PI0013689 (gene) Melon (PI 482460) v1

Overview
NamePI0013689
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Locationchr01: 8160052 .. 8161313 (-)
RNA-Seq ExpressionPI0013689
SyntenyPI0013689
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATTCTAGGCATCCACTGGACACTCTCATCACAAGACCTCTGTGCACATGACAAACTCTCCCATAGGATTACTATAATCTTAGGATATCTCAGGTATAGACTAAAACATGTTTAACATTCTCATACACAAATCATTAAGTCAAACTAAACTAGCATGTTTGTATAAATCTCTTGCATCAACCAAGTCTCAAATTTGTAAATCTAGCTTTGCTAAAACATATCTTTAACTCAAATACTTTTGAAACTTAATATAGCATATATGGCAGAAATGGCCATGTGTGTGGCGAAGGCACCGAGAAGTTGCTCGCTTTAAAGTAGGATAGTAAAATATAATTCAAACTAAAAGATTAGATAAAAATCAACTTTTGACTTTAAGTATTTGGATCCCAAAAAGCGACCAAGTATGACAAATGAACCGAGAGGTTACTCGCCTTAATTTTGAAGTTAACAAATGCTTTGTATCGTCTAGCGCATTCATTATTACTTGCATTGTAAATTGACTAATTATTCTTGCATGACCATCGCCTAATAAATTGATTTCATGTTCGCATCATAATCATCGCCATATACGTCTTGCTATCGCCATCACATAAGTACTGTAAATATATAGAATCAAACATTGTCCATAATCATACTGTATAGATACTGTATGATATTAGAACGTGCAACTAAGTCCCTAAAAGAAATCAATTTCCCTGCATTGGACCCTGGCTTACCTAGGAAACCTTTCATTTCGCTTACACTTGGGCAAGCGAAAGGAAAACTTGTACGTACACGATGCATCATGTAATCTTGCAATGCATATGTTAAAATTTGACCTTTTAACGCATGATTCTAACCTAGACGCCTGATAAAATCGCATGCATATAACCTAAATGCAAAATTTACGAAGGATAAACAAACAAGCAAGTTTTTGGTGCCATTGTAAAAAAATTTGTAACTTCTATTTTGGACTTAATCTGTGCGCTAATCTTGTGCAGAAGTTCTGTTCAACTGAATCACGCATTTAAACCCGAAGAGCATGCGAACAAGTTTATGAGTGAAGGTGAACAACCTAAATTCGAACTTAACCCTAAGACAGAACGAACATTTCAGCGGAATAGAAGAAGAGGGAGGCAACAAAGAGCTAACAGAATGGCCAACAACAACAACAACGAAAATGTTCCTCCCAATCAAACTGCTCAAGAACAAAACCCCGTATATATGGCCAACGACCTAGATAGACCAATTAGGTCATATGCTTCACCAAATCTTTAG

mRNA sequence

ATGGAAATTCTAGGCATCCACTGGACACTCTCATCACAAGACCTCTGTGCACATGACAAACTCTCCCATAGGATTACTATAATCTTAGGATATCTCAGAAGTTCTGTTCAACTGAATCACGCATTTAAACCCGAAGAGCATGCGAACAAGTTTATGAGTGAAGGTGAACAACCTAAATTCGAACTTAACCCTAAGACAGAACGAACATTTCAGCGGAATAGAAGAAGAGGGAGGCAACAAAGAGCTAACAGAATGGCCAACAACAACAACAACGAAAATGTTCCTCCCAATCAAACTGCTCAAGAACAAAACCCCGTATATATGGCCAACGACCTAGATAGACCAATTAGGTCATATGCTTCACCAAATCTTTAG

Coding sequence (CDS)

ATGGAAATTCTAGGCATCCACTGGACACTCTCATCACAAGACCTCTGTGCACATGACAAACTCTCCCATAGGATTACTATAATCTTAGGATATCTCAGAAGTTCTGTTCAACTGAATCACGCATTTAAACCCGAAGAGCATGCGAACAAGTTTATGAGTGAAGGTGAACAACCTAAATTCGAACTTAACCCTAAGACAGAACGAACATTTCAGCGGAATAGAAGAAGAGGGAGGCAACAAAGAGCTAACAGAATGGCCAACAACAACAACAACGAAAATGTTCCTCCCAATCAAACTGCTCAAGAACAAAACCCCGTATATATGGCCAACGACCTAGATAGACCAATTAGGTCATATGCTTCACCAAATCTTTAG

Protein sequence

MEILGIHWTLSSQDLCAHDKLSHRITIILGYLRSSVQLNHAFKPEEHANKFMSEGEQPKFELNPKTERTFQRNRRRGRQQRANRMANNNNNENVPPNQTAQEQNPVYMANDLDRPIRSYASPNL
Homology
[Close]
BLAST of PI0013689 vs. ExPASy TrEMBL
Match: A0A5D3CAB5 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold796G00060 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 6.3e-08
Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = 0 

Query: 52  MSEGEQPKFELNPKTERTFQRNRR-RGRQQRANRMANNNNNENVPPNQTAQEQNPVYMAN 111
           MSEGEQPKF ++ + ER FQRNRR R R+QR N+ +N+ NN+  P NQ  Q  N  Y+A+
Sbjct: 1   MSEGEQPKFVIDLEIERIFQRNRRQRKRRQRTNK-SNSQNNQEAPANQAIQVVNLTYLAH 60

Query: 112 DLDRPIRSYASPNL 125
           + DRPIRS  SPNL
Sbjct: 61  NRDRPIRSNTSPNL 73

[Close]
BLAST of PI0013689 vs. ExPASy TrEMBL
Match: A0A5A7UXZ2 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00610 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 6.3e-08
Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = 0 

Query: 52  MSEGEQPKFELNPKTERTFQRNRR-RGRQQRANRMANNNNNENVPPNQTAQEQNPVYMAN 111
           MSEGEQPKF ++ + ER FQRNRR R R+QR N+ +N+ NN+  P NQ  Q  N  Y+A+
Sbjct: 1   MSEGEQPKFVIDLEIERIFQRNRRQRKRRQRTNK-SNSQNNQEAPANQAIQVVNLTYLAH 60

Query: 112 DLDRPIRSYASPNL 125
           + DRPIRS  SPNL
Sbjct: 61  NRDRPIRSNTSPNL 73

[Close]
BLAST of PI0013689 vs. ExPASy TrEMBL
Match: A0A5A7V2U7 (Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001950 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.4e-04
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 0 

Query: 87  NNNNNENVPPNQTAQEQNPVYMANDLDRPIRSYASPNL 125
           NN NN+ +P NQ AQ  NP Y+A+D DRPIRSYASPNL
Sbjct: 2   NNQNNQGIPANQAAQGANPTYLADDRDRPIRSYASPNL 39

[Close]
BLAST of PI0013689 vs. ExPASy TrEMBL
Match: A0A5A7UDN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00900 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 9.4e-04
Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 0 

Query: 90  NNENVPPNQTAQEQNPVYMANDLDRPIRSYASPNL 125
           NN+N P  Q  QEQNP Y+A+DLD+PI+SYASPNL
Sbjct: 2   NNQNNPAYQNTQEQNPAYLAHDLDKPIKSYASPNL 36

[Close]
BLAST of PI0013689 vs. NCBI nr
Match: TYK08803.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-07
Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = 0 

Query: 52  MSEGEQPKFELNPKTERTFQRNRR-RGRQQRANRMANNNNNENVPPNQTAQEQNPVYMAN 111
           MSEGEQPKF ++ + ER FQRNRR R R+QR N+ +N+ NN+  P NQ  Q  N  Y+A+
Sbjct: 1   MSEGEQPKFVIDLEIERIFQRNRRQRKRRQRTNK-SNSQNNQEAPANQAIQVVNLTYLAH 60

Query: 112 DLDRPIRSYASPNL 125
           + DRPIRS  SPNL
Sbjct: 61  NRDRPIRSNTSPNL 73

[Close]
BLAST of PI0013689 vs. NCBI nr
Match: KAA0060833.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-07
Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = 0 

Query: 52  MSEGEQPKFELNPKTERTFQRNRR-RGRQQRANRMANNNNNENVPPNQTAQEQNPVYMAN 111
           MSEGEQPKF ++ + ER FQRNRR R R+QR N+ +N+ NN+  P NQ  Q  N  Y+A+
Sbjct: 1   MSEGEQPKFVIDLEIERIFQRNRRQRKRRQRTNK-SNSQNNQEAPANQAIQVVNLTYLAH 60

Query: 112 DLDRPIRSYASPNL 125
           + DRPIRS  SPNL
Sbjct: 61  NRDRPIRSNTSPNL 73

[Close]
BLAST of PI0013689 vs. NCBI nr
Match: KAA0062403.1 (putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK26578.1 putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 3.0e-04
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 0 

Query: 87  NNNNNENVPPNQTAQEQNPVYMANDLDRPIRSYASPNL 125
           NN NN+ +P NQ AQ  NP Y+A+D DRPIRSYASPNL
Sbjct: 2   NNQNNQGIPANQAAQGANPTYLADDRDRPIRSYASPNL 39

The following BLAST results are available for this feature:
BLAST of PI0013689 vs.
Match NameE-valueIdentityDescription
BLAST of PI0013689 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CAB56.3e-0856.76Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak... [more]
A0A5A7UXZ26.3e-0856.76Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak... [more]
A0A5A7V2U71.4e-0468.42Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=... [more]
A0A5A7UDN89.4e-0468.57Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of PI0013689 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK08803.11.3e-0756.76Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw... [more]
KAA0060833.11.3e-0756.76Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw... [more]
KAA0062403.13.0e-0468.42putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK... [more]
BLAST of PI0013689 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..109
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0013689.1PI0013689.1mRNA