PI0014349 (gene) Melon (PI 482460) v1

Overview


Name	PI0014349
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	50S ribosomal protein L23, chloroplastic
Location	chr05: 18950765 .. 18951046 (+)
RNA-Seq Expression	PI0014349
Synteny	PI0014349

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAAATCAATATACTTCTAATGTCGAATCAAGATCAACTAGGACAAAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGATAATAGCTATGAATAGTCATCGGCTCCCGAGAAAGGGTAGAAGAATGAGACCTATTATGGGACATACAATGCATTACAGACGTATGGTCATTACGCTTCAATCGGGTTATTCTACTCGACCTCTTAGAAAGAAAAGAACTTAA

mRNA sequence

ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAAATCAATATACTTCTAATGTCGAATCAAGATCAACTAGGACAAAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGATAATAGCTATGAATAGTCATCGGCTCCCGAGAAAGGGTAGAAGAATGAGACCTATTATGGGACATACAATGCATTACAGACGTATGGTCATTACGCTTCAATCGGGTTATTCTACTCGACCTCTTAGAAAGAAAAGAACTTAA

Coding sequence (CDS)

ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAAATCAATATACTTCTAATGTCGAATCAAGATCAACTAGGACAAAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGATAATAGCTATGAATAGTCATCGGCTCCCGAGAAAGGGTAGAAGAATGAGACCTATTATGGGACATACAATGCATTACAGACGTATGGTCATTACGCTTCAATCGGGTTATTCTACTCGACCTCTTAGAAAGAAAAGAACTTAA

Protein sequence

MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGRRMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT

Homology

[Close]

BLAST of PI0014349 vs. ExPASy Swiss-Prot
Match: Q4VZK6 (50S ribosomal protein L23, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 2.2e-42
Identity = 84/93 (90.32%), Postives = 87/93 (93.55%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGR 60
          MDGIKYAVFTDKSIRLLGKNQYTSNVES STRT+IKHWVELFFGVK+IAMNSHRLP KGR
Sbjct: 1  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 RMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT 94
          RM PIMGHTMHYRRM+ITLQ GYS  PLRKKRT
Sbjct: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93

[Close]

BLAST of PI0014349 vs. ExPASy Swiss-Prot
Match: Q0ZIV5 (50S ribosomal protein L23, chloroplastic OS=Vitis vinifera OX=29760 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 2.2e-42
Identity = 84/93 (90.32%), Postives = 87/93 (93.55%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGR 60
          MDGIKYAVFTDKSIRLLGKNQYTSNVES STRT+IKHWVELFFGVK+IAMNSHRLP KGR
Sbjct: 1  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 RMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT 94
          RM PIMGHTMHYRRM+ITLQ GYS  PLRKKRT
Sbjct: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93

[Close]

BLAST of PI0014349 vs. ExPASy Swiss-Prot
Match: Q09MB3 (50S ribosomal protein L23, chloroplastic OS=Citrus sinensis OX=2711 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.8e-42
Identity = 83/93 (89.25%), Postives = 87/93 (93.55%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGR 60
          MDGIKYAVFTDKSIRLLGKNQYTSNVES STRT+IKHWVELFFGVK+IAMNSH+LPRKGR
Sbjct: 1  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHQLPRKGR 60

Query: 61 RMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT 94
          RM PIM HTMHYRRM+ITLQ GYS  PLRKKRT
Sbjct: 61 RMGPIMAHTMHYRRMIITLQPGYSIPPLRKKRT 93

[Close]

BLAST of PI0014349 vs. ExPASy Swiss-Prot
Match: Q06R67 (50S ribosomal protein L23, chloroplastic OS=Jasminum nudiflorum OX=126431 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 6.3e-42
Identity = 83/93 (89.25%), Postives = 87/93 (93.55%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGR 60
          MDGIKYAVFT+KSIRLLGKNQYTSNVES STRT+IKHWVELFFGVK+IAMNSHRLP KGR
Sbjct: 1  MDGIKYAVFTEKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 RMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT 94
          RM PIMGHTMHYRRM+ITLQ GYS  PLRKKRT
Sbjct: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93

[Close]

BLAST of PI0014349 vs. ExPASy Swiss-Prot
Match: Q0PUX7 (50S ribosomal protein L23, chloroplastic OS=Fragaria ananassa OX=3747 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 8.2e-42
Identity = 83/93 (89.25%), Postives = 86/93 (92.47%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGR 60
          MDGIKYAVFTDKSIRLLGKNQYTSNVES STRT+IKHWVELFFGVK+IAMNSHRLP KGR
Sbjct: 1  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 RMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT 94
          RM P MGHTMHYRRM+ITLQ GYS  PLRKKRT
Sbjct: 61 RMGPTMGHTMHYRRMIITLQPGYSIPPLRKKRT 93

