Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAACTCTTCTTACTTCTTTTGTGCAAGGAGGCCCTCTCAAAGTAGCCAAGTGTGGAGTTTGTGGCTTAGTTGGACATCCCAATGATAAGTGCCCCGACTTGATTGAGGATGTTAATGTCATTCGTAAATACGATCCCCACGGTAATACATACAATTCGGGATGGAGAGACAACCCAAACTTGAGATGGGGGAATGACAACCAAAAGCCCACCCAAGCAACATCCTCCTCTTCAAACCAAGGTATGAATCTTGAAGACATAGTCAAAGCTTTAGCTACTAACACTCTTTCTTTTCAACAAGAGATGAAACAACAAATGACTCAACTCACTACCGCCATAAGCAAGTTGGAAGGAAAAGGCAAGCTTCCGGTCCAACCGGATCATGCAAATATGAGTGTCATCTCACTAAGAAGTGGTAAGATTCTTGAAACCCCTTCTAGTGAAGAAAAAAGGTAA
mRNA sequence
ATGACAACTCTTCTTACTTCTTTTGTGCAAGGAGGCCCTCTCAAAGTAGCCAAGTGTGGAGTTTGTGGCTTAGTTGGACATCCCAATGATAAGTGCCCCGACTTGATTGAGGATGTTAATGTCATTCGTAAATACGATCCCCACGGTAATACATACAATTCGGGATGGAGAGACAACCCAAACTTGAGATGGGGGAATGACAACCAAAAGCCCACCCAAGCAACATCCTCCTCTTCAAACCAAGAGATGAAACAACAAATGACTCAACTCACTACCGCCATAAGCAAGTTGGAAGGAAAAGGCAAGCTTCCGGTCCAACCGGATCATGCAAATATGAGTGTCATCTCACTAAGAAGTGGTAAGATTCTTGAAACCCCTTCTAGTGAAGAAAAAAGGTAA
Coding sequence (CDS)
ATGACAACTCTTCTTACTTCTTTTGTGCAAGGAGGCCCTCTCAAAGTAGCCAAGTGTGGAGTTTGTGGCTTAGTTGGACATCCCAATGATAAGTGCCCCGACTTGATTGAGGATGTTAATGTCATTCGTAAATACGATCCCCACGGTAATACATACAATTCGGGATGGAGAGACAACCCAAACTTGAGATGGGGGAATGACAACCAAAAGCCCACCCAAGCAACATCCTCCTCTTCAAACCAAGAGATGAAACAACAAATGACTCAACTCACTACCGCCATAAGCAAGTTGGAAGGAAAAGGCAAGCTTCCGGTCCAACCGGATCATGCAAATATGAGTGTCATCTCACTAAGAAGTGGTAAGATTCTTGAAACCCCTTCTAGTGAAGAAAAAAGGTAA
Protein sequence
MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQEMKQQMTQLTTAISKLEGKGKLPVQPDHANMSVISLRSGKILETPSSEEKR
Homology
BLAST of PI0014196 vs. ExPASy TrEMBL
Match:
E5GBZ4 (Retrotransposon gag protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)
HSP 1 Score: 219.5 bits (558), Expect = 8.1e-54
Identity = 109/152 (71.71%), Postives = 124/152 (81.58%), Query Frame = 0
Query: 1 MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSGWRDNP 60
MTTLLTSFVQG PLKV KCGVC LVGHPNDKCP++IEDVN++RKYDP+GNTYNSGWRDNP
Sbjct: 57 MTTLLTSFVQGTPLKVTKCGVCRLVGHPNDKCPEVIEDVNIVRKYDPYGNTYNSGWRDNP 116
Query: 61 NLRWGNDNQKPTQATSSSSN--------------------QEMKQQMTQLTTAISKLEGK 120
NLRWGNDNQK TQA +SSN QEMKQQMTQLTTAISK++GK
Sbjct: 117 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGK 176
Query: 121 GKLPVQPDHANMSVISLRSGKILETPSSEEKR 133
GKLP QPD+AN+S ISLRSGKIL+TP+++EK+
Sbjct: 177 GKLPAQPDYANVSAISLRSGKILDTPTTKEKK 208
BLAST of PI0014196 vs. ExPASy TrEMBL
Match:
A0A5D3CRR8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00610 PE=4 SV=1)
HSP 1 Score: 218.4 bits (555), Expect = 1.8e-53
Identity = 108/152 (71.05%), Postives = 124/152 (81.58%), Query Frame = 0
Query: 1 MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSGWRDNP 60
