PI0014298 (gene) Melon (PI 482460) v1

Overview


Name	PI0014298
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Pentatricopeptide repeat-containing protein
Location	chr05: 105052 .. 107183 (-)
RNA-Seq Expression	PI0014298
Synteny	PI0014298

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATCAGAGAGTCTGACACACAATCTGAGAGACCTACTGGGTGTAGACAGGAAAGGATTGTGATTGAGAATATATGGGAAGATAGAGCAGAGCCTAGTGATGGCGTGGGGCTGCAGATGACCCTCTTATTCTTCTCTAGCCGTGCCTACAGGCTTCGACCCTCCAACTTCTCCATTGCGCAGTTTTATAGCCTTGCAGATTCAGTATCACGCGCTCGACCTTTTTGTGATAGAGAGATAATACGAAACTCGGAGGCTTGGCTAGTGAAGGTTGTTTGCACTCTCTTTTTCGATCGCATTCCCTGAATGCTTGTTTTGGTTATCTAAGTAGAAACTTGAACCCTTCAATTGCTTTTGAGGTTATTAAGCGGTTTAGAGATCCCTTATTGGGTTTGAAGTTTTTTGAGTTTAGTAGAACACACCTGAGCATCAACCATACCTTTAATACCTATGATTTGCTCATGAGGAATCTCTGTAAAGTGGGTCTCAACGATTCTGCAAAAATTGTGTTTGATTGCATGAGGAGTGATGGGATTTTGCCGGATAGTTCCATTTTAGAACTCTTGGTGTCTTCATACGCTCGAATGGGAAAGTTAGATTCTGCCAAAAATTTTCTTAACGAGGTTCACTGTTATGGTATTAAAGTTAGTCCTTTTGTGTACAATAACCTGTTGAATATGTTGGTCAAGCAGAACCTAGTAGATGAAGCTGTCTTACTATTCAGGGAGCACTTGGAACAATATTTGTTCCAGATGTTTACAGCTTCAATATTTTAATTAGAGGATTGTGCAGAATAGGAGAAATTGATAAGGCTTTTGAGTTTTTCCAGAATATGGGAAATTTTGGTTGCTTTCCTGATATTGTTTCATATAATACGCTTATAAATGGGTTTTGTAGGGTCAATGAGATTAGCAAAGGGCATGATTTGCTAAAAGAAGTTATGTTATTAAAAGGGGTTTCCCCAGATGTTATAACCTATACATCAATTATATCAGGCTATTGCAAATTGGGTGATATGAGGGCAGCATCTGAGCTTTTTGACGAGATGGTTAGTTCTGGAATCAAACCCAACAACTTCACTTTCAATGTCCTCATTGATGGTTTTGGCAAGGTTGGAAACATGAGATCTGCTATGGTCATGTATGAAAAAATGCTTCTTCTTGGCTGTCCACCAGACGTGGTTACAGTCACTTCCCTGATTGATGGCTATTGCCGGGAAGGTGAAGTGAATCAAGGTTTGAAGCTCTGGGAGGAGATGAACATAAGAAATCTGTCTCCAAATGTGTATACCTATGCTGTGCTCATCAATGCTCTTTGTAAGGAAAATAGAATACAGGAGGCGAGAAATTTTTTGAGGCACTTGAAATCGAGTGAGGTTGTTCCCAAACCATTTATTTATAATCCCGTGATTGATGGGTTTTGCAAGGCTGGACAGGTCGATGAGGCAAACGTCATAGTGGCTGAGATGCAGGAGAAGAAATGCAGCCCAGATAAAATAACATTTACCATTCTTATTATTGGCAACTGTATGAAAGGGAGGATGGTGGAGGCAATTAGCACTTTTTATAAGATGATTGAGATCAACTGTATTCCAGATGAAATTACTATTAATTCTTTGATATCTTGCCTTCTGAAGGCTGGAATGCCTAATGAAGCCTCTCAAATCAAACAAGCTGCTTTACAGAAGCTCAACTTGGGCTTGTTATCGTTAGGAAGCCCGCTTACAAGAAAATCTTCACGTGTGCCAGTTGCTGTTTGTTGAGGTCTATTGTGTAGTGGACTAAGAATTTTCGGCCTGCAACTATTGGGAAGTGTTCTCCTGTTCTGTGCCAGATCACAAAATAAGCAAGTGAAGGATGAGACAAGTTGAGTACTAATAGACGGTTAGGACATTTACACTGACCCATTGGCCATGTTCAACTTCTATGCTGTTGTGAGGTGCCTGTTATTTAGAATAGAAATGTTCTCCCGGGTGGGGGGGGGGGGGGGGTTGGGGGGGGTCATAGGTTAAAATTATCAAGATTCTTTCTTTCATTATTGTTGCCATGCGAATTCTTAATGTTTCTGTTGCACTGCAGGCCAGTACTAGTTCGAGTTCTTACGTAAAAGGTTTAAAGCTCGCTGTCTGA