[Close]

BLAST of PI0014349 vs. ExPASy TrEMBL
Match: A0A482EVN3 (50S ribosomal protein L23, chloroplastic OS=Azara serrata OX=77060 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 3.2e-41
Identity = 86/93 (92.47%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGR 60
          MDGIKYAVFTDKSIRLLGKNQYTSNVES STRT+IKHWVELFFGVK+IAMNSHRLP KGR
Sbjct: 1  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 RMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT 94
          RMRPIMGHTMHYRRM+ITLQSGYS  PLRKKRT
Sbjct: 61 RMRPIMGHTMHYRRMIITLQSGYSIPPLRKKRT 93

[Close]

BLAST of PI0014349 vs. ExPASy TrEMBL
Match: G0YDX1 (50S ribosomal protein L23, chloroplastic OS=Erythrospermum phytolaccoides OX=124844 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 3.2e-41
Identity = 86/93 (92.47%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGR 60
          MDGIKYAVFTDKSIRLLGKNQYTSNVES STRT+IKHWVELFFGVK+IAMNSHRLP KGR
Sbjct: 1  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 RMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT 94
          RMRPIMGHTMHYRRM+ITLQSGYS  PLRKKRT
Sbjct: 61 RMRPIMGHTMHYRRMIITLQSGYSIPPLRKKRT 93

[Close]

BLAST of PI0014349 vs. ExPASy TrEMBL
Match: A0A411K440 (Ribosomal protein L23 OS=Halophytum ameghinoi OX=124817 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 9.4e-41
Identity = 85/93 (91.40%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGR 60
          MDGIKYAVFTDKSIRLLGKNQYTSNVES STR +IKHWVELFFGVK+IAMNSHRLPRKGR
Sbjct: 1  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRAEIKHWVELFFGVKVIAMNSHRLPRKGR 60

Query: 61 RMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT 94
          RM PIMGHTMHYRRM+ITLQSGYS  PLRKKRT
Sbjct: 61 RMGPIMGHTMHYRRMIITLQSGYSISPLRKKRT 93

[Close]

BLAST of PI0014349 vs. ExPASy TrEMBL
Match: A0A6C0SM69 (50S ribosomal protein L23, chloroplastic OS=Flacourtia rukam OX=1085434 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.2e-40
Identity = 85/93 (91.40%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGR 60
          MDGIKYAVFTDKSIRLLGKNQYTSNVES STRT+IKHWVELFFGVK+IAMNSHRLP KGR
Sbjct: 1  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 RMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT 94
          RMRPIMGHTMHYRRM+ITLQ GYS  PLRKKRT
Sbjct: 61 RMRPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93

[Close]

BLAST of PI0014349 vs. ExPASy TrEMBL
Match: A0A650FC08 (50S ribosomal protein L23, chloroplastic OS=Dovyalis caffra OX=77055 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.2e-40
Identity = 85/93 (91.40%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGR 60
          MDGIKYAVFTDKSIRLLGKNQYTSNVES STRT+IKHWVELFFGVK+IAMNSHRLP KGR
Sbjct: 1  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 RMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT 94
          RMRPIMGHTMHYRRM+ITLQ GYS  PLRKKRT
Sbjct: 61 RMRPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93

[Close]

BLAST of PI0014349 vs. NCBI nr
Match: YP_009573518.1 (ribosomal protein L23 [Azara serrata] >YP_009573538.1 ribosomal protein L23 [Azara serrata] >AEK71798.1 ribosomal protein L23 [Erythrospermum phytolaccoides] >QBM92246.1 ribosomal protein L23 [Azara serrata] >QBM92266.1 ribosomal protein L23 [Azara serrata])

HSP 1 Score: 177.2 bits (448), Expect = 6.7e-41
Identity = 86/93 (92.47%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGR 60
          MDGIKYAVFTDKSIRLLGKNQYTSNVES STRT+IKHWVELFFGVK+IAMNSHRLP KGR
Sbjct: 1  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 RMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT 94
          RMRPIMGHTMHYRRM+ITLQSGYS  PLRKKRT
Sbjct: 61 RMRPIMGHTMHYRRMIITLQSGYSIPPLRKKRT 93

[Close]