MTTLLTSFVQG PLKV KCGVCGLVGHPNDKCP++IEDVN++RKYDPHGNTYNSGWRDNP
Sbjct: 142 MTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWRDNP 201
Query: 61 NLRWGNDNQKPTQATSSSSN--------------------QEMKQQMTQLTTAISKLEGK 120
NLRWGNDNQK TQA S+SSN QEMKQQMTQLTTAISK++GK
Sbjct: 202 NLRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGK 261
Query: 121 GKLPVQPDHANMSVISLRSGKILETPSSEEKR 133
GKL Q ++AN+S +SLRSGKIL+TP+++EK+
Sbjct: 262 GKLSAQSNYANVSAVSLRSGKILDTPTTKEKK 293
BLAST of PI0014196 vs. ExPASy TrEMBL
Match:
A0A5D3CFE7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G00840 PE=4 SV=1)
HSP 1 Score: 217.2 bits (552), Expect = 4.0e-53
Identity = 106/152 (69.74%), Postives = 121/152 (79.61%), Query Frame = 0
Query: 1 MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSGWRDNP 60
MTTLLTSFVQG P KV KCGVCGLVGHPNDKCP++IED+N++R+YDPHGNTYN GWRD P
Sbjct: 186 MTTLLTSFVQGTPFKVTKCGVCGLVGHPNDKCPEVIEDINIVRRYDPHGNTYNLGWRDKP 245
Query: 61 NLRWGNDNQKPTQATSSSSN--------------------QEMKQQMTQLTTAISKLEGK 120
NLRWGND Q TQA S+SSN QEMKQQMTQLTTAISK++GK
Sbjct: 246 NLRWGNDKQNHTQAPSTSSNQGTNLEDIIKALTTNTLSFQQEMKQQMTQLTTAISKMDGK 305
Query: 121 GKLPVQPDHANMSVISLRSGKILETPSSEEKR 133
GKLP QPDHAN+S ISLRSGKIL+TP+++EK+
Sbjct: 306 GKLPAQPDHANVSAISLRSGKILDTPTTKEKK 337
BLAST of PI0014196 vs. ExPASy TrEMBL
Match:
A0A5D3E1D2 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1212G00290 PE=4 SV=1)
HSP 1 Score: 217.2 bits (552), Expect = 4.0e-53
Identity = 108/152 (71.05%), Postives = 123/152 (80.92%), Query Frame = 0
Query: 1 MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSGWRDNP 60
MTTLLTSFVQG PLKV KCGVCGLVGHPNDK P++IEDVN++R+YDPHGNTYNSGWRDNP
Sbjct: 33 MTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKYPEVIEDVNIVRRYDPHGNTYNSGWRDNP 92
Query: 61 NLRWGNDNQKPTQATSSSSN--------------------QEMKQQMTQLTTAISKLEGK 120
LRWGNDNQK QA S+SSN QEMKQQMTQLTTAISK++GK
Sbjct: 93 KLRWGNDNQKHIQAPSTSSNQGTNLEDIIKALAINTLSFQQEMKQQMTQLTTAISKMDGK 152
Query: 121 GKLPVQPDHANMSVISLRSGKILETPSSEEKR 133
GKLP QP+HAN+S ISLRSGKIL+TP+++EK+
Sbjct: 153 GKLPAQPNHANVSAISLRSGKILDTPTTKEKK 184
BLAST of PI0014196 vs. ExPASy TrEMBL
Match:
A0A5A7VE49 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00600 PE=4 SV=1)
HSP 1 Score: 217.2 bits (552), Expect = 4.0e-53
Identity = 108/152 (71.05%), Postives = 123/152 (80.92%), Query Frame = 0
Query: 1 MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSGWRDNP 60
MTTLLTSFVQG PLKV KCGVCGLVGHPNDK P++IEDVN++R+YDPHGNTYNSGWRDNP
Sbjct: 33 MTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKYPEVIEDVNIVRRYDPHGNTYNSGWRDNP 92
