PI0014207 (gene) Melon (PI 482460) v1

Overview


Name	PI0014207
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr10: 18290424 .. 18291822 (-)
RNA-Seq Expression	PI0014207
Synteny	PI0014207

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTCGGTCCTATTTCGTTTTGCAGCCGTAGCTATTGTGATGGTGAGTTTCTTCGTCGATATATCAGAATCCATTCCCAACTTGCATTACAGCTTCCATTTACCATTAGGTCCGTCCATCACACGTTTTTCCTCTCTGCCAGTAAGAGTTTAGCAAATTCCACTCATGGAGTATCCGTAGTTTTAGGTCTGATTGTTGCATTACAGCTTGTGCACAATACGCAATTTTTACTCTGGCACAACTGGCTTCATTATTGGTTTTTATTTCCTTCATTCTCTTTTGAAAACTTTAGTTTTAATTAATTTTACACATTCCTTTTTCAAAATAGGATTATGAATGTTGTATGGTGGATTCCAGTTTCCATTGTCTTTGATTAAATGATGGATTACATAGTCTTTTTTTATTGGATGTCTATCTTACAAATCTGATTTTGCAGGGTTTAAGAGACGATTCCATTGGACCAAACTAAAAGTTCGAGACGACAAGGAACTACAGCTGCGCTTCAGCAATTGGATGTAAGATCTCCATCCTAGCCTAACTAAAATCTATCGTTGAAATATGTGTGTGTGTGTTGCGTGTTTATAACTGTTGGTTCCTTTTAGGTCTTCTAACATAGTTCAATTAGTCTTACATTACTGATCTTTGCTGTAGGCCATCTTTGTATATATTAGATTAATATAACATTAAATTTACCTTCAATCATCAACCTAAGTTTTGTTAATTGGTGATTTAATATCAGATCATGTAATCTAGAATTCATGTGTTATTTCAACTTTACCTTTAGCTTAACTTGCTGGATCAATCAATGAATTAAAAAGTATGCGCACTTATCCACTAATGTTTAGGTCCTTTAAGGCCCTCTAGCATAGTCCGAACCCCTCAACTGTCGGTTCTTTCAATCCTCTTACACTTGTTTATATCACTACTTGAACGTTATATCGTTTTCTTGGTGAAAAGTTCATAAGTCCTGTTCAAGGCGACATAAATTTGATATTTAAAATGTGAAGTTCCGGGAAAATGAAGGCATATTGTTTATATTTGAGGTATATCATTAACTTAATACATGTTAGGTACATGTGAAGATAATCTGCTATTGTCAGAAACAGAGATCTCTTAGCCCAATTTGCTCTGTTTCTGTATCAAGAGTTTCTTTCACAATCACAGGTATTCCTATTCTTTCCCTCTCATTTTTAATGAAATAAGACAAGATCATACTCTGGAAAGTTTTGGGAGGAATAACATTTAAAATTAAAGACCTCAAATCTGGTAGTATTAGGAGCAAGTTGCAGCCTTCTATGGACATTGGTTTGTTTCTGTATTTGGAGATTGGATCCATTCCCTGAACTTGAAAATTTGAGGAAAAGTCCAAAAGTGGACAGCAAGGACTATGGCTGA

mRNA sequence

ATGAAATTCGGTCCTATTTCGTTTTGCAGCCGTAGCTATTGTGATGGTGAGTTTCTTCGTCGATATATCAGAATCCATTCCCAACTTGCATTACAGCTTCCATTTACCATTAGGTCCACGATTCCATTGGACCAAACTAAAAGTTCGAGACGACAAGGAACTACAGCTGCGCTTCAGCAATTGGATGTACATGTGAAGATAATCTGCTATTGTCAGAAACAGAGATCTCTTAGCCCAATTTGCTCTGTTTCTGTATCAAGAACCTCAAATCTGGTAGTATTAGGAGCAAGTTGCAGCCTTCTATGGACATTGGTTTGTTTCTGTATTTGGAGATTGGATCCATTCCCTGAACTTGAAAATTTGAGGAAAAGTCCAAAAGTGGACAGCAAGGACTATGGCTGA