mRNA sequence

ATGAAGATCAGAGAGTCTGACACACAATCTGAGAGACCTACTGGGTGTAGACAGGAAAGGATTGTGATTGAGAATATATGGGAAGATAGAGCAGAGCCTAGTGATGGCGTGGGGCTGCAGATGACCCTCTTATTCTTCTCTAGCCGTGCCTACAGGCTTCGACCCTCCAACTTCTCCATTGCGCAGTTTTATAGCCTTGCAGATTCAGTATCACGCGCTCGACCTTTTTGTGATAGAGAGATAATACGAAACTCGGAGGCTTGGCTAGTGAAGGCCAGTACTAGTTCGAGTTCTTACGTAAAAGGTTTAAAGCTCGCTGTCTGA

Coding sequence (CDS)

ATGAAGATCAGAGAGTCTGACACACAATCTGAGAGACCTACTGGGTGTAGACAGGAAAGGATTGTGATTGAGAATATATGGGAAGATAGAGCAGAGCCTAGTGATGGCGTGGGGCTGCAGATGACCCTCTTATTCTTCTCTAGCCGTGCCTACAGGCTTCGACCCTCCAACTTCTCCATTGCGCAGTTTTATAGCCTTGCAGATTCAGTATCACGCGCTCGACCTTTTTGTGATAGAGAGATAATACGAAACTCGGAGGCTTGGCTAGTGAAGGCCAGTACTAGTTCGAGTTCTTACGTAAAAGGTTTAAAGCTCGCTGTCTGA

Protein sequence

MKIRESDTQSERPTGCRQERIVIENIWEDRAEPSDGVGLQMTLLFFSSRAYRLRPSNFSIAQFYSLADSVSRARPFCDREIIRNSEAWLVKASTSSSSYVKGLKLAV

Homology

[Close]

BLAST of PI0014298 vs. ExPASy TrEMBL
Match: A0A0A0LES7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000140 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 7.0e-48
Identity = 100/107 (93.46%), Postives = 104/107 (97.20%), Query Frame = 0


Query: 1   MKIRESDTQSERPTGCRQERIVIENIWEDRAEPSDGVGLQMTLLFFSSRAYRLRPSNFSI 60
           M IRE DTQSERPTGC+QERIVIENIWEDRAEP+DGVGLQMTLLFFSSRAYRLR SNFSI
Sbjct: 1   MNIREPDTQSERPTGCKQERIVIENIWEDRAEPNDGVGLQMTLLFFSSRAYRLRTSNFSI 60

Query: 61  AQFYSLADSVSRARPFCDREIIRNSEAWLVKASTSSSSYVKGLKLAV 108
           AQFYSLADSVSRARPFCDREIIR+SEAWLVKASTSSSS+VKGLKLAV
Sbjct: 61  AQFYSLADSVSRARPFCDREIIRHSEAWLVKASTSSSSHVKGLKLAV 107

[Close]

BLAST of PI0014298 vs. ExPASy TrEMBL
Match: A0A1S3CB42 (pentatricopeptide repeat-containing protein At2g06000 OS=Cucumis melo OX=3656 GN=LOC103498823 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 3.5e-39
Identity = 84/91 (92.31%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1  MKIRESDTQSERPTGCRQERIVIENIWEDRAEPSDGVGLQMTLLFFSSRAYRLRPSNFSI 60
          MKIRES+ QSERPT C+QERIVIENIWEDRAEP+DGVGLQMTLLFFSSRAYRLR SNFSI
Sbjct: 1  MKIRESERQSERPTVCKQERIVIENIWEDRAEPNDGVGLQMTLLFFSSRAYRLRLSNFSI 60

Query: 61 AQFYSLADSVSRARPFCDREIIRNSEAWLVK 92
          +QFYSLADSVSRARPFCDREIIRNSEAWLVK
Sbjct: 61 SQFYSLADSVSRARPFCDREIIRNSEAWLVK 91

[Close]

