PI0014481 (gene) Melon (PI 482460) v1

Overview


Name	PI0014481
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	PMD domain-containing protein
Location	chr07: 20818418 .. 20819339 (+)
RNA-Seq Expression	PI0014481
Synteny	PI0014481

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTACTTCACCGAATGCTTCTTATCTGGAAATAAGCACCTTACAATCCTTACTGACAAGAATCAACCAAGAGACGATGGTTTCAGTCTCCTTGTAGAGAAGTCGTTGACGGGTTCTTTTGCAGATTTTTGGCCAAACTTAGACAACAACTCGATTCTTCCCAAGCTATCTGTGGAGATACCTTTGTCTCAGGGAAAAAATGCATGGGTCCTGCAATCTTCTATCCATGATGAAGCTCCTAATGCCAATCGAGTCCTCACTCTCGGACATCGTATAATTGAAGGCCAAACCCGTTGGGGTGCCGTGACTAAAGTCCCAGGAGAATTCTGCTTTACTGACTGTTATTGGGAGTGGCTAGAGTTTGTAGTTGGTCGAAGTGGGGAAATTCTCTACGATGCTCGTTTATTCGGTGCCGTAACAGCTTCTTTGTACACATATGATCGTAACATCGATGTGGTTCGAGCGTTTTGTGAAGCTTGGTGTCCTTCAACTAATACTCTCCATACCATGGCGGGCGAGGTGTCCATTTCCTTATGGGACATGTGGTCATTTGGGGGTCTTCCAATAAGAGGGAATTTCTATGAGGAAGGCATCCCTTCCTTTAAAGAATTGGTCTCGCCGCACGATAAGGCTAAATGTCTCCCGACAACATGTCAATATCTGTTTCAGGCGTATCATTCAATAATTGGCATGCAGAGAAATGACCGCACGACACTGTCCAAGAATGACTCTCAAGTCACTATTGGGTCTTGGATTTCATTTTGGTATCTTGGGCCTAGAAGCTATGATAAGCCAACTACAAGGAAGCAAAAGAAGGTGTCACGTTCCAAATCTACCAAAAATCCAGATGGTTCGAAGATCTCTAAGCCTCGGGAATGGTCTACCAGAGAAAACATGTTCTTCGGAGAACTTGGGATAA

mRNA sequence

ATGGTTTACTTCACCGAATGCTTCTTATCTGGAAATAAGCACCTTACAATCCTTACTGACAAGAATCAACCAAGAGACGATGGTTTCAGTCTCCTTGTAGAGAAGTCGTTGACGGGTTCTTTTGCAGATTTTTGGCCAAACTTAGACAACAACTCGATTCTTCCCAAGCTATCTGTGGAGATACCTTTGTCTCAGGGAAAAAATGCATGGGTCCTGCAATCTTCTATCCATGATGAAGCTCCTAATGCCAATCGAGTCCTCACTCTCGGACATCGTATAATTGAAGGCCAAACCCGTTGGGAAGCTATGATAAGCCAACTACAAGGAAGCAAAAGAAGGTGTCACGTTCCAAATCTACCAAAAATCCAGATGGTTCGAAGATCTCTAAGCCTCGGGAATGGTCTACCAGAGAAAACATGTTCTTCGGAGAACTTGGGATAA

Coding sequence (CDS)

ATGGTTTACTTCACCGAATGCTTCTTATCTGGAAATAAGCACCTTACAATCCTTACTGACAAGAATCAACCAAGAGACGATGGTTTCAGTCTCCTTGTAGAGAAGTCGTTGACGGGTTCTTTTGCAGATTTTTGGCCAAACTTAGACAACAACTCGATTCTTCCCAAGCTATCTGTGGAGATACCTTTGTCTCAGGGAAAAAATGCATGGGTCCTGCAATCTTCTATCCATGATGAAGCTCCTAATGCCAATCGAGTCCTCACTCTCGGACATCGTATAATTGAAGGCCAAACCCGTTGGGAAGCTATGATAAGCCAACTACAAGGAAGCAAAAGAAGGTGTCACGTTCCAAATCTACCAAAAATCCAGATGGTTCGAAGATCTCTAAGCCTCGGGAATGGTCTACCAGAGAAAACATGTTCTTCGGAGAACTTGGGATAA

Protein sequence

MVYFTECFLSGNKHLTILTDKNQPRDDGFSLLVEKSLTGSFADFWPNLDNNSILPKLSVEIPLSQGKNAWVLQSSIHDEAPNANRVLTLGHRIIEGQTRWEAMISQLQGSKRRCHVPNLPKIQMVRRSLSLGNGLPEKTCSSENLG

Homology

[Close]

BLAST of PI0014481 vs. ExPASy TrEMBL
Match: A0A5A7TZN9 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G001160 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 6.2e-39
Identity = 77/103 (74.76%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 1   MVYFTECFLSGNKHLTILTDKNQPRDDGFSLLVEKSLTGSFADFWPNLDNNSILPKLSVE 60
           MVYFTE FLSG +HL IL+D+NQPR+DG SL+VEKS  G+FAD WP+LDNNS+LP+LSVE
Sbjct: 17  MVYFTERFLSGVRHLIILSDRNQPREDGLSLIVEKSWAGAFADHWPHLDNNSVLPRLSVE 76

Query: 61  IPLSQGKNAWVLQSSIHDEAPNANRVLTLGHRIIEGQTRWEAM 104
           IPLS+GK+AWVLQSSIH+EAPN+ R LTLG R+IEGQTRW  M
Sbjct: 77  IPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTM 119

[Close]

BLAST of PI0014481 vs. ExPASy TrEMBL
Match: A0A5D3C267 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001330 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 6.2e-39
Identity = 77/103 (74.76%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 1   MVYFTECFLSGNKHLTILTDKNQPRDDGFSLLVEKSLTGSFADFWPNLDNNSILPKLSVE 60
           MVYFTE FLSG +HL IL+D+NQPR+DG SL+VEKS  G+FAD WP+LDNNS+LP+LSVE
Sbjct: 17  MVYFTERFLSGVRHLIILSDRNQPREDGLSLIVEKSWAGAFADHWPHLDNNSVLPRLSVE 76

Query: 61  IPLSQGKNAWVLQSSIHDEAPNANRVLTLGHRIIEGQTRWEAM 104
           IPLS+GK+AWVLQSSIH+EAPN+ R LTLG R+IEGQTRW  M
Sbjct: 77  IPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTM 119

[Close]

BLAST of PI0014481 vs. ExPASy TrEMBL
Match: A0A5A7U8L3 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G001600 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 6.9e-38
Identity = 74/103 (71.84%), Postives = 89/103 (86.41%), Query Frame = 0


Query: 1   MVYFTECFLSGNKHLTILTDKNQPRDDGFSLLVEKSLTGSFADFWPNLDNNSILPKLSVE 60
           MVYFTE FLSG +HL IL+D+NQPR+DG SL++EK   G+FAD WP LDNNS+LP+LSVE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIMEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 61  IPLSQGKNAWVLQSSIHDEAPNANRVLTLGHRIIEGQTRWEAM 104
           IPLS+GK+AW+LQSSIH+EAPN+ R LTLG R+IEGQTRW  M
Sbjct: 61  IPLSEGKSAWILQSSIHNEAPNSGRALTLGQRLIEGQTRWGTM 103

[Close]

BLAST of PI0014481 vs. ExPASy TrEMBL
Match: A0A5A7TX42 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00950 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 9.0e-38
Identity = 74/100 (74.00%), Postives = 88/100 (88.00%), Query Frame = 0


Query: 1   MVYFTECFLSGNKHLTILTDKNQPRDDGFSLLVEKSLTGSFADFWPNLDNNSILPKLSVE 60
           MVYFTE FLSG +HL IL+D+NQPR+DG SL+VEK   G+FAD WP LDNNS+LP+LSVE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 61  IPLSQGKNAWVLQSSIHDEAPNANRVLTLGHRIIEGQTRW 101
           +PLS+GK+AWVLQSSIH+EAPN+ R LTLG R+IEGQTRW
Sbjct: 61  VPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRW 100

[Close]

BLAST of PI0014481 vs. ExPASy TrEMBL
Match: A0A5A7UET3 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold135G001110 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 9.0e-38
Identity = 74/100 (74.00%), Postives = 88/100 (88.00%), Query Frame = 0


Query: 1   MVYFTECFLSGNKHLTILTDKNQPRDDGFSLLVEKSLTGSFADFWPNLDNNSILPKLSVE 60
           MVYFTE FLSG +HL IL+D+NQPR+DG SL+VEK   G+FAD WP LDNNS+LP+LSVE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 61  IPLSQGKNAWVLQSSIHDEAPNANRVLTLGHRIIEGQTRW 101
           IPLS+GK+AW+LQSSIH+EAPN+ R LTLG R+IEGQTRW
Sbjct: 61  IPLSEGKSAWILQSSIHNEAPNSGRALTLGQRLIEGQTRW 100

[Close]

BLAST of PI0014481 vs. NCBI nr
Match: TYK04516.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 170.2 bits (430), Expect = 1.3e-38
Identity = 77/103 (74.76%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 1   MVYFTECFLSGNKHLTILTDKNQPRDDGFSLLVEKSLTGSFADFWPNLDNNSILPKLSVE 60
           MVYFTE FLSG +HL IL+D+NQPR+DG SL+VEKS  G+FAD WP+LDNNS+LP+LSVE
Sbjct: 17  MVYFTERFLSGVRHLIILSDRNQPREDGLSLIVEKSWAGAFADHWPHLDNNSVLPRLSVE 76

Query: 61  IPLSQGKNAWVLQSSIHDEAPNANRVLTLGHRIIEGQTRWEAM 104
           IPLS+GK+AWVLQSSIH+EAPN+ R LTLG R+IEGQTRW  M
Sbjct: 77  IPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTM 119

[Close]

BLAST of PI0014481 vs. NCBI nr
Match: KAA0046821.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 170.2 bits (430), Expect = 1.3e-38
Identity = 77/103 (74.76%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 1   MVYFTECFLSGNKHLTILTDKNQPRDDGFSLLVEKSLTGSFADFWPNLDNNSILPKLSVE 60
           MVYFTE FLSG +HL IL+D+NQPR+DG SL+VEKS  G+FAD WP+LDNNS+LP+LSVE
Sbjct: 17  MVYFTERFLSGVRHLIILSDRNQPREDGLSLIVEKSWAGAFADHWPHLDNNSVLPRLSVE 76

Query: 61  IPLSQGKNAWVLQSSIHDEAPNANRVLTLGHRIIEGQTRWEAM 104
           IPLS+GK+AWVLQSSIH+EAPN+ R LTLG R+IEGQTRW  M
Sbjct: 77  IPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTM 119

[Close]

BLAST of PI0014481 vs. NCBI nr
Match: KAA0050516.1 (hypothetical protein E6C27_scaffold175G001600 [Cucumis melo var. makuwa])

HSP 1 Score: 166.8 bits (421), Expect = 1.4e-37
Identity = 74/103 (71.84%), Postives = 89/103 (86.41%), Query Frame = 0


Query: 1   MVYFTECFLSGNKHLTILTDKNQPRDDGFSLLVEKSLTGSFADFWPNLDNNSILPKLSVE 60
           MVYFTE FLSG +HL IL+D+NQPR+DG SL++EK   G+FAD WP LDNNS+LP+LSVE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIMEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 61  IPLSQGKNAWVLQSSIHDEAPNANRVLTLGHRIIEGQTRWEAM 104
           IPLS+GK+AW+LQSSIH+EAPN+ R LTLG R+IEGQTRW  M
Sbjct: 61  IPLSEGKSAWILQSSIHNEAPNSGRALTLGQRLIEGQTRWGTM 103

[Close]

BLAST of PI0014481 vs. NCBI nr
Match: KAA0047478.1 (hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa])

HSP 1 Score: 166.4 bits (420), Expect = 1.8e-37
Identity = 74/100 (74.00%), Postives = 88/100 (88.00%), Query Frame = 0


Query: 1   MVYFTECFLSGNKHLTILTDKNQPRDDGFSLLVEKSLTGSFADFWPNLDNNSILPKLSVE 60
           MVYFTE FLSG +HL IL+D+NQPR+DG SL+VEK   G+FAD WP LDNNS+LP+LSVE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 61  IPLSQGKNAWVLQSSIHDEAPNANRVLTLGHRIIEGQTRW 101
           +PLS+GK+AWVLQSSIH+EAPN+ R LTLG R+IEGQTRW
Sbjct: 61  VPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRW 100

[Close]

BLAST of PI0014481 vs. NCBI nr
Match: KAA0053734.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 166.4 bits (420), Expect = 1.8e-37
Identity = 74/100 (74.00%), Postives = 88/100 (88.00%), Query Frame = 0


Query: 1   MVYFTECFLSGNKHLTILTDKNQPRDDGFSLLVEKSLTGSFADFWPNLDNNSILPKLSVE 60
           MVYFTE FLSG +HL IL+D+NQPR+DG SL+VEK   G+FAD WP LDNNS+LP+LSVE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 61  IPLSQGKNAWVLQSSIHDEAPNANRVLTLGHRIIEGQTRW 101
           IPLS+GK+AW+LQSSIH+EAPN+ R LTLG R+IEGQTRW
Sbjct: 61  IPLSEGKSAWILQSSIHNEAPNSGRALTLGQRLIEGQTRW 100

The following BLAST results are available for this feature:

BLAST of PI0014481 vs.


Match Name	E-value	Identity	Description

BLAST of PI0014481 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZN9	6.2e-39	74.76	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5D3C267	6.2e-39	74.76	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7U8L3	6.9e-38	71.84	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7TX42	9.0e-38	74.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UET3	9.0e-38	74.00	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]

BLAST of PI0014481 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK04516.1	1.3e-38	74.76	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0046821.1	1.3e-38	74.76	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0050516.1	1.4e-37	71.84	hypothetical protein E6C27_scaffold175G001600 [Cucumis melo var. makuwa]	[more]
KAA0047478.1	1.8e-37	74.00	hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa]	[more]
KAA0053734.1	1.8e-37	74.00	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0014481 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0014481.1	PI0014481.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane