Homology
BLAST of PI0013552 vs. ExPASy Swiss-Prot
Match:
Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)
HSP 1 Score: 58.5 bits (140), Expect = 1.4e-07
Identity = 80/259 (30.89%), Postives = 109/259 (42.08%), Query Frame = 0
Query: 11 FGDTTFTKVFVGGLAWETPTDQMRTYLNNLATFLKLLLSLIKTPPNLKDMDSRDLFKLLQ 70
FGDT TKVFVGGLAW+T + M + L+ ++ + D +R
Sbjct: 11 FGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVI--------ISDKLTRRSKGYGF 70
Query: 71 VTFRDPESARRACANPNPIIDGRRANCNIAAL-GRPRPSPPRGRGQSSVNPYQGSTMQAQ 130
VTF+D ++A RAC + PII+GRRANCN+A+L GR R SP + +P QG +
Sbjct: 71 VTFKDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSP------TMTSPQQGPKNGNR 130
Query: 131 ATPSYGG------VPSPLNQPPIPPPPPPAPPVVYSPYGYPA--------YSPDYGY--H 190
ATP + G PS A P YGYP+ ++ GY
Sbjct: 131 ATPPHVGNHSQWYYPSGFTNQQHQQQNHQAVPF----YGYPSAYVAPNMTFNQKVGYVGG 190
Query: 191 HHHQAVYNPQVQQPQMYQQTPYYYGYSSRGTTFPNPSQSHHHPRLLLPPSYVYYP----- 244
+ Y QPQ Q YY+ + G + S + P Y YP
Sbjct: 191 TYMNGYYAQMQPQPQSQPQPQYYHHHMYGGGRVMVGAASP------MVPFYTVYPYHQSQ 245
BLAST of PI0013552 vs. ExPASy Swiss-Prot
Match:
Q9H0Z9 (RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2)
HSP 1 Score: 53.1 bits (126), Expect = 5.9e-06
Identity = 63/188 (33.51%), Postives = 80/188 (42.55%), Query Frame = 0
Query: 13 DTTFTKVFVGGLAWETPTDQMRTYLNNLATFLKLLLSLIKTPPNLKDMDSRDLFKLLQVT 72
DTTFTK+FVGGL + T +R Y + ++ + D + VT
Sbjct: 30 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVV--------ITDRQTGKSRGYGFVT 89
Query: 73 FRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQATP 132
D +A RAC +PNPIIDGR+AN N+A LG S G ++ Q Q T
Sbjct: 90 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRSLQTG---FAIGVQQLHPTLIQRT- 149
Query: 133 SYGGVPSPLNQPPIPPPP---PPAP-PVVYSPY-GYPAYSPDYGYHHHHQAVYNPQVQQP 192
YG P + P I P P AP P + SPY Y SP Y + P
Sbjct: 150 -YGLTPHYIYPPAIVQPSVVIPAAPVPSLSSPYIEYTPASPAYAQY------------PP 192
Query: 193 QMYQQTPY 196
Y Q PY
Sbjct: 210 ATYDQYPY 192
BLAST of PI0013552 vs. ExPASy Swiss-Prot
Match:
Q62176 (RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2)
HSP 1 Score: 51.6 bits (122), Expect = 1.7e-05
Identity = 62/188 (32.98%), Postives = 78/188 (41.49%), Query Frame = 0
Query: 13 DTTFTKVFVGGLAWETPTDQMRTYLNNLATFLKLLLSLIKTPPNLKDMDSRDLFKLLQVT 72
DTTFTK+FVGGL + T +R Y + ++ + D + VT
Sbjct: 28 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVV--------ITDRQTGKSRGYGFVT 87
Query: 73 FRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQATP 132
D +A RAC +PNPIIDGR+AN N+A LG S G +V Q Q T
Sbjct: 88 MADRAAADRACKDPNPIIDGRKANVNLAYLGAKPRSLQTG---FAVGVQQLHPTLIQRT- 147
Query: 133 SYGGVPSPLNQPPIPPP----PPPAPPVVYSPY-GYPAYSPDYGYHHHHQAVYNPQVQQP 192
YG P + P I P P P + SPY Y SP Y + P
Sbjct: 148 -YGLTPHYIYPPAIVQPSVVIPATPVPSLSSPYLEYTPASPAYAQY------------PP 190
Query: 193 QMYQQTPY 196
Y Q PY
Sbjct: 208 ATYDQYPY 190
BLAST of PI0013552 vs. ExPASy Swiss-Prot
Match:
Q9BX46 (RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1)
HSP 1 Score: 49.3 bits (116), Expect = 8.5e-05
Identity = 51/153 (33.33%), Postives = 70/153 (45.75%), Query Frame = 0
Query: 13 DTTFTKVFVGGLAWETPTDQMRTYLNNLATFLKLLLSLIKTPPNLKDMDSRDLFKLLQVT 72
DTT+TK+FVGGL + T +R Y + I+ + D + VT
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFE--------VFGEIEEAVVITDRQTGKSRGYGFVT 66
Query: 73 FRDPESARRACANPNPIIDGRRANCNIAALG-RPR-PSPPRGRGQSSVNPYQGSTMQAQA 132
D +A RAC +PNPIIDGR+AN N+A LG +PR P G ++P +
Sbjct: 67 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLHP--ALIQRPFG 126
Query: 133 TPSYGGVPSPLNQP--PIPPPPPPAPPVVYSPY 162
P++ P QP IP P A +PY
Sbjct: 127 IPAHYVYPQAFVQPGVVIPHVQPTAAAASTTPY 149
BLAST of PI0013552 vs. ExPASy Swiss-Prot
Match:
D3Z4I3 (RNA-binding protein 24 OS=Mus musculus OX=10090 GN=Rbm24 PE=1 SV=1)
HSP 1 Score: 48.9 bits (115), Expect = 1.1e-04
Identity = 51/153 (33.33%), Postives = 70/153 (45.75%), Query Frame = 0
Query: 13 DTTFTKVFVGGLAWETPTDQMRTYLNNLATFLKLLLSLIKTPPNLKDMDSRDLFKLLQVT 72
DTT+TK+FVGGL + T +R Y + I+ + D + VT
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFE--------VFGDIEEAVVITDRQTGKSRGYGFVT 66
Query: 73 FRDPESARRACANPNPIIDGRRANCNIAALG-RPR-PSPPRGRGQSSVNPYQGSTMQAQA 132
D +A RAC +PNPIIDGR+AN N+A LG +PR P G ++P +
Sbjct: 67 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLHP--ALIQRPFG 126
Query: 133 TPSYGGVPSPLNQP--PIPPPPPPAPPVVYSPY 162
P++ P QP IP P A +PY
Sbjct: 127 IPAHYVYPQAFVQPGVVIPHVQPTAAAASTTPY 149
BLAST of PI0013552 vs. ExPASy TrEMBL
Match:
A0A0A0LGV2 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G889750 PE=4 SV=1)
HSP 1 Score: 471.5 bits (1212), Expect = 2.5e-129
Identity = 247/289 (85.47%), Postives = 252/289 (87.20%), Query Frame = 0
Query: 1 MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYLNNLATFLKLLLSLIKTPPNLKDM 60
MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQM+TY L+ ++ K K
Sbjct: 1 MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGY 60
Query: 61 DSRDLFKLLQVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNP 120
VTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNP
Sbjct: 61 GF--------VTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNP 120
Query: 121 YQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVY 180
YQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVY
Sbjct: 121 YQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVY 180
Query: 181 NPQVQQPQMYQQTPYYYGYSSRGTTFPNPSQSHHHPRLLLPPSYVYY--PPPPPQFEASS 240
NPQVQQPQMYQQTPYYYGYSSRGTTFPNPSQSH HPRLLLPPSYVYY PPPPPQFE SS
Sbjct: 181 NPQVQQPQMYQQTPYYYGYSSRGTTFPNPSQSHQHPRLLLPPSYVYYPPPPPPPQFEPSS 240
Query: 241 FNYPPPHQPQPQPQIIRHRFSSTDSQTSQQTPTEAEAGGVTSD-QSPTT 287
FNYP PQPQPQIIRHRFSSTDSQTSQQTPTEAEAGGVTSD QSPT+
Sbjct: 241 FNYP----PQPQPQIIRHRFSSTDSQTSQQTPTEAEAGGVTSDIQSPTS 277
BLAST of PI0013552 vs. ExPASy TrEMBL
Match:
A0A6J1DIJ5 (RNA-binding protein 38 OS=Momordica charantia OX=3673 GN=LOC111020331 PE=4 SV=1)
HSP 1 Score: 335.5 bits (859), Expect = 2.2e-88
Identity = 195/297 (65.66%), Postives = 213/297 (71.72%), Query Frame = 0
Query: 4 YPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYLNNLATFLKLLLSLIKTPPNLKDMDSR 63
Y HYRSQFGDTTFTKVFVGGLAWETPT++MR Y L+ ++ K K
Sbjct: 3 YAHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTAKSKGYGF- 62
Query: 64 DLFKLLQVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQG 123
VTFRDPESARRACANPNP+IDGRRANCNIAALGRPRPSPPRGR Q +NPYQG
Sbjct: 63 -------VTFRDPESARRACANPNPVIDGRRANCNIAALGRPRPSPPRGRAQGGINPYQG 122
Query: 124 STMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQ 183
STM QATPSY GVP+PLNQPP+PP PPP PPVVYSPYGYP+YSPDYGY H QAVYNPQ
Sbjct: 123 STM--QATPSYSGVPAPLNQPPLPPAPPPPPPVVYSPYGYPSYSPDYGY--HPQAVYNPQ 182
Query: 184 VQQPQMYQQTPYYYGYS--SRGTTFPN-PSQSHHHPRLLLPPSYVYYPPPPP----QFEA 243
VQQPQ Y Q+PY YGYS S TF N P QSHHH +PPSY+YYP P QFE
Sbjct: 183 VQQPQYYHQSPYLYGYSVQSPRATFSNAPPQSHHH---RVPPSYLYYPAAAPSPHAQFEP 242
Query: 244 SS--FNYPPPHQPQPQPQIIRHRFSSTDSQTSQQTPTEAEA-----GGVTSDQSPTT 287
SS NYPP P ++RHRFSSTDSQTSQQTPTEAEA G + +SP+T
Sbjct: 243 SSSFSNYPP-------PPLLRHRFSSTDSQTSQQTPTEAEAEAEAEAGAVTSESPST 277
BLAST of PI0013552 vs. ExPASy TrEMBL
Match:
A0A6J1IJV9 (RNA-binding protein 38-like OS=Cucurbita maxima OX=3661 GN=LOC111475419 PE=4 SV=1)
HSP 1 Score: 310.5 bits (794), Expect = 7.5e-81
Identity = 185/290 (63.79%), Postives = 201/290 (69.31%), Query Frame = 0
Query: 4 YPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYLNNLATFLKLLLSLIKTPPNLKDMDSR 63
YPHYRSQFGDTT TKVFVGGLAWETPTD+MR Y L+ ++ K K
Sbjct: 3 YPHYRSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGF- 62
Query: 64 DLFKLLQVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQG 123
VTFRD ESARRACANPNP+IDGRRANCNIAA+GRPRPSPPRGRGQ VNPYQG
Sbjct: 63 -------VTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQG 122
Query: 124 STMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYH----HHHQAV 183
STM QA PSY GVP PLNQPP+PPP PPVVYSPYGYP Y+PDYGYH HH Q V
Sbjct: 123 STM--QAAPSYSGVPPPLNQPPLPPP----PPVVYSPYGYPTYTPDYGYHQHYQHHQQPV 182
Query: 184 YNPQVQQPQMYQQTPYYYGYS--SRGTTFPNPSQSHHHPRLLLPPSYVYYPPP--PPQFE 243
YN PY+YGYS S FP PSQS H PR+ +PP YVYYPPP Q+E
Sbjct: 183 YN------------PYFYGYSVQSPRGAFPIPSQS-HQPRVAVPP-YVYYPPPAAAAQYE 242
Query: 244 ASSFNYPPPHQPQPQPQIIRHRFSSTDSQTSQQTPTEAEAGGVTSDQSPT 286
SF+YPP P P +IRHRF+STDSQTSQQTPTEAEA VTS+ S T
Sbjct: 243 -GSFSYPP-----PPPPLIRHRFASTDSQTSQQTPTEAEAEAVTSETSTT 258
BLAST of PI0013552 vs. ExPASy TrEMBL
Match:
A0A6J1F8X9 (RNA-binding protein 38-like OS=Cucurbita moschata OX=3662 GN=LOC111443164 PE=4 SV=1)
HSP 1 Score: 307.8 bits (787), Expect = 4.9e-80
Identity = 183/289 (63.32%), Postives = 199/289 (68.86%), Query Frame = 0
Query: 4 YPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYLNNLATFLKLLLSLIKTPPNLKDMDSR 63
YPHYRSQFGDTTFTKVFVGGLAWETPTD+MR Y L+ ++ K K
Sbjct: 3 YPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGF- 62
Query: 64 DLFKLLQVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQG 123
VTFRD ESARRACANPNP+IDGRRANCNIAA+GRPRPSPPRGRGQ VNPYQG
Sbjct: 63 -------VTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQG 122
Query: 124 STMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQ 183
STM QA PSY GVP PLNQPP+PPPP PPVVYSPYGYP Y+ DYGYHH H
Sbjct: 123 STM--QAAPSYSGVPPPLNQPPLPPPP---PPVVYSPYGYPTYTTDYGYHHQH------- 182
Query: 184 VQQPQMYQQTPYYYGYS--SRGTTFPNPSQSHHHPRLLLPPSYVYYPPP-----PPQFEA 243
Q Q PY+YGYS S FP+PSQS H PR+ +PP YVYYPPP QFE
Sbjct: 183 YQHHQQPVYNPYFYGYSLQSPRGAFPSPSQS-HQPRVAVPP-YVYYPPPAAAAAAAQFE- 242
Query: 244 SSFNYPPPHQPQPQPQIIRHRFSSTDSQTSQQTPTEAEAGGVTSDQSPT 286
SF+YPP P +IRHRF+STDSQTSQQTP EAEA VTS+ S T
Sbjct: 243 GSFSYPP-------PPLIRHRFASTDSQTSQQTPPEAEAEAVTSETSTT 261
BLAST of PI0013552 vs. ExPASy TrEMBL
Match:
A0A1S4E5K3 (leucine-rich repeat extensin-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103503700 PE=4 SV=1)
HSP 1 Score: 285.8 bits (730), Expect = 2.0e-73
Identity = 152/164 (92.68%), Postives = 153/164 (93.29%), Query Frame = 0
Query: 126 MQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQ 185
MQAQA+PSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQ
Sbjct: 1 MQAQASPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQ 60
Query: 186 QPQMYQQTPYYYGYSSRGTTFPNPSQSHHHPRLLL-PPSYVYY--PPPPPQFEASSFNYP 245
QPQMYQQTPYYYGYSSRGTTFPNPSQSHHHPRLLL PPSYVYY PPPPPQFEASSFNYP
Sbjct: 61 QPQMYQQTPYYYGYSSRGTTFPNPSQSHHHPRLLLPPPSYVYYSPPPPPPQFEASSFNYP 120
Query: 246 PPHQPQPQPQIIRHRFSSTDSQTSQQTPTEAEAGGVTSDQSPTT 287
PQ QPQIIRHRFSSTDSQTSQQT TEAE GGV SDQSPTT
Sbjct: 121 ----PQAQPQIIRHRFSSTDSQTSQQTTTEAEVGGVVSDQSPTT 160
BLAST of PI0013552 vs. NCBI nr
Match:
XP_004136431.1 (RNA-binding protein 38 [Cucumis sativus] >KGN60219.1 hypothetical protein Csa_001640 [Cucumis sativus])
HSP 1 Score: 471.5 bits (1212), Expect = 5.3e-129
Identity = 247/289 (85.47%), Postives = 252/289 (87.20%), Query Frame = 0
Query: 1 MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYLNNLATFLKLLLSLIKTPPNLKDM 60
MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQM+TY L+ ++ K K
Sbjct: 1 MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGY 60
Query: 61 DSRDLFKLLQVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNP 120
VTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNP
Sbjct: 61 GF--------VTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNP 120
Query: 121 YQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVY 180
YQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVY
Sbjct: 121 YQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVY 180
Query: 181 NPQVQQPQMYQQTPYYYGYSSRGTTFPNPSQSHHHPRLLLPPSYVYY--PPPPPQFEASS 240
NPQVQQPQMYQQTPYYYGYSSRGTTFPNPSQSH HPRLLLPPSYVYY PPPPPQFE SS
Sbjct: 181 NPQVQQPQMYQQTPYYYGYSSRGTTFPNPSQSHQHPRLLLPPSYVYYPPPPPPPQFEPSS 240
Query: 241 FNYPPPHQPQPQPQIIRHRFSSTDSQTSQQTPTEAEAGGVTSD-QSPTT 287
FNYP PQPQPQIIRHRFSSTDSQTSQQTPTEAEAGGVTSD QSPT+
Sbjct: 241 FNYP----PQPQPQIIRHRFSSTDSQTSQQTPTEAEAGGVTSDIQSPTS 277
BLAST of PI0013552 vs. NCBI nr
Match:
XP_038897135.1 (RNA-binding protein 38 [Benincasa hispida])
HSP 1 Score: 401.0 bits (1029), Expect = 8.7e-108
Identity = 219/292 (75.00%), Postives = 231/292 (79.11%), Query Frame = 0
Query: 4 YPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYLNNLATFLKLLLSLIKTPPNLKDMDSR 63
YPHYRSQFGDTTFTKVFVGGLAWETPTD MRTY L+ ++ K K
Sbjct: 3 YPHYRSQFGDTTFTKVFVGGLAWETPTDLMRTYFEQFGDILEAVIITDKNTSKSKGYGF- 62
Query: 64 DLFKLLQVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQG 123
VTFRD ESARRACAN NPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQG
Sbjct: 63 -------VTFRDAESARRACANANPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQG 122
Query: 124 STMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQ 183
STMQ QATPSYGGVPSPLNQPP+PPPPPP PP+VYSPYGYPAYSPDYGY HHQAVYNPQ
Sbjct: 123 STMQVQATPSYGGVPSPLNQPPLPPPPPPPPPIVYSPYGYPAYSPDYGY-QHHQAVYNPQ 182
Query: 184 VQQPQMYQQTPYYYGYS--SRGTTFPNPSQSHHHPRLLLPPSYVYYPPPPP-------QF 243
VQQPQ+YQQ+PY+YGYS S TF NPSQS HHPRL+LPPSYVYYPPP P QF
Sbjct: 183 VQQPQIYQQSPYFYGYSLQSPRGTFHNPSQS-HHPRLVLPPSYVYYPPPSPTAAAAAAQF 242
Query: 244 EASSFNYPPPHQPQPQPQIIRHRFSSTDSQTSQQTPTEAEAGGVTSDQSPTT 287
EA+S NYPP +IRHRFSSTDSQTSQQTPTE EAGGVTSDQSPT+
Sbjct: 243 EAASINYPP---------LIRHRFSSTDSQTSQQTPTEGEAGGVTSDQSPTS 275
BLAST of PI0013552 vs. NCBI nr
Match:
XP_022152706.1 (RNA-binding protein 38 [Momordica charantia])
HSP 1 Score: 335.5 bits (859), Expect = 4.5e-88
Identity = 195/297 (65.66%), Postives = 213/297 (71.72%), Query Frame = 0
Query: 4 YPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYLNNLATFLKLLLSLIKTPPNLKDMDSR 63
Y HYRSQFGDTTFTKVFVGGLAWETPT++MR Y L+ ++ K K
Sbjct: 3 YAHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTAKSKGYGF- 62
Query: 64 DLFKLLQVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQG 123
VTFRDPESARRACANPNP+IDGRRANCNIAALGRPRPSPPRGR Q +NPYQG
Sbjct: 63 -------VTFRDPESARRACANPNPVIDGRRANCNIAALGRPRPSPPRGRAQGGINPYQG 122
Query: 124 STMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQ 183
STM QATPSY GVP+PLNQPP+PP PPP PPVVYSPYGYP+YSPDYGY H QAVYNPQ
Sbjct: 123 STM--QATPSYSGVPAPLNQPPLPPAPPPPPPVVYSPYGYPSYSPDYGY--HPQAVYNPQ 182
Query: 184 VQQPQMYQQTPYYYGYS--SRGTTFPN-PSQSHHHPRLLLPPSYVYYPPPPP----QFEA 243
VQQPQ Y Q+PY YGYS S TF N P QSHHH +PPSY+YYP P QFE
Sbjct: 183 VQQPQYYHQSPYLYGYSVQSPRATFSNAPPQSHHH---RVPPSYLYYPAAAPSPHAQFEP 242
Query: 244 SS--FNYPPPHQPQPQPQIIRHRFSSTDSQTSQQTPTEAEA-----GGVTSDQSPTT 287
SS NYPP P ++RHRFSSTDSQTSQQTPTEAEA G + +SP+T
Sbjct: 243 SSSFSNYPP-------PPLLRHRFSSTDSQTSQQTPTEAEAEAEAEAGAVTSESPST 277
BLAST of PI0013552 vs. NCBI nr
Match:
KAG6591668.1 (putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 310.8 bits (795), Expect = 1.2e-80
Identity = 184/289 (63.67%), Postives = 200/289 (69.20%), Query Frame = 0
Query: 4 YPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYLNNLATFLKLLLSLIKTPPNLKDMDSR 63
YPHYRSQFGDTTFTKVFVGGLAWETPTD+MR Y L+ ++ K K
Sbjct: 3 YPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGF- 62
Query: 64 DLFKLLQVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQG 123
VTFRD ESARRACANPNP+IDGRRANCNIAA+GRPRPSPPRGRGQ VNPYQG
Sbjct: 63 -------VTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQG 122
Query: 124 STMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQ 183
STM QA PSY GVP PLNQPP+PPPP PPVVYSPYGYP Y+PDYGYHH H
Sbjct: 123 STM--QAAPSYSGVPPPLNQPPLPPPP---PPVVYSPYGYPTYTPDYGYHHQH------- 182
Query: 184 VQQPQMYQQTPYYYGYS--SRGTTFPNPSQSHHHPRLLLPPSYVYYPPP-----PPQFEA 243
Q Q PY+YGYS S FP+PSQS H PR+ +PP YVYYPPP QFE
Sbjct: 183 YQHHQQPVYNPYFYGYSLQSPRGAFPSPSQS-HQPRVAVPP-YVYYPPPAAAAAAAQFE- 242
Query: 244 SSFNYPPPHQPQPQPQIIRHRFSSTDSQTSQQTPTEAEAGGVTSDQSPT 286
SF+YPPP +IRHRF+STDSQTSQQTP EAEA VTS+ S T
Sbjct: 243 GSFSYPPP--------LIRHRFASTDSQTSQQTPPEAEAEAVTSETSTT 260
BLAST of PI0013552 vs. NCBI nr
Match:
XP_022975652.1 (RNA-binding protein 38-like [Cucurbita maxima] >XP_022975653.1 RNA-binding protein 38-like [Cucurbita maxima])
HSP 1 Score: 310.5 bits (794), Expect = 1.6e-80
Identity = 185/290 (63.79%), Postives = 201/290 (69.31%), Query Frame = 0
Query: 4 YPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYLNNLATFLKLLLSLIKTPPNLKDMDSR 63
YPHYRSQFGDTT TKVFVGGLAWETPTD+MR Y L+ ++ K K
Sbjct: 3 YPHYRSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGF- 62
Query: 64 DLFKLLQVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQG 123
VTFRD ESARRACANPNP+IDGRRANCNIAA+GRPRPSPPRGRGQ VNPYQG
Sbjct: 63 -------VTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQG 122
Query: 124 STMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYH----HHHQAV 183
STM QA PSY GVP PLNQPP+PPP PPVVYSPYGYP Y+PDYGYH HH Q V
Sbjct: 123 STM--QAAPSYSGVPPPLNQPPLPPP----PPVVYSPYGYPTYTPDYGYHQHYQHHQQPV 182
Query: 184 YNPQVQQPQMYQQTPYYYGYS--SRGTTFPNPSQSHHHPRLLLPPSYVYYPPP--PPQFE 243
YN PY+YGYS S FP PSQS H PR+ +PP YVYYPPP Q+E
Sbjct: 183 YN------------PYFYGYSVQSPRGAFPIPSQS-HQPRVAVPP-YVYYPPPAAAAQYE 242
Query: 244 ASSFNYPPPHQPQPQPQIIRHRFSSTDSQTSQQTPTEAEAGGVTSDQSPT 286
SF+YPP P P +IRHRF+STDSQTSQQTPTEAEA VTS+ S T
Sbjct: 243 -GSFSYPP-----PPPPLIRHRFASTDSQTSQQTPTEAEAEAVTSETSTT 258
BLAST of PI0013552 vs. TAIR 10
Match:
AT1G78260.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )
HSP 1 Score: 165.6 bits (418), Expect = 5.8e-41
Identity = 121/279 (43.37%), Postives = 149/279 (53.41%), Query Frame = 0
Query: 1 MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYLNNLATFLKLLLSLIKTPPNLKDM 60
M+ +YRS FGDTT+TKVFVGGLAWETPTD+MR Y L+ ++ K K
Sbjct: 1 MSQTSYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGY 60
Query: 61 DSRDLFKLLQVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNP 120
VTFR+ +SA RA A+PNP+IDGR+ANCNIA+ GRPRPSPPRGRGQ+
Sbjct: 61 GF--------VTFRESDSATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQT---- 120
Query: 121 YQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPD-YGYHHHHQAV 180
GS Q Q+ G PS P PP AP ++Y YGY Y+PD +GY HQA+
Sbjct: 121 --GSPSQYQS-----GGPSTYTGMAAPLPPAAAPQLMYPSYGY-TYNPDQFGY---HQAL 180
Query: 181 YNPQVQQPQMYQQ---------------------TPYYYGYSSRGTTFP----------- 240
YN Q+QQ Q YQQ +PYYYGYS + P
Sbjct: 181 YNTQLQQAQYYQQQQQLYGGGATSPSSSGATIMPSPYYYGYSLQAPRVPYQHHHHLPQPY 240
Query: 241 NPSQSHHHPRLLLPPSYVYYPPPPPQFEASSFNYPPPHQ 247
NP Q HHH R PS++ YP S+ ++ PP Q
Sbjct: 241 NP-QQHHHQR-FSSPSFLVYP--------SNSSFAPPLQ 246
BLAST of PI0013552 vs. TAIR 10
Match:
AT1G78260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )
HSP 1 Score: 160.6 bits (405), Expect = 1.9e-39
Identity = 131/319 (41.07%), Postives = 162/319 (50.78%), Query Frame = 0
Query: 1 MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYLNNLATFLKLLLSLIKTPPNLKDM 60
M+ +YRS FGDTT+TKVFVGGLAWETPTD+MR Y L+ ++ K K
Sbjct: 1 MSQTSYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGY 60
Query: 61 DSRDLFKLLQVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNP 120
VTFR+ +SA RA A+PNP+IDGR+ANCNIA+ GRPRPSPPRGRGQ+
Sbjct: 61 GF--------VTFRESDSATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQT---- 120
Query: 121 YQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPD-YGYHHHHQAV 180
GS Q Q+ G PS P PP AP ++Y YGY Y+PD +GY HQA+
Sbjct: 121 --GSPSQYQS-----GGPSTYTGMAAPLPPAAAPQLMYPSYGY-TYNPDQFGY---HQAL 180
Query: 181 YNPQVQQPQMYQQ---------------------TPYYYGYSSRGTTFP----------- 240
YN Q+QQ Q YQQ +PYYYGYS + P
Sbjct: 181 YNTQLQQAQYYQQQQQLYGGGATSPSSSGATIMPSPYYYGYSLQAPRVPYQHHHHLPQPY 240
Query: 241 NPSQSHHHPRLLLPPSYVYYPPPPPQFEASSFNYPPPHQPQPQPQIIRHRFSSTDSQTSQ 287
NP Q HHH R PS++ YP S+ ++ PP Q SST+S+
Sbjct: 241 NP-QQHHHQR-FSSPSFLVYP--------SNSSFAPPLQGVLS--------SSTESEAVP 278
BLAST of PI0013552 vs. TAIR 10
Match:
AT1G22330.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )
HSP 1 Score: 153.7 bits (387), Expect = 2.3e-37
Identity = 119/286 (41.61%), Postives = 149/286 (52.10%), Query Frame = 0
Query: 1 MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYLNNLATFLKLLLSLIKTPPNLKDM 60
M+N +YRS FGDTT TKVFVGGLAWETPTD+MR Y + L+ ++ K K
Sbjct: 1 MSNTSYYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGY 60
Query: 61 DSRDLFKLLQVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQ-SSVN 120
VTFRD +SA RA A+PNP+IDGR+ANCNIA+ GRPRPS PRGRGQ S +
Sbjct: 61 GF--------VTFRDSDSATRAVADPNPVIDGRKANCNIASFGRPRPSTPRGRGQGGSPS 120
Query: 121 PYQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAV 180
YQG SY G+ +P+ Q A ++Y YGY Y+ +YGY HQA+
Sbjct: 121 QYQGG-----GQSSYTGMAAPVQQ-------AAAAQLMYPSYGY-TYNSEYGY---HQAL 180
Query: 181 YNPQVQQPQMYQQTPYYYGYSSRGTTFPNPSQSHHHPRLLLPPSYVYYPPPPPQFEASSF 240
YN Q+QQ Q YQQ Y G G T P+ S ++P Y Y P P+
Sbjct: 181 YNAQLQQAQYYQQQMYGGG----GATSPSSSN-------IMPSPYYYLQAPSPRPYLHHQ 240
Query: 241 NYPPPHQPQPQPQIIRHRFSSTDSQTSQQTPTEAEA-GGVTSDQSP 285
+ H Q Q Q + R S S + EA V + Q P
Sbjct: 241 QHYQYHHHQQQQQQQQQRLPSASSYLIYPSNVEAPTPSNVPTSQGP 251
BLAST of PI0013552 vs. TAIR 10
Match:
AT1G76460.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )
HSP 1 Score: 99.4 bits (246), Expect = 5.1e-21
Identity = 102/290 (35.17%), Postives = 131/290 (45.17%), Query Frame = 0
Query: 2 ANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYLNNLATFLKLLLSLIKTPPNLKDMD 61
+ + + S FGDTTFTKVFVGGLAWET ++ +R + L+ ++ K K
Sbjct: 9 SGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYG 68
Query: 62 SRDLFKLLQVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPY 121
VTFRDPE+ARRACA+P PIIDGRRANCN+A+LGRPRP P +V P
Sbjct: 69 F--------VTFRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPLP-----YAVIPN 128
Query: 122 QGSTMQAQATPSYGGVPSPL-----NQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHH 181
++ A+P G V P N P P P V PYG AY P+Y Y
Sbjct: 129 MPGRLR-PASPYIGNVQGPRGSLIGNYPYQQPLPYNYQQGVVYPYGVTAYGPEYMY-SQS 188
Query: 182 QAVYNPQVQQ--------PQMYQQTPYYYGYSSRGTTFPNPSQSHHHPRLLLPPSYVYYP 241
Q +Y+P + Q P Y YG S+ T PN +P S++
Sbjct: 189 QGLYSPYMGQQYLQVYGVPGAVNSPVYQYGQLSQ--TIPNGHGYTAVQGYSVPGSHILQL 248
Query: 242 PPPPQFEASSFNYPPPHQPQP---------QPQIIRHRFSSTDSQTSQQT 270
P ++ + P P P Q II H S S QT
Sbjct: 249 GGPTVSTMTTSSMPALQAPYPSGIPGPAPVQSHIIVHSPQFMQSTASDQT 281
BLAST of PI0013552 vs. TAIR 10
Match:
AT1G20880.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )
HSP 1 Score: 95.1 bits (235), Expect = 9.6e-20
Identity = 99/284 (34.86%), Postives = 125/284 (44.01%), Query Frame = 0
Query: 2 ANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMRTYLNNLATFLKLLLSLIKTPPNLKDMD 61
+ + + S FGDTTFTKVFVGGLAWET ++ +R + + L+ ++ K K
Sbjct: 9 SGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYG 68
Query: 62 SRDLFKLLQVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPY 121
VTFRDPE+ARRAC +P PIIDGRRANCN+A+LGR RP Q +V P+
Sbjct: 69 F--------VTFRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPM-----QYAVIPH 128
Query: 122 QGSTMQAQATPSYGGVPSPL-----NQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHH 181
++ +P G V SP + P PP V PYG Y PDY Y
Sbjct: 129 APGRVR-PPSPYVGSVQSPRGLHFGSHPYHQPPTYNYQQGVVYPYGVTPYGPDYMY-SQS 188
Query: 182 QAVYNPQVQQ--------PQMYQQTPYYYGYSSR---GTTFPNPSQSHHHPRLLLPPSYV 241
Q Y P + Q P Y YG S G Q + H P S+V
Sbjct: 189 QGFYGPYMGQQYLQVYGVPGAVNSPGYQYGQLSHTIPGAHGYTAGQGYSH-----PGSHV 248
Query: 242 YYPPPPPQFEASSFNYPPPHQPQPQPQIIRHRFSSTDSQTSQQT 270
A YP P P Q I++ S S QT
Sbjct: 249 LQLGATSPMSAIQSPYPSPSAPTHQRVIVQTPPQYIQSSGSDQT 272
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q9M1S3 | 1.4e-07 | 30.89 | Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S... | [more] |
Q9H0Z9 | 5.9e-06 | 33.51 | RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2 | [more] |
Q62176 | 1.7e-05 | 32.98 | RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2 | [more] |
Q9BX46 | 8.5e-05 | 33.33 | RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1 | [more] |
D3Z4I3 | 1.1e-04 | 33.33 | RNA-binding protein 24 OS=Mus musculus OX=10090 GN=Rbm24 PE=1 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
A0A0A0LGV2 | 2.5e-129 | 85.47 | RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G889750 PE=4 SV... | [more] |
A0A6J1DIJ5 | 2.2e-88 | 65.66 | RNA-binding protein 38 OS=Momordica charantia OX=3673 GN=LOC111020331 PE=4 SV=1 | [more] |
A0A6J1IJV9 | 7.5e-81 | 63.79 | RNA-binding protein 38-like OS=Cucurbita maxima OX=3661 GN=LOC111475419 PE=4 SV=... | [more] |
A0A6J1F8X9 | 4.9e-80 | 63.32 | RNA-binding protein 38-like OS=Cucurbita moschata OX=3662 GN=LOC111443164 PE=4 S... | [more] |
A0A1S4E5K3 | 2.0e-73 | 92.68 | leucine-rich repeat extensin-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103503... | [more] |
Match Name | E-value | Identity | Description | |
XP_004136431.1 | 5.3e-129 | 85.47 | RNA-binding protein 38 [Cucumis sativus] >KGN60219.1 hypothetical protein Csa_00... | [more] |
XP_038897135.1 | 8.7e-108 | 75.00 | RNA-binding protein 38 [Benincasa hispida] | [more] |
XP_022152706.1 | 4.5e-88 | 65.66 | RNA-binding protein 38 [Momordica charantia] | [more] |
KAG6591668.1 | 1.2e-80 | 63.67 | putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_022975652.1 | 1.6e-80 | 63.79 | RNA-binding protein 38-like [Cucurbita maxima] >XP_022975653.1 RNA-binding prote... | [more] |
Match Name | E-value | Identity | Description | |
AT1G78260.2 | 5.8e-41 | 43.37 | RNA-binding (RRM/RBD/RNP motifs) family protein | [more] |
AT1G78260.1 | 1.9e-39 | 41.07 | RNA-binding (RRM/RBD/RNP motifs) family protein | [more] |
AT1G22330.1 | 2.3e-37 | 41.61 | RNA-binding (RRM/RBD/RNP motifs) family protein | [more] |
AT1G76460.1 | 5.1e-21 | 35.17 | RNA-binding (RRM/RBD/RNP motifs) family protein | [more] |
AT1G20880.1 | 9.6e-20 | 34.86 | RNA-binding (RRM/RBD/RNP motifs) family protein | [more] |