjct: 203 LRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKG 262

Query: 182 KLPAQPDHANVSAISLRSGKILET-SASEEKVTSTPILLENKEEKKEEKLETNTLPSSSK 241
           KL AQ ++ANVSA+SLRSGKIL+T +  E+K TS P+ L  K E KEEK+ETN  P +SK
Sbjct: 263 KLSAQSNYANVSAVSLRSGKILDTPTTKEKKATSKPLPLNTKNECKEEKIETNPSPYNSK 322

Query: 242 ELHYELEELPICEEFSKQEFDDELCMHEFDDDKKMVEVEMDEKLNLD 288
              + L +        K  F   L   + +  KK   +EM  K+ ++
Sbjct: 323 NDKFPLND--FTPYIPKPPFPSRLAPKKKETPKKEEILEMFRKVQIN 367

[Close]

BLAST of PI0014533 vs. ExPASy TrEMBL
Match: A0A5A7VQ60 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1704G00030 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 9.4e-90
Identity = 178/239 (74.48%), Postives = 207/239 (86.61%), Query Frame = 0


Query: 4   NTVDTAAGGALADKTPTEVRELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNM-T 63
           NTVD A G ALADKTPTE RELISRMA+N Q+FGNRASE DNSLTKEVSELKSQMLNM T
Sbjct: 150 NTVDAAVGRALADKTPTEARELISRMAKNFQSFGNRASEFDNSLTKEVSELKSQMLNMTT 209

Query: 64  TLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNSNL 123
           TLLTSFVQG  +KV KCGVCGLVGH N+KCP+++E+ N++R+YDPHSNTYN+GWRDN NL
Sbjct: 210 TLLTSFVQGTPLKVTKCGVCGLVGHLNEKCPEVIEDVNIVRRYDPHSNTYNSGWRDNPNL 269

Query: 124 RWKNDNPRPSQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGKDK 183
           RW NDN + +QA S+S+NQGTNLED++KALATNT+SFQ EMKQQM+ LT AISK++GK K
Sbjct: 270 RWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKGK 329

Query: 184 LPAQPDHANVSAISLRSGKILET-SASEEKVTSTPILLENKEEKKEEKLETNTLPSSSK 241
           LPAQ DHANVSAISLRSGKIL+T +  E+KVTS P+ L +K E KEEK+ETN  PS+SK
Sbjct: 330 LPAQLDHANVSAISLRSGKILDTPTTKEKKVTSKPLPLNSKNESKEEKVETNPSPSNSK 388

[Close]

BLAST of PI0014533 vs. ExPASy TrEMBL
Match: A0A5A7SRF5 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00500 PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 6.1e-89
Identity = 175/240 (72.92%), Postives = 205/240 (85.42%), Query Frame = 0


Query: 2   DRNTVDTAAGGALADKTPTEVRELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNM 61
           DRNTVD AAGGALA+K PTE RELISRMA+NSQ FGNRASEL+NSLTKEVSELKSQMLNM
Sbjct: 237 DRNTVDAAAGGALANKIPTEARELISRMAKNSQRFGNRASELENSLTKEVSELKSQMLNM 296

Query: 62  TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNSN 121
           TTLLTSFVQG  +KV KC VCGLVGHPNDKCP+++EE N+++KYDP+SNTYN GWRDN  
Sbjct: 297 TTLLTSFVQGTPLKVTKCRVCGLVGHPNDKCPEVIEELNIVKKYDPYSNTYNTGWRDNPI 356

Query: 122 LRWKNDNPRPSQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGKD 181
           LRW NDN + +QA ++S+NQ TNL+D++KALATNT+SFQ EMKQQM+ LT  ISK++GK 
Sbjct: 357 LRWGNDNQKHTQAPTTSSNQSTNLKDIIKALATNTLSFQQEMKQQMTQLTTTISKMDGKG 416

Query: 182 KLPAQPDHANVSAISLRSGKILET-SASEEKVTSTPILLENKEEKKEEKLETNTLPSSSK 241
           KLPAQP+HANVS ISLRSGKIL+T S  E+KVTS P+ L +K E KEEK+ETN   S+ K
Sbjct: 417 KLPAQPNHANVSVISLRSGKILDTPSTKEKKVTSIPLPLNSKNESKEEKVETNPSLSNPK 476

[Close]

BLAST of PI0014533 vs. ExPASy TrEMBL
Match: E5GBZ4 (Retrotransposon gag protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 7.9e-89
Identity = 175/236 (74.15%), Postives = 202/236 (85.59%), Query Frame = 0


Query: 6   VDTAAGGALADKTPTEVRELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLL 65
           VD AAGGALADKTPTE  ELI RM ENSQNFGNRA ELDN LTKEVSELKSQMLNMTTLL
Sbjct: 2   VDAAAGGALADKTPTEALELILRMTENSQNFGNRALELDNFLTKEVSELKSQMLNMTTLL 61

Query: 66  TSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNSNLRWK 125
           TSFVQG  +KV KCGVC LVGHPNDKCP+++E+ N++RKYDP+ NTYN+GWRDN NLRW 
Sbjct: 62  TSFVQGTPLKVTKCGVCRLVGHPNDKCPEVIEDVNIVRKYDPYGNTYNSGWRDNPNLRWG 121

Query: 126 NDNPRPSQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGKDKLPA 185
           NDN + +QA  +S+NQGTNLED++KALATNT+SFQ EMKQQM+ LT AISK++GK KLPA
Sbjct: 122 NDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKGKLPA 181

Query: 186 QPDHANVSAISLRSGKILET-SASEEKVTSTPILLENKEEKKEEKLETNTLPSSSK 241
           QPD+ANVSAISLRSGKIL+T +  E+KVTS  + L +K E KEEK+ETN  PS+SK
Sbjct: 182 QPDYANVSAISLRSGKILDTPTTKEKKVTSKLLPLNSKNESKEEKVETNLSPSNSK 237

[Close]

BLAST of PI0014533 vs. NCBI nr
Match: TYK07549.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 346.7 bits (888), Expect = 2.1e-91
Identity = 176/231 (76.19%), Postives = 206/231 (89.18%), Query Frame = 0


Query: 3   RNTVDTAAGGALADKTPTEVRELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMT 62
           RNT+D AAGGALADKTPTE RELISRMAENS++FGNRASELDNSLTKEVSELKSQMLNMT
Sbjct: 48  RNTLDVAAGGALADKTPTEARELISRMAENSESFGNRASELDNSLTKEVSELKSQMLNMT 107

Query: 63  TLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNSNL 122
           TLLTSFVQG   KV KCGVCGLVGHPNDKCP ++E+ N++R+YDPHSNTYN+GWRDN NL
Sbjct: 108 TLLTSFVQGTPPKVTKCGVCGLVGHPNDKCPKVIEDVNIVRRYDPHSNTYNSGWRDNLNL 167

Query: 123 RWKNDNPRPSQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGKDK 182
           RW NDN + +QA S+S+NQGTNLED++KALATNT+SFQ +MKQQM+ LT AISK++GK K
Sbjct: 168 RWGNDNQKYTQAPSTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTAISKMDGKGK 227

Query: 183 LPAQPDHANVSAISLRSGKILET-SASEEKVTSTPILLENKEEKKEEKLET 233
           LPAQPDHANVSAISLRSGKIL+T +  E+K+TS P+ L +K E KEEK+++
Sbjct: 228 LPAQPDHANVSAISLRSGKILDTPTTKEKKLTSKPLPLNSKNESKEEKVDS 278

[Close]

BLAST of PI0014533 vs. NCBI nr
Match: KAA0047407.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 342.4 bits (877), Expect = 3.9e-90
Identity = 186/287 (64.81%), Postives = 223/287 (77.70%), Query Frame = 0


