PI0014346 (gene) Melon (PI 482460) v1

Overview


Name	PI0014346
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Polyubiquitin-like
Location	chr06: 25778536 .. 25779178 (-)
RNA-Seq Expression	PI0014346
Synteny	PI0014346

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAAAATGTAAAAAAGAAGAAGAAGACCTAATTGTAGCAGCCATTGAAGCTGTGCAGGCATTACCAGACATTGAATTCCTTCTTTTTGAAGCCTTTGATTTTTTGGAGAATGGAGAGAATGCTGCAATGTTTATGGCAGTGAATGCAAATTTACGAAGCAGGTGGTTGAGGAAAAAGCTTCCACCAACAATACAAATCTTTATAAGGAAAACAATAGATGGATCCATGAAGGGTTTAAATGTTTCCAAGTTCATTACGGTCGTGGAATTGAAAGCTACACTTTATGGAAAGGAAGGGTATCCGCCAACCAAAATCCATCTCAGTTATAATGGAAAGCAGCTTAAAGATGAAAGAAGTATATCAGATTATAACATAAAAGATTACAGTACTGTTGACATTGATTTGTTTTAATTAACCTGTGTGGCTGTTAGTATTCTATGTATTGTACTCAATGTCAACTACATACCTTTGGCCACATAATTATTAATTTGTTGGTTTGCTGGATTTATATATTAAGTTTCTTTGCTTATTATTGTTTTCATTATTATTCAGCTTTAATCTTGATGTTGGAATTTATGGTGGAAAATCTCTCCATAGCAGTAGAATGGTCTCAGAGAAGAAAGGAAAAATAAGGAGGTAA

mRNA sequence

ATGCCAAAATGTAAAAAAGAAGAAGAAGACCTAATTGTAGCAGCCATTGAAGCTGTGCAGGCATTACCAGACATTGAATTCCTTCTTTTTGAAGCCTTTGATTTTTTGGAGAATGGAGAGAATGCTGCAATGTTTATGGCAGTGAATGCAAATTTACGAAGCAGGTGGTTGAGGAAAAAGCTTCCACCAACAATACAAATCTTTATAAGGAAAACAATAGATGGATCCATGAAGGGTTTAAATGTTTCCAAGTTCATTACGGTCGTGGAATTGAAAGCTACACTTTATGGAAAGGAAGGCTTTAATCTTGATGTTGGAATTTATGGTGGAAAATCTCTCCATAGCAGTAGAATGGTCTCAGAGAAGAAAGGAAAAATAAGGAGGTAA

Coding sequence (CDS)

ATGCCAAAATGTAAAAAAGAAGAAGAAGACCTAATTGTAGCAGCCATTGAAGCTGTGCAGGCATTACCAGACATTGAATTCCTTCTTTTTGAAGCCTTTGATTTTTTGGAGAATGGAGAGAATGCTGCAATGTTTATGGCAGTGAATGCAAATTTACGAAGCAGGTGGTTGAGGAAAAAGCTTCCACCAACAATACAAATCTTTATAAGGAAAACAATAGATGGATCCATGAAGGGTTTAAATGTTTCCAAGTTCATTACGGTCGTGGAATTGAAAGCTACACTTTATGGAAAGGAAGGCTTTAATCTTGATGTTGGAATTTATGGTGGAAAATCTCTCCATAGCAGTAGAATGGTCTCAGAGAAGAAAGGAAAAATAAGGAGGTAA

Protein sequence

MPKCKKEEEDLIVAAIEAVQALPDIEFLLFEAFDFLENGENAAMFMAVNANLRSRWLRKKLPPTIQIFIRKTIDGSMKGLNVSKFITVVELKATLYGKEGFNLDVGIYGGKSLHSSRMVSEKKGKIRR

Homology

[Close]

BLAST of PI0014346 vs. ExPASy TrEMBL
Match: A0A5D3BQI8 (Polyubiquitin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00450 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 8.2e-19
Identity = 63/113 (55.75%), Postives = 79/113 (69.91%), Query Frame = 0


Query: 13  VAAIEAVQALPDI-EFLLFEAFDFLENGENAAMFMAVNANLRSRWLRKKL-PPTIQIFIR 72
           +AAIEAVQALPDI E LLFEAFDFLE  ++A MFMA+N NLRS+WLR+KL     +IF+ 
Sbjct: 19  LAAIEAVQALPDIHEDLLFEAFDFLEKRKHAKMFMAINENLRSKWLRRKLWQEPSEIFV- 78

Query: 73  KTIDGSMKGLNVSKFITVVELKATLYGKEGF--NLDVGIYGGKSLHSSRMVSE 122
             +DG+M  L+VS FIT+ ELK  LY K+G+       IY GK L   R +S+
Sbjct: 79  IAMDGNMISLSVSTFITIDELKVKLYEKKGYFPTKVTLIYAGKLLEDGRSLSD 130

[Close]

BLAST of PI0014346 vs. ExPASy TrEMBL
Match: A0A5A7SML9 (Polyubiquitin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00520 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 7.6e-17
Identity = 62/113 (54.87%), Postives = 76/113 (67.26%), Query Frame = 0


Query: 13  VAAIEAVQALPDI-EFLLFEAFDFLENGENAAMFMAVNANLRSRWLRKKL-PPTIQIFIR 72
           +AAIEAVQAL DI E L FEAFDFLE   NA MF+A+NANLRSRWLR+KL  P+++I + 
Sbjct: 19  LAAIEAVQALSDIDEDLFFEAFDFLEKKNNAKMFIAMNANLRSRWLRRKLWSPSMKILL- 78

Query: 73  KTIDGSMKGLNVSKFITVVELKATLYGKEGF--NLDVGIYGGKSLHSSRMVSE 122
           KTI G    + VS FIT+ ELK  LY KE +       I  GK L + R +S+
Sbjct: 79  KTIYGKTIVVKVSAFITIEELKVKLYEKEAYLPTKVRFICAGKELENGRSLSD 130

[Close]

BLAST of PI0014346 vs. ExPASy TrEMBL
Match: A0A6J1DNT8 (ubiquitin-like OS=Momordica charantia OX=3673 GN=LOC111022114 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 9.0e-10
Identity = 49/125 (39.20%), Postives = 70/125 (56.00%), Query Frame = 0


Query: 1   MPKCKKEEEDLIVAAIEAVQALPDI-EFLLFEAFDFLENGENAAMFMAVNANLRSRWLRK 60
           +P  +  E   I A I+AVQALPD+ E  + +A DFL+N +N  +FMA+   LR RWL +
Sbjct: 5   IPSYETSESISIGAVIKAVQALPDMDEDFILDACDFLQNPQNGEIFMALAPKLRKRWLLR 64

Query: 61  KLPPTIQIFIR-KTIDGSMKGLNVSKFITVVELKATLYGKEGFNLDVG--IYGGKSLHSS 120
            LP   Q+ I  +T+ G   GL V    TV  +KA + GKEG+  +     YGG  L  +
Sbjct: 65  NLPRPGQMKINFQTVCGKRFGLEVLASDTVEVVKAKIEGKEGYPPEKQRLFYGGVQLEGA 124

Query: 121 RMVSE 122
             ++E
Sbjct: 125 TTLAE 129

[Close]

BLAST of PI0014346 vs. ExPASy TrEMBL
Match: A0A6J1DN50 (ubiquitin-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022115 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.0e-08
Identity = 44/113 (38.94%), Postives = 65/113 (57.52%), Query Frame = 0


Query: 12  IVAAIEAVQALPDI-EFLLFEAFDFLENGENAAMFMAVNANLRSRWLRKKLPPTIQIFIR 71
           I A I+AVQALPD+ E L+ +A DF +N +N  +FMA++  LR RWL + LP + QI + 
Sbjct: 13  IGAVIKAVQALPDMDEDLILDACDFFQNPQNGEIFMALDRKLRKRWLLRNLPRSGQINV- 72

Query: 72  KTIDGSMKGLNVSKFITVVELKATLYGKEGFNLDVG--IYGGKSLHSSRMVSE 122
           K + G      +    T+  +KA +   EG+  D    IYGG+ L   R ++E
Sbjct: 73  KMLTGKTLCFEILASNTIDVVKAKIEAMEGYPPDQQRLIYGGRQLEDGRTLAE 124

[Close]

BLAST of PI0014346 vs. ExPASy TrEMBL
Match: A0A6J1DL46 (ubiquitin-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022115 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.7e-08
Identity = 44/114 (38.60%), Postives = 65/114 (57.02%), Query Frame = 0


Query: 12  IVAAIEAVQALPDI-EFLLFEAFDFLENGENAAMFMAVNANLRSRWLRKKLPPTIQIFIR 71
           I A I+AVQALPD+ E L+ +A DF +N +N  +FMA++  LR RWL + LP + Q+ I 
Sbjct: 13  IGAVIKAVQALPDMDEDLILDACDFFQNPQNGEIFMALDRKLRKRWLLRNLPRSGQMQIN 72

Query: 72  -KTIDGSMKGLNVSKFITVVELKATLYGKEGFNLDVG--IYGGKSLHSSRMVSE 122
            K + G      +    T+  +KA +   EG+  D    IYGG+ L   R ++E
Sbjct: 73  VKMLTGKTLCFEILASNTIDVVKAKIEAMEGYPPDQQRLIYGGRQLEDGRTLAE 126

[Close]

BLAST of PI0014346 vs. NCBI nr
Match: KAA0025486.1 (polyubiquitin-like [Cucumis melo var. makuwa] >TYK00379.1 polyubiquitin-like [Cucumis melo var. makuwa])

HSP 1 Score: 103.2 bits (256), Expect = 1.7e-18
Identity = 63/113 (55.75%), Postives = 79/113 (69.91%), Query Frame = 0


Query: 13  VAAIEAVQALPDI-EFLLFEAFDFLENGENAAMFMAVNANLRSRWLRKKL-PPTIQIFIR 72
           +AAIEAVQALPDI E LLFEAFDFLE  ++A MFMA+N NLRS+WLR+KL     +IF+ 
Sbjct: 19  LAAIEAVQALPDIHEDLLFEAFDFLEKRKHAKMFMAINENLRSKWLRRKLWQEPSEIFV- 78

Query: 73  KTIDGSMKGLNVSKFITVVELKATLYGKEGF--NLDVGIYGGKSLHSSRMVSE 122
             +DG+M  L+VS FIT+ ELK  LY K+G+       IY GK L   R +S+
Sbjct: 79  IAMDGNMISLSVSTFITIDELKVKLYEKKGYFPTKVTLIYAGKLLEDGRSLSD 130

[Close]

BLAST of PI0014346 vs. NCBI nr
Match: KAA0025481.1 (polyubiquitin-like [Cucumis melo var. makuwa] >TYK00384.1 polyubiquitin-like [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 1.6e-16
Identity = 62/113 (54.87%), Postives = 76/113 (67.26%), Query Frame = 0


Query: 13  VAAIEAVQALPDI-EFLLFEAFDFLENGENAAMFMAVNANLRSRWLRKKL-PPTIQIFIR 72
           +AAIEAVQAL DI E L FEAFDFLE   NA MF+A+NANLRSRWLR+KL  P+++I + 
Sbjct: 19  LAAIEAVQALSDIDEDLFFEAFDFLEKKNNAKMFIAMNANLRSRWLRRKLWSPSMKILL- 78

Query: 73  KTIDGSMKGLNVSKFITVVELKATLYGKEGF--NLDVGIYGGKSLHSSRMVSE 122
           KTI G    + VS FIT+ ELK  LY KE +       I  GK L + R +S+
Sbjct: 79  KTIYGKTIVVKVSAFITIEELKVKLYEKEAYLPTKVRFICAGKELENGRSLSD 130

[Close]

BLAST of PI0014346 vs. NCBI nr
Match: XP_022154969.1 (ubiquitin-like [Momordica charantia])

HSP 1 Score: 73.2 bits (178), Expect = 1.9e-09
Identity = 49/125 (39.20%), Postives = 70/125 (56.00%), Query Frame = 0


Query: 1   MPKCKKEEEDLIVAAIEAVQALPDI-EFLLFEAFDFLENGENAAMFMAVNANLRSRWLRK 60
           +P  +  E   I A I+AVQALPD+ E  + +A DFL+N +N  +FMA+   LR RWL +
Sbjct: 5   IPSYETSESISIGAVIKAVQALPDMDEDFILDACDFLQNPQNGEIFMALAPKLRKRWLLR 64

Query: 61  KLPPTIQIFIR-KTIDGSMKGLNVSKFITVVELKATLYGKEGFNLDVG--IYGGKSLHSS 120
            LP   Q+ I  +T+ G   GL V    TV  +KA + GKEG+  +     YGG  L  +
Sbjct: 65  NLPRPGQMKINFQTVCGKRFGLEVLASDTVEVVKAKIEGKEGYPPEKQRLFYGGVQLEGA 124

Query: 121 RMVSE 122
             ++E
Sbjct: 125 TTLAE 129

[Close]

BLAST of PI0014346 vs. NCBI nr
Match: XP_022154972.1 (ubiquitin-like isoform X2 [Momordica charantia])

HSP 1 Score: 69.7 bits (169), Expect = 2.1e-08
Identity = 44/113 (38.94%), Postives = 65/113 (57.52%), Query Frame = 0


Query: 12  IVAAIEAVQALPDI-EFLLFEAFDFLENGENAAMFMAVNANLRSRWLRKKLPPTIQIFIR 71
           I A I+AVQALPD+ E L+ +A DF +N +N  +FMA++  LR RWL + LP + QI + 
Sbjct: 13  IGAVIKAVQALPDMDEDLILDACDFFQNPQNGEIFMALDRKLRKRWLLRNLPRSGQINV- 72

Query: 72  KTIDGSMKGLNVSKFITVVELKATLYGKEGFNLDVG--IYGGKSLHSSRMVSE 122
           K + G      +    T+  +KA +   EG+  D    IYGG+ L   R ++E
Sbjct: 73  KMLTGKTLCFEILASNTIDVVKAKIEAMEGYPPDQQRLIYGGRQLEDGRTLAE 124

[Close]

BLAST of PI0014346 vs. NCBI nr
Match: XP_022154970.1 (ubiquitin-like isoform X1 [Momordica charantia] >XP_022154971.1 ubiquitin-like isoform X1 [Momordica charantia])

HSP 1 Score: 68.9 bits (167), Expect = 3.5e-08
Identity = 44/114 (38.60%), Postives = 65/114 (57.02%), Query Frame = 0


Query: 12  IVAAIEAVQALPDI-EFLLFEAFDFLENGENAAMFMAVNANLRSRWLRKKLPPTIQIFIR 71
           I A I+AVQALPD+ E L+ +A DF +N +N  +FMA++  LR RWL + LP + Q+ I 
Sbjct: 13  IGAVIKAVQALPDMDEDLILDACDFFQNPQNGEIFMALDRKLRKRWLLRNLPRSGQMQIN 72

Query: 72  -KTIDGSMKGLNVSKFITVVELKATLYGKEGFNLDVG--IYGGKSLHSSRMVSE 122
            K + G      +    T+  +KA +   EG+  D    IYGG+ L   R ++E
Sbjct: 73  VKMLTGKTLCFEILASNTIDVVKAKIEAMEGYPPDQQRLIYGGRQLEDGRTLAE 126

[Close]

BLAST of PI0014346 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 1.3e-05
Identity = 23/54 (42.59%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 15  AIEAVQALPDI-EFLLFEAFDFLENGENAAMFMAVNANLRSRWLRKKLPPTIQI 68
           A++A+QALPD+ + LL +A D LE+   A  F+A++ +LR +WL +KL P+  +
Sbjct: 744 ALDALQALPDMDDELLLDACDLLEDERKAKTFLALDVSLRRKWLVRKLRPSANV 797

[Close]

BLAST of PI0014346 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 1.3e-05
Identity = 23/54 (42.59%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 15  AIEAVQALPDI-EFLLFEAFDFLENGENAAMFMAVNANLRSRWLRKKLPPTIQI 68
           A++A+QALPD+ + LL +A D LE+   A  F+A++ +LR +WL +KL P+  +
Sbjct: 721 ALDALQALPDMDDELLLDACDLLEDERKAKTFLALDVSLRRKWLVRKLRPSANV 774

[Close]

BLAST of PI0014346 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 2.3e-05
Identity = 24/65 (36.92%), Postives = 40/65 (61.54%), Query Frame = 0


Query: 2   PKCKKEEEDLIVAAIEAVQALPDI-EFLLFEAFDFLENGENAAMFMAVNANLRSRWLRKK 61
           P+  + +   I   +EA+QALPD+ + L+ +A D LE+   A  F+A++  LR +WL +K
Sbjct: 374 PRVDETQTMSIEDTVEAIQALPDMDDELILDACDLLEDKLKAKTFLALDVKLRKKWLLRK 433

Query: 62  LPPTI 66
           L P +
Sbjct: 434 LRPQV 438

[Close]

BLAST of PI0014346 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 46.2 bits (108), Expect = 2.3e-05
Identity = 24/65 (36.92%), Postives = 40/65 (61.54%), Query Frame = 0


Query: 2   PKCKKEEEDLIVAAIEAVQALPDI-EFLLFEAFDFLENGENAAMFMAVNANLRSRWLRKK 61
           P+  + +   I   +EA+QALPD+ + L+ +A D LE+   A  F+A++  LR +WL +K
Sbjct: 374 PRVDETQTMSIEDTVEAIQALPDMDDELILDACDLLEDKLKAKTFLALDVKLRKKWLLRK 433

Query: 62  LPPTI 66
           L P +
Sbjct: 434 LRPQV 438

The following BLAST results are available for this feature:

BLAST of PI0014346 vs.


Match Name	E-value	Identity	Description

BLAST of PI0014346 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BQI8	8.2e-19	55.75	Polyubiquitin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G...	[more]
A0A5A7SML9	7.6e-17	54.87	Polyubiquitin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G...	[more]
A0A6J1DNT8	9.0e-10	39.20	ubiquitin-like OS=Momordica charantia OX=3673 GN=LOC111022114 PE=4 SV=1	[more]
A0A6J1DN50	1.0e-08	38.94	ubiquitin-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022115 PE=4 SV...	[more]
A0A6J1DL46	1.7e-08	38.60	ubiquitin-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022115 PE=4 SV...	[more]

BLAST of PI0014346 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025486.1	1.7e-18	55.75	polyubiquitin-like [Cucumis melo var. makuwa] >TYK00379.1 polyubiquitin-like [Cu...	[more]
KAA0025481.1	1.6e-16	54.87	polyubiquitin-like [Cucumis melo var. makuwa] >TYK00384.1 polyubiquitin-like [Cu...	[more]
XP_022154969.1	1.9e-09	39.20	ubiquitin-like [Momordica charantia]	[more]
XP_022154972.1	2.1e-08	38.94	ubiquitin-like isoform X2 [Momordica charantia]	[more]
XP_022154970.1	3.5e-08	38.60	ubiquitin-like isoform X1 [Momordica charantia] >XP_022154971.1 ubiquitin-like i...	[more]

BLAST of PI0014346 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G24960.1	1.3e-05	42.59	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G24960.2	1.3e-05	42.59	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G02210.1	2.3e-05	36.92	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.2	2.3e-05	36.92	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 61..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0014346.1	PI0014346.1	mRNA