Query: 61 NLRWGNDNQKPTQATSSSSN--------------------QEMKQQMTQLTTAISKLEGK 120
LRWGNDNQK QA S+SSN QEMKQQMTQLTTAISK++GK
Sbjct: 93 KLRWGNDNQKHIQAPSTSSNQGTNLEDIIKALAINTLSFQQEMKQQMTQLTTAISKMDGK 152
Query: 121 GKLPVQPDHANMSVISLRSGKILETPSSEEKR 133
GKLP QP+HAN+S ISLRSGKIL+TP+++EK+
Sbjct: 153 GKLPAQPNHANVSAISLRSGKILDTPTTKEKK 184
BLAST of PI0014196 vs. NCBI nr
Match:
ADN33993.1 (retrotransposon gag protein [Cucumis melo subsp. melo])
HSP 1 Score: 219.5 bits (558), Expect = 1.7e-53
Identity = 109/152 (71.71%), Postives = 124/152 (81.58%), Query Frame = 0
Query: 1 MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSGWRDNP 60
MTTLLTSFVQG PLKV KCGVC LVGHPNDKCP++IEDVN++RKYDP+GNTYNSGWRDNP
Sbjct: 57 MTTLLTSFVQGTPLKVTKCGVCRLVGHPNDKCPEVIEDVNIVRKYDPYGNTYNSGWRDNP 116
Query: 61 NLRWGNDNQKPTQATSSSSN--------------------QEMKQQMTQLTTAISKLEGK 120
NLRWGNDNQK TQA +SSN QEMKQQMTQLTTAISK++GK
Sbjct: 117 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGK 176
Query: 121 GKLPVQPDHANMSVISLRSGKILETPSSEEKR 133
GKLP QPD+AN+S ISLRSGKIL+TP+++EK+
Sbjct: 177 GKLPAQPDYANVSAISLRSGKILDTPTTKEKK 208
BLAST of PI0014196 vs. NCBI nr
Match:
KAA0047407.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 218.4 bits (555), Expect = 3.7e-53
Identity = 108/152 (71.05%), Postives = 124/152 (81.58%), Query Frame = 0
Query: 1 MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSGWRDNP 60
MTTLLTSFVQG PLKV KCGVCGLVGHPNDKCP++IEDVN++RKYDPHGNTYNSGWRDNP
Sbjct: 142 MTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWRDNP 201
Query: 61 NLRWGNDNQKPTQATSSSSN--------------------QEMKQQMTQLTTAISKLEGK 120
NLRWGNDNQK TQA S+SSN QEMKQQMTQLTTAISK++GK
Sbjct: 202 NLRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGK 261
Query: 121 GKLPVQPDHANMSVISLRSGKILETPSSEEKR 133
GKL Q ++AN+S +SLRSGKIL+TP+++EK+
Sbjct: 262 GKLSAQSNYANVSAVSLRSGKILDTPTTKEKK 293
BLAST of PI0014196 vs. NCBI nr
Match:
KAA0065554.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 217.2 bits (552), Expect = 8.3e-53
Identity = 108/152 (71.05%), Postives = 123/152 (80.92%), Query Frame = 0
Query: 1 MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSGWRDNP 60
MTTLLTSFVQG PLKV KCGVCGLVGHPNDK P++IEDVN++R+YDPHGNTYNSGWRDNP
Sbjct: 33 MTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKYPEVIEDVNIVRRYDPHGNTYNSGWRDNP 92
Query: 61 NLRWGNDNQKPTQATSSSSN--------------------QEMKQQMTQLTTAISKLEGK 120
LRWGNDNQK QA S+SSN QEMKQQMTQLTTAISK++GK
Sbjct: 93 KLRWGNDNQKHIQAPSTSSNQGTNLEDIIKALAINTLSFQQEMKQQMTQLTTAISKMDGK 152
Query: 121 GKLPVQPDHANMSVISLRSGKILETPSSEEKR 133
GKLP QP+HAN+S ISLRSGKIL+TP+++EK+
Sbjct: 153 GKLPAQPNHANVSAISLRSGKILDTPTTKEKK 184