Query: 2   DRNTVDTAAGGALADKTPTEVRELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNM 61
           DRNTVD  AGGALADK PTE RELIS+MAENSQ+F NRASELDNSLTKEVSELKSQMLNM
Sbjct: 83  DRNTVDAVAGGALADKAPTEARELISKMAENSQSFENRASELDNSLTKEVSELKSQMLNM 142

Query: 62  TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNSN 121
           TTLLTSFVQG  +KV KCGVCGLVGHPNDKCP+++E+ N++RKYDPH NTYN+GWRDN N
Sbjct: 143 TTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWRDNPN 202

Query: 122 LRWKNDNPRPSQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGKD 181
           LRW NDN + +QA S+S+NQGTNLED++KALATNT+SFQ EMKQQM+ LT AISK++GK 
Sbjct: 203 LRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKG 262

Query: 182 KLPAQPDHANVSAISLRSGKILET-SASEEKVTSTPILLENKEEKKEEKLETNTLPSSSK 241
           KL AQ ++ANVSA+SLRSGKIL+T +  E+K TS P+ L  K E KEEK+ETN  P +SK
Sbjct: 263 KLSAQSNYANVSAVSLRSGKILDTPTTKEKKATSKPLPLNTKNECKEEKIETNPSPYNSK 322

Query: 242 ELHYELEELPICEEFSKQEFDDELCMHEFDDDKKMVEVEMDEKLNLD 288
              + L +        K  F   L   + +  KK   +EM  K+ ++
Sbjct: 323 NDKFPLND--FTPYIPKPPFPSRLAPKKKETPKKEEILEMFRKVQIN 367

[Close]

BLAST of PI0014533 vs. NCBI nr
Match: KAA0067359.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK30663.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 340.1 bits (871), Expect = 1.9e-89
Identity = 178/239 (74.48%), Postives = 207/239 (86.61%), Query Frame = 0


Query: 4   NTVDTAAGGALADKTPTEVRELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNM-T 63
           NTVD A G ALADKTPTE RELISRMA+N Q+FGNRASE DNSLTKEVSELKSQMLNM T
Sbjct: 150 NTVDAAVGRALADKTPTEARELISRMAKNFQSFGNRASEFDNSLTKEVSELKSQMLNMTT 209

Query: 64  TLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNSNL 123
           TLLTSFVQG  +KV KCGVCGLVGH N+KCP+++E+ N++R+YDPHSNTYN+GWRDN NL
Sbjct: 210 TLLTSFVQGTPLKVTKCGVCGLVGHLNEKCPEVIEDVNIVRRYDPHSNTYNSGWRDNPNL 269

Query: 124 RWKNDNPRPSQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGKDK 183
           RW NDN + +QA S+S+NQGTNLED++KALATNT+SFQ EMKQQM+ LT AISK++GK K
Sbjct: 270 RWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKGK 329

Query: 184 LPAQPDHANVSAISLRSGKILET-SASEEKVTSTPILLENKEEKKEEKLETNTLPSSSK 241
           LPAQ DHANVSAISLRSGKIL+T +  E+KVTS P+ L +K E KEEK+ETN  PS+SK
Sbjct: 330 LPAQLDHANVSAISLRSGKILDTPTTKEKKVTSKPLPLNSKNESKEEKVETNPSPSNSK 388

[Close]

BLAST of PI0014533 vs. NCBI nr
Match: KAA0031967.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK16787.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 337.4 bits (864), Expect = 1.3e-88
Identity = 175/240 (72.92%), Postives = 205/240 (85.42%), Query Frame = 0


Query: 2   DRNTVDTAAGGALADKTPTEVRELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNM 61
           DRNTVD AAGGALA+K PTE RELISRMA+NSQ FGNRASEL+NSLTKEVSELKSQMLNM
Sbjct: 237 DRNTVDAAAGGALANKIPTEARELISRMAKNSQRFGNRASELENSLTKEVSELKSQMLNM 296

Query: 62  TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNSN 121
           TTLLTSFVQG  +KV KC VCGLVGHPNDKCP+++EE N+++KYDP+SNTYN GWRDN  
Sbjct: 297 TTLLTSFVQGTPLKVTKCRVCGLVGHPNDKCPEVIEELNIVKKYDPYSNTYNTGWRDNPI 356

Query: 122 LRWKNDNPRPSQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGKD 181
           LRW NDN + +QA ++S+NQ TNL+D++KALATNT+SFQ EMKQQM+ LT  ISK++GK 
Sbjct: 357 LRWGNDNQKHTQAPTTSSNQSTNLKDIIKALATNTLSFQQEMKQQMTQLTTTISKMDGKG 416

Query: 182 KLPAQPDHANVSAISLRSGKILET-SASEEKVTSTPILLENKEEKKEEKLETNTLPSSSK 241
           KLPAQP+HANVS ISLRSGKIL+T S  E+KVTS P+ L +K E KEEK+ETN   S+ K
Sbjct: 417 KLPAQPNHANVSVISLRSGKILDTPSTKEKKVTSIPLPLNSKNESKEEKVETNPSLSNPK 476

[Close]

BLAST of PI0014533 vs. NCBI nr
Match: ADN33993.1 (retrotransposon gag protein [Cucumis melo subsp. melo])

HSP 1 Score: 337.0 bits (863), Expect = 1.6e-88
Identity = 175/236 (74.15%), Postives = 202/236 (85.59%), Query Frame = 0


Query: 6   VDTAAGGALADKTPTEVRELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLL 65
           VD AAGGALADKTPTE  ELI RM ENSQNFGNRA ELDN LTKEVSELKSQMLNMTTLL
Sbjct: 2   VDAAAGGALADKTPTEALELILRMTENSQNFGNRALELDNFLTKEVSELKSQMLNMTTLL 61

Query: 66  TSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNSNLRWK 125
           TSFVQG  +KV KCGVC LVGHPNDKCP+++E+ N++RKYDP+ NTYN+GWRDN NLRW 
Sbjct: 62  TSFVQGTPLKVTKCGVCRLVGHPNDKCPEVIEDVNIVRKYDPYGNTYNSGWRDNPNLRWG 121

Query: 126 NDNPRPSQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGKDKLPA 185
           NDN + +QA  +S+NQGTNLED++KALATNT+SFQ EMKQQM+ LT AISK++GK KLPA
Sbjct: 122 NDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKGKLPA 181

Query: 186 QPDHANVSAISLRSGKILET-SASEEKVTSTPILLENKEEKKEEKLETNTLPSSSK 241
           QPD+ANVSAISLRSGKIL+T +  E+KVTS  + L +K E KEEK+ETN  PS+SK
Sbjct: 182 QPDYANVSAISLRSGKILDTPTTKEKKVTSKLLPLNSKNESKEEKVETNLSPSNSK 237

The following BLAST results are available for this feature:

BLAST of PI0014533 vs.


Match Name	E-value	Identity	Description

BLAST of PI0014533 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CB46	1.0e-91	76.19	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3CRR8	1.9e-90	64.81	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7VQ60	9.4e-90	74.48	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7SRF5	6.1e-89	72.92	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
E5GBZ4	7.9e-89	74.15	Retrotransposon gag protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

BLAST of PI0014533 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK07549.1	2.1e-91	76.19	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0047407.1	3.9e-90	64.81	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotranspos...	[more]
KAA0067359.1	1.9e-89	74.48	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK30663.1 retrotranspos...	[more]
KAA0031967.1	1.3e-88	72.92	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK16787.1 retrotranspos...	[more]
ADN33993.1	1.6e-88	74.15	retrotransposon gag protein [Cucumis melo subsp. melo]	[more]

BLAST of PI0014533 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 160..180
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..143
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..143
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 1..134
None	No IPR available	PANTHER	PTHR24559:SF334	SUBFAMILY NOT NAMED	coord: 1..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0014533.1	PI0014533.1	mRNA