BLAST of PI0014349 vs. NCBI nr
Match: YP_009557356.1 (ribosomal protein L23 [Halophytum ameghinoi] >QBC72085.1 ribosomal protein L23 [Halophytum ameghinoi])

HSP 1 Score: 175.6 bits (444), Expect = 1.9e-40
Identity = 85/93 (91.40%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGR 60
          MDGIKYAVFTDKSIRLLGKNQYTSNVES STR +IKHWVELFFGVK+IAMNSHRLPRKGR
Sbjct: 1  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRAEIKHWVELFFGVKVIAMNSHRLPRKGR 60

Query: 61 RMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT 94
          RM PIMGHTMHYRRM+ITLQSGYS  PLRKKRT
Sbjct: 61 RMGPIMGHTMHYRRMIITLQSGYSISPLRKKRT 93

[Close]

BLAST of PI0014349 vs. NCBI nr
Match: YP_009767871.1 (ribosomal protein L23 [Dermatophyllum secundiflorum] >YP_009767890.1 ribosomal protein L23 [Dermatophyllum secundiflorum] >QIS98489.1 ribosomal protein L23 [Dermatophyllum secundiflorum] >QIS98508.1 ribosomal protein L23 [Dermatophyllum secundiflorum])

HSP 1 Score: 175.3 bits (443), Expect = 2.5e-40
Identity = 85/93 (91.40%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGR 60
          M+GIKYAVFTDKSIRLLGKNQYTSNVES STRT+IKHWVELFFGVK+IAMNSHRLP KGR
Sbjct: 1  MNGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 RMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT 94
          RMRPIMGHTMHYRRM+ITLQSGYS  PLRKKRT
Sbjct: 61 RMRPIMGHTMHYRRMIITLQSGYSIPPLRKKRT 93

[Close]

BLAST of PI0014349 vs. NCBI nr
Match: YP_009570400.1 (ribosomal protein L23 [Anredera cordifolia] >YP_009570419.1 ribosomal protein L23 [Anredera cordifolia] >YP_009571219.1 ribosomal protein L23 [Basella alba] >YP_009571238.1 ribosomal protein L23 [Basella alba] >YP_009571389.1 ribosomal protein L23 [Cistanthe grandiflora] >YP_009571408.1 ribosomal protein L23 [Cistanthe grandiflora] >YP_010139660.1 ribosomal protein L23 [Gynura cusimbua] >YP_010139679.1 ribosomal protein L23 [Gynura cusimbua] >AFB77009.1 50S ribosomal protein L23, partial [Anredera baselloides] >AFB77014.1 50S ribosomal protein L23, partial [Portulacaria afra] >QBC70318.1 ribosomal protein L23 [Talinum paniculatum] >QBC72478.1 ribosomal protein L23 [Phemeranthus sp. GY-2019] >QBC72723.1 ribosomal protein L23 [Talinella dauphinensis] >QBC72807.1 ribosomal protein L23 [Talinum caffrum])

HSP 1 Score: 175.3 bits (443), Expect = 2.5e-40
Identity = 85/93 (91.40%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGR 60
          MDGIKYAVFTDKSIRLLGKNQYTSNVES STR +IKHWVELFFGVK+IAMNSHRLPRKGR
Sbjct: 1  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRAEIKHWVELFFGVKVIAMNSHRLPRKGR 60

Query: 61 RMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT 94
          RM PIMGHTMHYRRM+ITLQSGYS  PLRKKRT
Sbjct: 61 RMGPIMGHTMHYRRMIITLQSGYSIPPLRKKRT 93

[Close]

BLAST of PI0014349 vs. NCBI nr
Match: YP_009473928.1 (ribosomal protein L23 [Flacourtia indica] >YP_009473949.1 ribosomal protein L23 [Flacourtia indica] >YP_009584589.1 ribosomal protein L23 [Viola mirabilis] >YP_009584607.1 ribosomal protein L23 [Viola mirabilis] >YP_009584671.1 ribosomal protein L23 [Viola phalacrocarpa] >YP_009584691.1 ribosomal protein L23 [Viola phalacrocarpa] >YP_009584755.1 ribosomal protein L23 [Viola raddeana] >YP_009584775.1 ribosomal protein L23 [Viola raddeana] >YP_009584839.1 ribosomal protein L23 [Viola websteri] >YP_009584859.1 ribosomal protein L23 [Viola websteri] >YP_009650785.1 ribosomal protein L23 [Kandelia obovata] >YP_009650802.1 ribosomal protein L23 [Kandelia obovata] >YP_009650951.1 ribosomal protein L23 [Hydnocarpus hainanensis] >YP_009650969.1 ribosomal protein L23 [Hydnocarpus hainanensis] >YP_009654989.1 ribosomal protein L23 [Rhizophora stylosa] >YP_009655007.1 ribosomal protein L23 [Rhizophora stylosa] >YP_009675473.1 ribosomal protein L23 [Banara guianensis] >YP_009675494.1 ribosomal protein L23 [Banara guianensis] >YP_009726492.1 ribosomal protein L23 [Flacourtia rukam] >YP_009726512.1 ribosomal protein L23 [Flacourtia rukam] >YP_009729604.1 ribosomal protein L23 [Homalium cochinchinense] >YP_009740299.1 ribosomal protein L23 [Rhizophora x lamarckii] >YP_009740318.1 ribosomal protein L23 [Rhizophora x lamarckii] >YP_009742791.1 ribosomal protein L23 [Flacourtia jangomas] >YP_009742812.1 ribosomal protein L23 [Flacourtia jangomas] >YP_009862743.1 ribosomal protein L23 [Pellacalyx yunnanensis] >YP_009862761.1 ribosomal protein L23 [Pellacalyx yunnanensis] >YP_009927496.1 ribosomal protein L23 [Viola ulleungdoensis] >YP_009927517.1 ribosomal protein L23 [Viola ulleungdoensis] >YP_010044946.1 ribosomal protein L23 [Dianyuea turbinata] >YP_010044968.1 ribosomal protein L23 [Dianyuea turbinata] >YP_010145844.1 ribosomal protein L23 [Xylosma longifolia] >YP_010145862.1 ribosomal protein L23 [Xylosma longifolia] >YP_010160874.1 ribosomal protein L23 [Baccaurea ramiflora] >YP_010160893.1 ribosomal protein L23 [Baccaurea ramiflora] >AGS12723.1 ribosomal protein L23 [Bhesa archboldiana] >AGS12738.1 ribosomal protein L23 [Humiria balsamifera] >AGS12742.1 ribosomal protein L23 [Microdesmis puberula] >AMC32167.1 ribosomal protein L23 [Viola pedatifida] >QFP99249.1 ribosomal protein L23 [Viola sp. JY-2019] >QGU84025.1 ribosomal protein L23 [Dovyalis caffra] >QGU84113.1 ribosomal protein L23 [Flacourtia inermis] >QGU84539.1 ribosomal protein L23 [Scolopia saeva] >QGU84626.1 ribosomal protein L23 [Scolopia chinensis] >QGU84884.1 ribosomal protein L23 [Prockia crucis] >QGX43659.1 ribosomal protein L23 [Rhizophora mucronata] >QRK25638.1 ribosomal protein L23 [Rhizophora apiculata] >QRK25722.1 ribosomal protein L23 [Bruguiera gymnorhiza] >QTH78913.1 ribosomal protein L23 [Viola selkirkii] >QWE50782.1 ribosomal protein L23 [Bruguiera parviflora] >QWE50866.1 ribosomal protein L23 [Bruguiera sexangula] >QWX90254.1 ribosomal protein L23 [Viola verecunda])

HSP 1 Score: 175.3 bits (443), Expect = 2.5e-40
Identity = 85/93 (91.40%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGR 60
          MDGIKYAVFTDKSIRLLGKNQYTSNVES STRT+IKHWVELFFGVK+IAMNSHRLP KGR
Sbjct: 1  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 RMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT 94
          RMRPIMGHTMHYRRM+ITLQ GYS  PLRKKRT
Sbjct: 61 RMRPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93

[Close]

BLAST of PI0014349 vs. TAIR 10
Match: ATCG00840.1 (ribosomal protein L23.1 )

HSP 1 Score: 164.5 bits (415), Expect = 4.2e-41
Identity = 80/93 (86.02%), Postives = 85/93 (91.40%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGR 60
          MDGIKYAVFTDKSIRLLGKNQYT NVES STRT+IKHWVELFFGVK+IAMNSHRLP K +
Sbjct: 1  MDGIKYAVFTDKSIRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKVK 60

Query: 61 RMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT 94
          RM PI+GHTMHYRRM+ITLQ GYS  PLRKKRT
Sbjct: 61 RMGPILGHTMHYRRMIITLQPGYSIPPLRKKRT 93

[Close]

BLAST of PI0014349 vs. TAIR 10
Match: ATCG01300.1 (ribosomal protein L23 )

HSP 1 Score: 164.5 bits (415), Expect = 4.2e-41
Identity = 80/93 (86.02%), Postives = 85/93 (91.40%), Query Frame = 0


Query: 1  MDGIKYAVFTDKSIRLLGKNQYTSNVESRSTRTKIKHWVELFFGVKIIAMNSHRLPRKGR 60
          MDGIKYAVFTDKSIRLLGKNQYT NVES STRT+IKHWVELFFGVK+IAMNSHRLP K +
Sbjct: 1  MDGIKYAVFTDKSIRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKVK 60

Query: 61 RMRPIMGHTMHYRRMVITLQSGYSTRPLRKKRT 94
          RM PI+GHTMHYRRM+ITLQ GYS  PLRKKRT
Sbjct: 61 RMGPILGHTMHYRRMIITLQPGYSIPPLRKKRT 93

The following BLAST results are available for this feature:

BLAST of PI0014349 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZK6	2.2e-42	90.32	50S ribosomal protein L23, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl23-A P...	[more]
Q0ZIV5	2.2e-42	90.32	50S ribosomal protein L23, chloroplastic OS=Vitis vinifera OX=29760 GN=rpl23-A P...	[more]
Q09MB3	4.8e-42	89.25	50S ribosomal protein L23, chloroplastic OS=Citrus sinensis OX=2711 GN=rpl23-A P...	[more]
Q06R67	6.3e-42	89.25	50S ribosomal protein L23, chloroplastic OS=Jasminum nudiflorum OX=126431 GN=rpl...	[more]
Q0PUX7	8.2e-42	89.25	50S ribosomal protein L23, chloroplastic OS=Fragaria ananassa OX=3747 GN=rpl23 P...	[more]

BLAST of PI0014349 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A482EVN3	3.2e-41	92.47	50S ribosomal protein L23, chloroplastic OS=Azara serrata OX=77060 GN=rpl23 PE=3...	[more]
G0YDX1	3.2e-41	92.47	50S ribosomal protein L23, chloroplastic OS=Erythrospermum phytolaccoides OX=124...	[more]
A0A411K440	9.4e-41	91.40	Ribosomal protein L23 OS=Halophytum ameghinoi OX=124817 GN=rpl23 PE=3 SV=1	[more]
A0A6C0SM69	1.2e-40	91.40	50S ribosomal protein L23, chloroplastic OS=Flacourtia rukam OX=1085434 GN=rpl23...	[more]
A0A650FC08	1.2e-40	91.40	50S ribosomal protein L23, chloroplastic OS=Dovyalis caffra OX=77055 GN=rpl23 PE...	[more]

BLAST of PI0014349 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009573518.1	6.7e-41	92.47	ribosomal protein L23 [Azara serrata] >YP_009573538.1 ribosomal protein L23 [Aza...	[more]
YP_009557356.1	1.9e-40	91.40	ribosomal protein L23 [Halophytum ameghinoi] >QBC72085.1 ribosomal protein L23 [...	[more]
YP_009767871.1	2.5e-40	91.40	ribosomal protein L23 [Dermatophyllum secundiflorum] >YP_009767890.1 ribosomal p...	[more]
YP_009570400.1	2.5e-40	91.40	ribosomal protein L23 [Anredera cordifolia] >YP_009570419.1 ribosomal protein L2...	[more]
YP_009473928.1	2.5e-40	91.40	ribosomal protein L23 [Flacourtia indica] >YP_009473949.1 ribosomal protein L23 ...	[more]

BLAST of PI0014349 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00840.1	4.2e-41	86.02	ribosomal protein L23.1	[more]
ATCG01300.1	4.2e-41	86.02	ribosomal protein L23	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..85 e-value: 3.0E-18 score: 68.0
IPR013025	Ribosomal protein L25/L23	PFAM	PF00276	Ribosomal_L23	coord: 4..84 e-value: 1.1E-16 score: 60.9
IPR013025	Ribosomal protein L25/L23	PANTHER	PTHR11620	60S RIBOSOMAL PROTEIN L23A	coord: 1..89
IPR013025	Ribosomal protein L25/L23	HAMAP	MF_01369_B	Ribosomal_L23_B	coord: 1..91 score: 16.533043
None	No IPR available	PANTHER	PTHR11620:SF69	50S RIBOSOMAL PROTEIN L23, CHLOROPLASTIC	coord: 1..89
IPR001014	Ribosomal protein L23/L25, conserved site	PROSITE	PS00050	RIBOSOMAL_L23	coord: 73..88
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 1..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0014349.1	PI0014349.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome