PI0014298 (gene) Melon (PI 482460) v1

Overview
NamePI0014298
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionPentatricopeptide repeat-containing protein
Locationchr05: 105052 .. 107183 (-)
RNA-Seq ExpressionPI0014298
SyntenyPI0014298
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATCAGAGAGTCTGACACACAATCTGAGAGACCTACTGGGTGTAGACAGGAAAGGATTGTGATTGAGAATATATGGGAAGATAGAGCAGAGCCTAGTGATGGCGTGGGGCTGCAGATGACCCTCTTATTCTTCTCTAGCCGTGCCTACAGGCTTCGACCCTCCAACTTCTCCATTGCGCAGTTTTATAGCCTTGCAGATTCAGTATCACGCGCTCGACCTTTTTGTGATAGAGAGATAATACGAAACTCGGAGGCTTGGCTAGTGAAGGTTGTTTGCACTCTCTTTTTCGATCGCATTCCCTGAATGCTTGTTTTGGTTATCTAAGTAGAAACTTGAACCCTTCAATTGCTTTTGAGGTTATTAAGCGGTTTAGAGATCCCTTATTGGGTTTGAAGTTTTTTGAGTTTAGTAGAACACACCTGAGCATCAACCATACCTTTAATACCTATGATTTGCTCATGAGGAATCTCTGTAAAGTGGGTCTCAACGATTCTGCAAAAATTGTGTTTGATTGCATGAGGAGTGATGGGATTTTGCCGGATAGTTCCATTTTAGAACTCTTGGTGTCTTCATACGCTCGAATGGGAAAGTTAGATTCTGCCAAAAATTTTCTTAACGAGGTTCACTGTTATGGTATTAAAGTTAGTCCTTTTGTGTACAATAACCTGTTGAATATGTTGGTCAAGCAGAACCTAGTAGATGAAGCTGTCTTACTATTCAGGGAGCACTTGGAACAATATTTGTTCCAGATGTTTACAGCTTCAATATTTTAATTAGAGGATTGTGCAGAATAGGAGAAATTGATAAGGCTTTTGAGTTTTTCCAGAATATGGGAAATTTTGGTTGCTTTCCTGATATTGTTTCATATAATACGCTTATAAATGGGTTTTGTAGGGTCAATGAGATTAGCAAAGGGCATGATTTGCTAAAAGAAGTTATGTTATTAAAAGGGGTTTCCCCAGATGTTATAACCTATACATCAATTATATCAGGCTATTGCAAATTGGGTGATATGAGGGCAGCATCTGAGCTTTTTGACGAGATGGTTAGTTCTGGAATCAAACCCAACAACTTCACTTTCAATGTCCTCATTGATGGTTTTGGCAAGGTTGGAAACATGAGATCTGCTATGGTCATGTATGAAAAAATGCTTCTTCTTGGCTGTCCACCAGACGTGGTTACAGTCACTTCCCTGATTGATGGCTATTGCCGGGAAGGTGAAGTGAATCAAGGTTTGAAGCTCTGGGAGGAGATGAACATAAGAAATCTGTCTCCAAATGTGTATACCTATGCTGTGCTCATCAATGCTCTTTGTAAGGAAAATAGAATACAGGAGGCGAGAAATTTTTTGAGGCACTTGAAATCGAGTGAGGTTGTTCCCAAACCATTTATTTATAATCCCGTGATTGATGGGTTTTGCAAGGCTGGACAGGTCGATGAGGCAAACGTCATAGTGGCTGAGATGCAGGAGAAGAAATGCAGCCCAGATAAAATAACATTTACCATTCTTATTATTGGCAACTGTATGAAAGGGAGGATGGTGGAGGCAATTAGCACTTTTTATAAGATGATTGAGATCAACTGTATTCCAGATGAAATTACTATTAATTCTTTGATATCTTGCCTTCTGAAGGCTGGAATGCCTAATGAAGCCTCTCAAATCAAACAAGCTGCTTTACAGAAGCTCAACTTGGGCTTGTTATCGTTAGGAAGCCCGCTTACAAGAAAATCTTCACGTGTGCCAGTTGCTGTTTGTTGAGGTCTATTGTGTAGTGGACTAAGAATTTTCGGCCTGCAACTATTGGGAAGTGTTCTCCTGTTCTGTGCCAGATCACAAAATAAGCAAGTGAAGGATGAGACAAGTTGAGTACTAATAGACGGTTAGGACATTTACACTGACCCATTGGCCATGTTCAACTTCTATGCTGTTGTGAGGTGCCTGTTATTTAGAATAGAAATGTTCTCCCGGGTGGGGGGGGGGGGGGGGTTGGGGGGGGTCATAGGTTAAAATTATCAAGATTCTTTCTTTCATTATTGTTGCCATGCGAATTCTTAATGTTTCTGTTGCACTGCAGGCCAGTACTAGTTCGAGTTCTTACGTAAAAGGTTTAAAGCTCGCTGTCTGA

mRNA sequence

ATGAAGATCAGAGAGTCTGACACACAATCTGAGAGACCTACTGGGTGTAGACAGGAAAGGATTGTGATTGAGAATATATGGGAAGATAGAGCAGAGCCTAGTGATGGCGTGGGGCTGCAGATGACCCTCTTATTCTTCTCTAGCCGTGCCTACAGGCTTCGACCCTCCAACTTCTCCATTGCGCAGTTTTATAGCCTTGCAGATTCAGTATCACGCGCTCGACCTTTTTGTGATAGAGAGATAATACGAAACTCGGAGGCTTGGCTAGTGAAGGCCAGTACTAGTTCGAGTTCTTACGTAAAAGGTTTAAAGCTCGCTGTCTGA

Coding sequence (CDS)

ATGAAGATCAGAGAGTCTGACACACAATCTGAGAGACCTACTGGGTGTAGACAGGAAAGGATTGTGATTGAGAATATATGGGAAGATAGAGCAGAGCCTAGTGATGGCGTGGGGCTGCAGATGACCCTCTTATTCTTCTCTAGCCGTGCCTACAGGCTTCGACCCTCCAACTTCTCCATTGCGCAGTTTTATAGCCTTGCAGATTCAGTATCACGCGCTCGACCTTTTTGTGATAGAGAGATAATACGAAACTCGGAGGCTTGGCTAGTGAAGGCCAGTACTAGTTCGAGTTCTTACGTAAAAGGTTTAAAGCTCGCTGTCTGA

Protein sequence

MKIRESDTQSERPTGCRQERIVIENIWEDRAEPSDGVGLQMTLLFFSSRAYRLRPSNFSIAQFYSLADSVSRARPFCDREIIRNSEAWLVKASTSSSSYVKGLKLAV
Homology
[Close]
BLAST of PI0014298 vs. ExPASy TrEMBL
Match: A0A0A0LES7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000140 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 7.0e-48
Identity = 100/107 (93.46%), Postives = 104/107 (97.20%), Query Frame = 0 

Query: 1   MKIRESDTQSERPTGCRQERIVIENIWEDRAEPSDGVGLQMTLLFFSSRAYRLRPSNFSI 60
           M IRE DTQSERPTGC+QERIVIENIWEDRAEP+DGVGLQMTLLFFSSRAYRLR SNFSI
Sbjct: 1   MNIREPDTQSERPTGCKQERIVIENIWEDRAEPNDGVGLQMTLLFFSSRAYRLRTSNFSI 60

Query: 61  AQFYSLADSVSRARPFCDREIIRNSEAWLVKASTSSSSYVKGLKLAV 108
           AQFYSLADSVSRARPFCDREIIR+SEAWLVKASTSSSS+VKGLKLAV
Sbjct: 61  AQFYSLADSVSRARPFCDREIIRHSEAWLVKASTSSSSHVKGLKLAV 107

[Close]
BLAST of PI0014298 vs. ExPASy TrEMBL
Match: A0A1S3CB42 (pentatricopeptide repeat-containing protein At2g06000 OS=Cucumis melo OX=3656 GN=LOC103498823 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 3.5e-39
Identity = 84/91 (92.31%), Postives = 88/91 (96.70%), Query Frame = 0 

Query: 1  MKIRESDTQSERPTGCRQERIVIENIWEDRAEPSDGVGLQMTLLFFSSRAYRLRPSNFSI 60
          MKIRES+ QSERPT C+QERIVIENIWEDRAEP+DGVGLQMTLLFFSSRAYRLR SNFSI
Sbjct: 1  MKIRESERQSERPTVCKQERIVIENIWEDRAEPNDGVGLQMTLLFFSSRAYRLRLSNFSI 60

Query: 61 AQFYSLADSVSRARPFCDREIIRNSEAWLVK 92
          +QFYSLADSVSRARPFCDREIIRNSEAWLVK
Sbjct: 61 SQFYSLADSVSRARPFCDREIIRNSEAWLVK 91

[Close]
BLAST of PI0014298 vs. ExPASy TrEMBL
Match: A0A5A7V6K1 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G001250 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 3.5e-39
Identity = 84/91 (92.31%), Postives = 88/91 (96.70%), Query Frame = 0 

Query: 1  MKIRESDTQSERPTGCRQERIVIENIWEDRAEPSDGVGLQMTLLFFSSRAYRLRPSNFSI 60
          MKIRES+ QSERPT C+QERIVIENIWEDRAEP+DGVGLQMTLLFFSSRAYRLR SNFSI
Sbjct: 1  MKIRESERQSERPTVCKQERIVIENIWEDRAEPNDGVGLQMTLLFFSSRAYRLRLSNFSI 60

Query: 61 AQFYSLADSVSRARPFCDREIIRNSEAWLVK 92
          +QFYSLADSVSRARPFCDREIIRNSEAWLVK
Sbjct: 61 SQFYSLADSVSRARPFCDREIIRNSEAWLVK 91

[Close]
BLAST of PI0014298 vs. ExPASy TrEMBL
Match: A0A6J1G483 (pentatricopeptide repeat-containing protein At2g06000 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111450639 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.8e-32
Identity = 74/91 (81.32%), Postives = 79/91 (86.81%), Query Frame = 0 

Query: 4  RESDTQSERPT---GCRQERIVIENIWEDRAEPSDGVGLQMTLLFFSSRAYRLRPSNFSI 63
          +ES TQSE P    GC++ RIVIENIWEDRAEPSDGVGLQMTLLFFSSRAYR R SNF I
Sbjct: 8  QESVTQSEGPNRIPGCKRARIVIENIWEDRAEPSDGVGLQMTLLFFSSRAYRFRASNFFI 67

Query: 64 AQFYSLADSVSRARPFCDREIIRNSEAWLVK 92
          AQFYS+AD VSRARPFCDRE+IRN EAWLVK
Sbjct: 68 AQFYSIADGVSRARPFCDREVIRNPEAWLVK 98

[Close]
BLAST of PI0014298 vs. ExPASy TrEMBL
Match: A0A6J1G470 (pentatricopeptide repeat-containing protein At2g06000 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111450639 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.8e-32
Identity = 74/91 (81.32%), Postives = 79/91 (86.81%), Query Frame = 0 

Query: 4  RESDTQSERPT---GCRQERIVIENIWEDRAEPSDGVGLQMTLLFFSSRAYRLRPSNFSI 63
          +ES TQSE P    GC++ RIVIENIWEDRAEPSDGVGLQMTLLFFSSRAYR R SNF I
Sbjct: 8  QESVTQSEGPNRIPGCKRARIVIENIWEDRAEPSDGVGLQMTLLFFSSRAYRFRASNFFI 67

Query: 64 AQFYSLADSVSRARPFCDREIIRNSEAWLVK 92
          AQFYS+AD VSRARPFCDRE+IRN EAWLVK
Sbjct: 68 AQFYSIADGVSRARPFCDREVIRNPEAWLVK 98

[Close]
BLAST of PI0014298 vs. NCBI nr
Match: KAA0061465.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK10809.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 170.6 bits (431), Expect = 7.2e-39
Identity = 84/91 (92.31%), Postives = 88/91 (96.70%), Query Frame = 0 

Query: 1  MKIRESDTQSERPTGCRQERIVIENIWEDRAEPSDGVGLQMTLLFFSSRAYRLRPSNFSI 60
          MKIRES+ QSERPT C+QERIVIENIWEDRAEP+DGVGLQMTLLFFSSRAYRLR SNFSI
Sbjct: 1  MKIRESERQSERPTVCKQERIVIENIWEDRAEPNDGVGLQMTLLFFSSRAYRLRLSNFSI 60

Query: 61 AQFYSLADSVSRARPFCDREIIRNSEAWLVK 92
          +QFYSLADSVSRARPFCDREIIRNSEAWLVK
Sbjct: 61 SQFYSLADSVSRARPFCDREIIRNSEAWLVK 91

[Close]
BLAST of PI0014298 vs. NCBI nr
Match: XP_008459803.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Cucumis melo] >XP_008459808.1 PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Cucumis melo] >XP_008459817.1 PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Cucumis melo])

HSP 1 Score: 170.6 bits (431), Expect = 7.2e-39
Identity = 84/91 (92.31%), Postives = 88/91 (96.70%), Query Frame = 0 

Query: 1  MKIRESDTQSERPTGCRQERIVIENIWEDRAEPSDGVGLQMTLLFFSSRAYRLRPSNFSI 60
          MKIRES+ QSERPT C+QERIVIENIWEDRAEP+DGVGLQMTLLFFSSRAYRLR SNFSI
Sbjct: 1  MKIRESERQSERPTVCKQERIVIENIWEDRAEPNDGVGLQMTLLFFSSRAYRLRLSNFSI 60

Query: 61 AQFYSLADSVSRARPFCDREIIRNSEAWLVK 92
          +QFYSLADSVSRARPFCDREIIRNSEAWLVK
Sbjct: 61 SQFYSLADSVSRARPFCDREIIRNSEAWLVK 91

[Close]
BLAST of PI0014298 vs. NCBI nr
Match: XP_031736975.1 (pentatricopeptide repeat-containing protein At2g06000 [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 3.1e-34
Identity = 75/81 (92.59%), Postives = 78/81 (96.30%), Query Frame = 0 

Query: 1  MKIRESDTQSERPTGCRQERIVIENIWEDRAEPSDGVGLQMTLLFFSSRAYRLRPSNFSI 60
          M IRE DTQSERPTGC+QERIVIENIWEDRAEP+DGVGLQMTLLFFSSRAYRLR SNFSI
Sbjct: 1  MNIREPDTQSERPTGCKQERIVIENIWEDRAEPNDGVGLQMTLLFFSSRAYRLRTSNFSI 60

Query: 61 AQFYSLADSVSRARPFCDREI 82
          AQFYSLADSVSRARPFCDRE+
Sbjct: 61 AQFYSLADSVSRARPFCDREL 81

[Close]
BLAST of PI0014298 vs. NCBI nr
Match: XP_038890050.1 (pentatricopeptide repeat-containing protein At2g06000 [Benincasa hispida])

HSP 1 Score: 152.1 bits (383), Expect = 2.6e-33
Identity = 77/98 (78.57%), Postives = 83/98 (84.69%), Query Frame = 0 

Query: 1  MKIRE----SDTQSERPT---GCRQERIVIENIWEDRAEPSDGVGLQMTLLFFSSRAYRL 60
          MK R+    SDTQSERP+   GC++ RIVIENIWEDRAEPSDGVGLQMTLLFFSSR YR 
Sbjct: 1  MKCRDWKQISDTQSERPSRIPGCKRARIVIENIWEDRAEPSDGVGLQMTLLFFSSRTYRF 60

Query: 61 RPSNFSIAQFYSLADSVSRARPFCDREIIRNSEAWLVK 92
          R SNFSIAQFYSLAD VSRARPFCDRE++RN E WLVK
Sbjct: 61 RASNFSIAQFYSLADGVSRARPFCDREVLRNPETWLVK 98

[Close]
BLAST of PI0014298 vs. NCBI nr
Match: XP_023546864.1 (pentatricopeptide repeat-containing protein At2g06000 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 148.3 bits (373), Expect = 3.8e-32
Identity = 74/91 (81.32%), Postives = 79/91 (86.81%), Query Frame = 0 

Query: 4  RESDTQSERPT---GCRQERIVIENIWEDRAEPSDGVGLQMTLLFFSSRAYRLRPSNFSI 63
          +ES TQSE P    GC++ RIVIENIWEDRAEPSDGVGLQMTLLFFSSRAYR R SNF I
Sbjct: 8  QESVTQSEGPNRIPGCKRARIVIENIWEDRAEPSDGVGLQMTLLFFSSRAYRFRASNFFI 67

Query: 64 AQFYSLADSVSRARPFCDREIIRNSEAWLVK 92
          AQFYS+AD VSRARPFCDRE+IRN EAWLVK
Sbjct: 68 AQFYSIADGVSRARPFCDREVIRNPEAWLVK 98

The following BLAST results are available for this feature:
BLAST of PI0014298 vs.
Match NameE-valueIdentityDescription
BLAST of PI0014298 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LES77.0e-4893.46Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000140 PE=4 SV=1[more]
A0A1S3CB423.5e-3992.31pentatricopeptide repeat-containing protein At2g06000 OS=Cucumis melo OX=3656 GN... [more]
A0A5A7V6K13.5e-3992.31Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A6J1G4831.8e-3281.32pentatricopeptide repeat-containing protein At2g06000 isoform X2 OS=Cucurbita mo... [more]
A0A6J1G4701.8e-3281.32pentatricopeptide repeat-containing protein At2g06000 isoform X1 OS=Cucurbita mo... [more]
BLAST of PI0014298 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0061465.17.2e-3992.31pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK10809... [more]
XP_008459803.17.2e-3992.31PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Cucumis melo] ... [more]
XP_031736975.13.1e-3492.59pentatricopeptide repeat-containing protein At2g06000 [Cucumis sativus][more]
XP_038890050.12.6e-3378.57pentatricopeptide repeat-containing protein At2g06000 [Benincasa hispida][more]
XP_023546864.13.8e-3281.32pentatricopeptide repeat-containing protein At2g06000 isoform X1 [Cucurbita pepo... [more]
BLAST of PI0014298 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0014298.1PI0014298.1mRNA