BLAST of PI0014298 vs. ExPASy TrEMBL
Match: A0A5A7V6K1 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G001250 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 3.5e-39
Identity = 84/91 (92.31%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1  MKIRESDTQSERPTGCRQERIVIENIWEDRAEPSDGVGLQMTLLFFSSRAYRLRPSNFSI 60
          MKIRES+ QSERPT C+QERIVIENIWEDRAEP+DGVGLQMTLLFFSSRAYRLR SNFSI
Sbjct: 1  MKIRESERQSERPTVCKQERIVIENIWEDRAEPNDGVGLQMTLLFFSSRAYRLRLSNFSI 60

Query: 61 AQFYSLADSVSRARPFCDREIIRNSEAWLVK 92
          +QFYSLADSVSRARPFCDREIIRNSEAWLVK
Sbjct: 61 SQFYSLADSVSRARPFCDREIIRNSEAWLVK 91

[Close]

BLAST of PI0014298 vs. ExPASy TrEMBL
Match: A0A6J1G483 (pentatricopeptide repeat-containing protein At2g06000 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111450639 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.8e-32
Identity = 74/91 (81.32%), Postives = 79/91 (86.81%), Query Frame = 0


Query: 4  RESDTQSERPT---GCRQERIVIENIWEDRAEPSDGVGLQMTLLFFSSRAYRLRPSNFSI 63
          +ES TQSE P    GC++ RIVIENIWEDRAEPSDGVGLQMTLLFFSSRAYR R SNF I
Sbjct: 8  QESVTQSEGPNRIPGCKRARIVIENIWEDRAEPSDGVGLQMTLLFFSSRAYRFRASNFFI 67

Query: 64 AQFYSLADSVSRARPFCDREIIRNSEAWLVK 92
          AQFYS+AD VSRARPFCDRE+IRN EAWLVK
Sbjct: 68 AQFYSIADGVSRARPFCDREVIRNPEAWLVK 98

[Close]

BLAST of PI0014298 vs. ExPASy TrEMBL
Match: A0A6J1G470 (pentatricopeptide repeat-containing protein At2g06000 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111450639 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.8e-32
Identity = 74/91 (81.32%), Postives = 79/91 (86.81%), Query Frame = 0


Query: 4  RESDTQSERPT---GCRQERIVIENIWEDRAEPSDGVGLQMTLLFFSSRAYRLRPSNFSI 63
          +ES TQSE P    GC++ RIVIENIWEDRAEPSDGVGLQMTLLFFSSRAYR R SNF I
Sbjct: 8  QESVTQSEGPNRIPGCKRARIVIENIWEDRAEPSDGVGLQMTLLFFSSRAYRFRASNFFI 67

Query: 64 AQFYSLADSVSRARPFCDREIIRNSEAWLVK 92
          AQFYS+AD VSRARPFCDRE+IRN EAWLVK
Sbjct: 68 AQFYSIADGVSRARPFCDREVIRNPEAWLVK 98

[Close]

BLAST of PI0014298 vs. NCBI nr
Match: KAA0061465.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK10809.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 170.6 bits (431), Expect = 7.2e-39
Identity = 84/91 (92.31%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1  MKIRESDTQSERPTGCRQERIVIENIWEDRAEPSDGVGLQMTLLFFSSRAYRLRPSNFSI 60
          MKIRES+ QSERPT C+QERIVIENIWEDRAEP+DGVGLQMTLLFFSSRAYRLR SNFSI
Sbjct: 1  MKIRESERQSERPTVCKQERIVIENIWEDRAEPNDGVGLQMTLLFFSSRAYRLRLSNFSI 60

Query: 61 AQFYSLADSVSRARPFCDREIIRNSEAWLVK 92
          +QFYSLADSVSRARPFCDREIIRNSEAWLVK
Sbjct: 61 SQFYSLADSVSRARPFCDREIIRNSEAWLVK 91

[Close]

BLAST of PI0014298 vs. NCBI nr
Match: XP_008459803.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Cucumis melo] >XP_008459808.1 PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Cucumis melo] >XP_008459817.1 PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Cucumis melo])

HSP 1 Score: 170.6 bits (431), Expect = 7.2e-39
Identity = 84/91 (92.31%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1  MKIRESDTQSERPTGCRQERIVIENIWEDRAEPSDGVGLQMTLLFFSSRAYRLRPSNFSI 60
          MKIRES+ QSERPT C+QERIVIENIWEDRAEP+DGVGLQMTLLFFSSRAYRLR SNFSI
Sbjct: 1  MKIRESERQSERPTVCKQERIVIENIWEDRAEPNDGVGLQMTLLFFSSRAYRLRLSNFSI 60

Query: 61 AQFYSLADSVSRARPFCDREIIRNSEAWLVK 92
          +QFYSLADSVSRARPFCDREIIRNSEAWLVK
Sbjct: 61 SQFYSLADSVSRARPFCDREIIRNSEAWLVK 91

[Close]

BLAST of PI0014298 vs. NCBI nr
Match: XP_031736975.1 (pentatricopeptide repeat-containing protein At2g06000 [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 3.1e-34
Identity = 75/81 (92.59%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 1  MKIRESDTQSERPTGCRQERIVIENIWEDRAEPSDGVGLQMTLLFFSSRAYRLRPSNFSI 60
          M IRE DTQSERPTGC+QERIVIENIWEDRAEP+DGVGLQMTLLFFSSRAYRLR SNFSI
Sbjct: 1  MNIREPDTQSERPTGCKQERIVIENIWEDRAEPNDGVGLQMTLLFFSSRAYRLRTSNFSI 60

Query: 61 AQFYSLADSVSRARPFCDREI 82
          AQFYSLADSVSRARPFCDRE+
Sbjct: 61 AQFYSLADSVSRARPFCDREL 81

[Close]

BLAST of PI0014298 vs. NCBI nr
Match: XP_038890050.1 (pentatricopeptide repeat-containing protein At2g06000 [Benincasa hispida])

HSP 1 Score: 152.1 bits (383), Expect = 2.6e-33
Identity = 77/98 (78.57%), Postives = 83/98 (84.69%), Query Frame = 0


Query: 1  MKIRE----SDTQSERPT---GCRQERIVIENIWEDRAEPSDGVGLQMTLLFFSSRAYRL 60
          MK R+    SDTQSERP+   GC++ RIVIENIWEDRAEPSDGVGLQMTLLFFSSR YR 
Sbjct: 1  MKCRDWKQISDTQSERPSRIPGCKRARIVIENIWEDRAEPSDGVGLQMTLLFFSSRTYRF 60

Query: 61 RPSNFSIAQFYSLADSVSRARPFCDREIIRNSEAWLVK 92
          R SNFSIAQFYSLAD VSRARPFCDRE++RN E WLVK
Sbjct: 61 RASNFSIAQFYSLADGVSRARPFCDREVLRNPETWLVK 98

[Close]

BLAST of PI0014298 vs. NCBI nr
Match: XP_023546864.1 (pentatricopeptide repeat-containing protein At2g06000 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 148.3 bits (373), Expect = 3.8e-32
Identity = 74/91 (81.32%), Postives = 79/91 (86.81%), Query Frame = 0


Query: 4  RESDTQSERPT---GCRQERIVIENIWEDRAEPSDGVGLQMTLLFFSSRAYRLRPSNFSI 63
          +ES TQSE P    GC++ RIVIENIWEDRAEPSDGVGLQMTLLFFSSRAYR R SNF I
Sbjct: 8  QESVTQSEGPNRIPGCKRARIVIENIWEDRAEPSDGVGLQMTLLFFSSRAYRFRASNFFI 67

Query: 64 AQFYSLADSVSRARPFCDREIIRNSEAWLVK 92
          AQFYS+AD VSRARPFCDRE+IRN EAWLVK
Sbjct: 68 AQFYSIADGVSRARPFCDREVIRNPEAWLVK 98

The following BLAST results are available for this feature:

BLAST of PI0014298 vs.


Match Name	E-value	Identity	Description

BLAST of PI0014298 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LES7	7.0e-48	93.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000140 PE=4 SV=1	[more]
A0A1S3CB42	3.5e-39	92.31	pentatricopeptide repeat-containing protein At2g06000 OS=Cucumis melo OX=3656 GN...	[more]
A0A5A7V6K1	3.5e-39	92.31	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A6J1G483	1.8e-32	81.32	pentatricopeptide repeat-containing protein At2g06000 isoform X2 OS=Cucurbita mo...	[more]
A0A6J1G470	1.8e-32	81.32	pentatricopeptide repeat-containing protein At2g06000 isoform X1 OS=Cucurbita mo...	[more]

BLAST of PI0014298 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061465.1	7.2e-39	92.31	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK10809...	[more]
XP_008459803.1	7.2e-39	92.31	PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Cucumis melo] ...	[more]
XP_031736975.1	3.1e-34	92.59	pentatricopeptide repeat-containing protein At2g06000 [Cucumis sativus]	[more]
XP_038890050.1	2.6e-33	78.57	pentatricopeptide repeat-containing protein At2g06000 [Benincasa hispida]	[more]
XP_023546864.1	3.8e-32	81.32	pentatricopeptide repeat-containing protein At2g06000 isoform X1 [Cucurbita pepo...	[more]

BLAST of PI0014298 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0014298.1	PI0014298.1	mRNA