PI0013851 (gene) Melon (PI 482460) v1

Overview


Name	PI0013851
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr08: 4576551 .. 4576907 (+)
RNA-Seq Expression	PI0013851
Synteny	PI0013851

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTAGTGGATTTGAAGAAGTCATCAATGAACAAGTCAATCTGAAGAACCTTGCGATAGAACATGAGAAGCAGATTAAAGACTTGGAGACAAAAGTTGACAACTTCCATCAAGCCCAAAAAGACCAGCTTGCATCTGAAGTGGCGAGCTTGAAAGAGCAAAATAAGGCGATAATAGGTCTCATCAAGAAAGCTTCATTGCGGTCTGACAGGCAATACAAATCAATGATGAACTACATCCACGCGGCAATCACGAGCCTCGTGCCTAAGCCTGCCATTCCGCTTGAATTTGAACAACCCCTTTTTGAAGATGAAGATGACGCCGCGGCTGGACCTTCCAAAGCGGCTATAAACTAA

mRNA sequence

ATGACTAGTGGATTTGAAGAAGTCATCAATGAACAAGTCAATCTGAAGAACCTTGCGATAGAACATGAGAAGCAGATTAAAGACTTGGAGACAAAAGTTGACAACTTCCATCAAGCCCAAAAAGACCAGCTTGCATCTGAAGTGGCGAGCTTGAAAGAGCAAAATAAGGCGATAATAGGTCTCATCAAGAAAGCTTCATTGCGGTCTGACAGGCAATACAAATCAATGATGAACTACATCCACGCGGCAATCACGAGCCTCGTGCCTAAGCCTGCCATTCCGCTTGAATTTGAACAACCCCTTTTTGAAGATGAAGATGACGCCGCGGCTGGACCTTCCAAAGCGGCTATAAACTAA

Coding sequence (CDS)

ATGACTAGTGGATTTGAAGAAGTCATCAATGAACAAGTCAATCTGAAGAACCTTGCGATAGAACATGAGAAGCAGATTAAAGACTTGGAGACAAAAGTTGACAACTTCCATCAAGCCCAAAAAGACCAGCTTGCATCTGAAGTGGCGAGCTTGAAAGAGCAAAATAAGGCGATAATAGGTCTCATCAAGAAAGCTTCATTGCGGTCTGACAGGCAATACAAATCAATGATGAACTACATCCACGCGGCAATCACGAGCCTCGTGCCTAAGCCTGCCATTCCGCTTGAATTTGAACAACCCCTTTTTGAAGATGAAGATGACGCCGCGGCTGGACCTTCCAAAGCGGCTATAAACTAA

Protein sequence

MTSGFEEVINEQVNLKNLAIEHEKQIKDLETKVDNFHQAQKDQLASEVASLKEQNKAIIGLIKKASLRSDRQYKSMMNYIHAAITSLVPKPAIPLEFEQPLFEDEDDAAAGPSKAAIN

Homology

[Close]

BLAST of PI0013851 vs. ExPASy TrEMBL
Match: A0A0A0KJB9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G049020 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.3e-04
Identity = 31/101 (30.69%), Postives = 61/101 (60.40%), Query Frame = 0


Query: 1   MTSGFEEVINEQVNLKNLAIEHEKQIKDLETKVDN---FHQAQKDQLASEV-------AS 60
           M+SGFE+ I  Q N + +  + +KQ++D + K+DN    HQ Q + L +++         
Sbjct: 61  MSSGFEDEIQCQSNFQEMHFQSQKQLEDFKLKLDNKNHHHQVQIEGLKAKMQELILQEQE 120

Query: 61  LKEQNKAIIGLIKKASLRSDRQYKSMMNYIHAAITSLVPKP 92
           LK QN+ I+ ++K+ +  +D Q+ S + Y+++++ S++P P
Sbjct: 121 LKVQNQVIMEMVKQTTRWNDVQFTSALRYLYSSMCSIIPTP 161

[Close]

BLAST of PI0013851 vs. ExPASy TrEMBL
Match: A0A5A7VKU1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00210 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.1e-04
Identity = 38/103 (36.89%), Postives = 56/103 (54.37%), Query Frame = 0


Query: 21  EHEKQIKDLETKVDNFHQAQKDQLASEVASLKEQNKA-------IIGLIKKASLRSDRQY 80
           +  KQ    +   D     + +++ S++A LK QN+A       +   IK+ASL ++ Q 
Sbjct: 109 QRSKQQDTTKESDDEDEYVKFEKIESDIAMLKTQNEAMQTQIQTMKTFIKQASLWTEMQC 168

Query: 81  KSMMNYIHAAITSLVPKPAIPLEFEQPLFEDEDD--AAAGPSK 115
           +++MNYIH  I SLVP P  P E E+PL E E    AA  PS+
Sbjct: 169 RTLMNYIHVTIVSLVPTPIFPPELEEPLTEVEPGPCAAVEPSE 211

[Close]

BLAST of PI0013851 vs. NCBI nr
Match: KGN49653.1 (hypothetical protein Csa_018510 [Cucumis sativus])

HSP 1 Score: 55.1 bits (131), Expect = 4.9e-04
Identity = 31/101 (30.69%), Postives = 61/101 (60.40%), Query Frame = 0


Query: 1   MTSGFEEVINEQVNLKNLAIEHEKQIKDLETKVDN---FHQAQKDQLASEV-------AS 60
           M+SGFE+ I  Q N + +  + +KQ++D + K+DN    HQ Q + L +++         
Sbjct: 61  MSSGFEDEIQCQSNFQEMHFQSQKQLEDFKLKLDNKNHHHQVQIEGLKAKMQELILQEQE 120

Query: 61  LKEQNKAIIGLIKKASLRSDRQYKSMMNYIHAAITSLVPKP 92
           LK QN+ I+ ++K+ +  +D Q+ S + Y+++++ S++P P
Sbjct: 121 LKVQNQVIMEMVKQTTRWNDVQFTSALRYLYSSMCSIIPTP 161

[Close]

BLAST of PI0013851 vs. NCBI nr
Match: KAA0067817.1 (hypothetical protein E6C27_scaffold2484G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 6.3e-04
Identity = 38/103 (36.89%), Postives = 56/103 (54.37%), Query Frame = 0


Query: 21  EHEKQIKDLETKVDNFHQAQKDQLASEVASLKEQNKA-------IIGLIKKASLRSDRQY 80
           +  KQ    +   D     + +++ S++A LK QN+A       +   IK+ASL ++ Q 
Sbjct: 109 QRSKQQDTTKESDDEDEYVKFEKIESDIAMLKTQNEAMQTQIQTMKTFIKQASLWTEMQC 168

Query: 81  KSMMNYIHAAITSLVPKPAIPLEFEQPLFEDEDD--AAAGPSK 115
           +++MNYIH  I SLVP P  P E E+PL E E    AA  PS+
Sbjct: 169 RTLMNYIHVTIVSLVPTPIFPPELEEPLTEVEPGPCAAVEPSE 211

The following BLAST results are available for this feature:

BLAST of PI0013851 vs.


Match Name	E-value	Identity	Description

BLAST of PI0013851 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJB9	2.3e-04	30.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G049020 PE=4 SV=1	[more]
A0A5A7VKU1	3.1e-04	36.89	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of PI0013851 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49653.1	4.9e-04	30.69	hypothetical protein Csa_018510 [Cucumis sativus]	[more]
KAA0067817.1	6.3e-04	36.89	hypothetical protein E6C27_scaffold2484G00210 [Cucumis melo var. makuwa]	[more]

BLAST of PI0013851 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 12..39

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0013851.1	PI0013851.1	mRNA