Coding sequence (CDS)

ATGAAATTCGGTCCTATTTCGTTTTGCAGCCGTAGCTATTGTGATGGTGAGTTTCTTCGTCGATATATCAGAATCCATTCCCAACTTGCATTACAGCTTCCATTTACCATTAGGTCCACGATTCCATTGGACCAAACTAAAAGTTCGAGACGACAAGGAACTACAGCTGCGCTTCAGCAATTGGATGTACATGTGAAGATAATCTGCTATTGTCAGAAACAGAGATCTCTTAGCCCAATTTGCTCTGTTTCTGTATCAAGAACCTCAAATCTGGTAGTATTAGGAGCAAGTTGCAGCCTTCTATGGACATTGGTTTGTTTCTGTATTTGGAGATTGGATCCATTCCCTGAACTTGAAAATTTGAGGAAAAGTCCAAAAGTGGACAGCAAGGACTATGGCTGA

Protein sequence

MKFGPISFCSRSYCDGEFLRRYIRIHSQLALQLPFTIRSTIPLDQTKSSRRQGTTAALQQLDVHVKIICYCQKQRSLSPICSVSVSRTSNLVVLGASCSLLWTLVCFCIWRLDPFPELENLRKSPKVDSKDYG

Homology

[Close]

BLAST of PI0014207 vs. ExPASy TrEMBL
Match: A0A0A0KS70 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G598620 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.1e-55
Identity = 120/161 (74.53%), Postives = 123/161 (76.40%), Query Frame = 0


Query: 1   MKFGPISFCSRSYCDGEFLRRYIRIHSQLALQLPF----TIRSTIPLDQTKSSRRQGTTA 60
           MKFGPISFCSRSYCDGEFLRR IRIHS LALQLPF    +I  TIPLDQ KSSRRQGTTA
Sbjct: 1   MKFGPISFCSRSYCDGEFLRRNIRIHSHLALQLPFPLGPSITQTIPLDQPKSSRRQGTTA 60

Query: 61  ALQQLDVHVKIICYCQKQRSLSPICSVSVS------------------------RTSNLV 120
           ALQQLDVHV+IICYCQKQRSL PICSV  S                        +TSNLV
Sbjct: 61  ALQQLDVHVEIICYCQKQRSLRPICSVFCSKSFFHNSQTRSYSGKFWVEEHLKLKTSNLV 120

Query: 121 VLGASCSLLWTLVCFCIWRLDPFPELENLRKSPKVDSKDYG 134
           VLGASCS LW LVCFCIWRLDPFPELENLRKSPKVDSKDYG
Sbjct: 121 VLGASCS-LWRLVCFCIWRLDPFPELENLRKSPKVDSKDYG 160

[Close]

BLAST of PI0014207 vs. NCBI nr
Match: KAE8648704.1 (hypothetical protein Csa_008815 [Cucumis sativus])

HSP 1 Score: 107.5 bits (267), Expect = 9.3e-20
Identity = 57/88 (64.77%), Postives = 60/88 (68.18%), Query Frame = 0


Query: 1  MKFGPISFCSRSYCDGEFLRRYIRIHSQLALQLPFTIRSTIPLDQTKSSRRQGTTAALQQ 60
          MKFGPISFCSRSYCD                        TIPLDQ KSSRRQGTTAALQQ
Sbjct: 1  MKFGPISFCSRSYCD-----------------------ETIPLDQPKSSRRQGTTAALQQ 60

Query: 61 LDVHVKIICYCQKQRSLSPICSVSVSRT 89
          LDVHV+IICYCQKQRSL PICSV  S++
Sbjct: 61 LDVHVEIICYCQKQRSLRPICSVFCSKS 65

The following BLAST results are available for this feature:

BLAST of PI0014207 vs.


Match Name	E-value	Identity	Description

BLAST of PI0014207 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KS70	1.1e-55	74.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G598620 PE=4 SV=1	[more]

BLAST of PI0014207 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648704.1	9.3e-20	64.77	hypothetical protein Csa_008815 [Cucumis sativus]	[more]

BLAST of PI0014207 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0014207.1	PI0014207.1	mRNA