BLAST of PI0014196 vs. NCBI nr
Match:
TYK29265.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 217.2 bits (552), Expect = 8.3e-53
Identity = 108/152 (71.05%), Postives = 123/152 (80.92%), Query Frame = 0
Query: 1 MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSGWRDNP 60
MTTLLTSFVQG PLKV KCGVCGLVGHPNDK P++IEDVN++R+YDPHGNTYNSGWRDNP
Sbjct: 33 MTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKYPEVIEDVNIVRRYDPHGNTYNSGWRDNP 92
Query: 61 NLRWGNDNQKPTQATSSSSN--------------------QEMKQQMTQLTTAISKLEGK 120
LRWGNDNQK QA S+SSN QEMKQQMTQLTTAISK++GK
Sbjct: 93 KLRWGNDNQKHIQAPSTSSNQGTNLEDIIKALAINTLSFQQEMKQQMTQLTTAISKMDGK 152
Query: 121 GKLPVQPDHANMSVISLRSGKILETPSSEEKR 133
GKLP QP+HAN+S ISLRSGKIL+TP+++EK+
Sbjct: 153 GKLPAQPNHANVSAISLRSGKILDTPTTKEKK 184
BLAST of PI0014196 vs. NCBI nr
Match:
TYK10613.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 217.2 bits (552), Expect = 8.3e-53
Identity = 106/152 (69.74%), Postives = 121/152 (79.61%), Query Frame = 0
Query: 1 MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSGWRDNP 60
MTTLLTSFVQG P KV KCGVCGLVGHPNDKCP++IED+N++R+YDPHGNTYN GWRD P
Sbjct: 186 MTTLLTSFVQGTPFKVTKCGVCGLVGHPNDKCPEVIEDINIVRRYDPHGNTYNLGWRDKP 245
Query: 61 NLRWGNDNQKPTQATSSSSN--------------------QEMKQQMTQLTTAISKLEGK 120
NLRWGND Q TQA S+SSN QEMKQQMTQLTTAISK++GK
Sbjct: 246 NLRWGNDKQNHTQAPSTSSNQGTNLEDIIKALTTNTLSFQQEMKQQMTQLTTAISKMDGK 305
Query: 121 GKLPVQPDHANMSVISLRSGKILETPSSEEKR 133
GKLP QPDHAN+S ISLRSGKIL+TP+++EK+
Sbjct: 306 GKLPAQPDHANVSAISLRSGKILDTPTTKEKK 337
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
E5GBZ4 | 8.1e-54 | 71.71 | Retrotransposon gag protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1 | [more] |
A0A5D3CRR8 | 1.8e-53 | 71.05 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
A0A5D3CFE7 | 4.0e-53 | 69.74 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
A0A5D3E1D2 | 4.0e-53 | 71.05 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
A0A5A7VE49 | 4.0e-53 | 71.05 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... | [more] |
Match Name | E-value | Identity | Description | |
ADN33993.1 | 1.7e-53 | 71.71 | retrotransposon gag protein [Cucumis melo subsp. melo] | [more] |
KAA0047407.1 | 3.7e-53 | 71.05 | retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotranspos... | [more] |
KAA0065554.1 | 8.3e-53 | 71.05 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
TYK29265.1 | 8.3e-53 | 71.05 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
TYK10613.1 | 8.3e-53 | 69.74 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |