PI0013463 (gene) Melon (PI 482460) v1

Overview


Name	PI0013463
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	SWIM-type domain-containing protein
Location	chr04: 12037761 .. 12038029 (-)
RNA-Seq Expression	PI0013463
Synteny	PI0013463

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGCTACTTATTGTCCAACTACAAGCGTTGTTATTACGGTCGATTCCATTCGATACAACATCCAGACTACTGGCCAGAGTTATCATTCACTGAAGTTCGCCCAAATGCGAACTTACTTAGAGAACCCGATCGACCCAGAACTACAAGGATCCATAATGAAATGGATTGGAAGGAGTCTGATCAATCAGTAAGATGCACGATATGTAAAGCGGAAGGACACAACAGACGTACTTGTCCTCAACGTGCTTCTTCTTCAAGACATTGA

mRNA sequence

ATGACTGCTACTTATTACTACTGGCCAGAGTTATCATTCACTGAAGTTCGCCCAAATGCGAACTTACTTAGAGAACCCGATCGACCCAGAACTACAAGGATCCATAATGAAATGGATTGGAAGGAGTCTGATCAATCAGTAAGATGCACGATATGTAAAGCGGAAGGACACAACAGACGTACTTGTCCTCAACGTGCTTCTTCTTCAAGACATTGA

Coding sequence (CDS)

ATGACTGCTACTTATTACTACTGGCCAGAGTTATCATTCACTGAAGTTCGCCCAAATGCGAACTTACTTAGAGAACCCGATCGACCCAGAACTACAAGGATCCATAATGAAATGGATTGGAAGGAGTCTGATCAATCAGTAAGATGCACGATATGTAAAGCGGAAGGACACAACAGACGTACTTGTCCTCAACGTGCTTCTTCTTCAAGACATTGA

Protein sequence

MTATYYYWPELSFTEVRPNANLLREPDRPRTTRIHNEMDWKESDQSVRCTICKAEGHNRRTCPQRASSSRH

Homology

[Close]

BLAST of PI0013463 vs. ExPASy TrEMBL
Match: A0A5A7VDU8 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00030 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.1e-25
Identity = 59/66 (89.39%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 7   YWPELSFTEVRPNANLLREPDRPRTTRIHNEMDWKESDQSVRCTICKAEGHNRRTCPQRA 66
           YWPELSFTEVRPNANLL+ PDRPRTTRIHNEMDWKES QS+RCTICK EGHNRR CPQRA
Sbjct: 200 YWPELSFTEVRPNANLLKGPDRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRICPQRA 259

Query: 67  -SSSRH 72
            SSSRH
Sbjct: 260 SSSSRH 265

[Close]

BLAST of PI0013463 vs. ExPASy TrEMBL
Match: A0A5D3BS92 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold201G00230 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 5.5e-25
Identity = 58/66 (87.88%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 7   YWPELSFTEVRPNANLLREPDRPRTTRIHNEMDWKESDQSVRCTICKAEGHNRRTCPQRA 66
           YWPELSFTEVRPNA+LL+ P RPRTTRIHNEMDWKES QS+RCTICK EGHNRRTCPQRA
Sbjct: 606 YWPELSFTEVRPNADLLKGPGRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRTCPQRA 665

Query: 67  -SSSRH 72
            SSSRH
Sbjct: 666 SSSSRH 671

[Close]

BLAST of PI0013463 vs. ExPASy TrEMBL
Match: A0A5A7TN56 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00290 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 5.5e-25
Identity = 58/66 (87.88%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 7   YWPELSFTEVRPNANLLREPDRPRTTRIHNEMDWKESDQSVRCTICKAEGHNRRTCPQRA 66
           YWPELSFTEVRPNA+LL+ P RPRTTRIHNEMDWKES QS+RCTICK EGHNRRTCPQRA
Sbjct: 606 YWPELSFTEVRPNADLLKGPGRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRTCPQRA 665

Query: 67  -SSSRH 72
            SSSRH
Sbjct: 666 SSSSRH 671

[Close]

BLAST of PI0013463 vs. ExPASy TrEMBL
Match: A0A0A0KT57 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G582740 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 7.2e-25
Identity = 58/72 (80.56%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 1  MTATYYYWPELSFTEVRPNANLLREPDRPRTTRIHNEMDWKESDQSVRCTICKAEGHNRR 60
          M AT+YYW E+SFTEVRPNA+LL+EP RPRTTRI NEMDWKES QS+RCT+ K EGHNRR
Sbjct: 1  MNATFYYWLEISFTEVRPNADLLKEPGRPRTTRIQNEMDWKESSQSLRCTVYKVEGHNRR 60

Query: 61 TCPQRA-SSSRH 72
          TCPQRA SSSRH
Sbjct: 61 TCPQRASSSSRH 72

[Close]

BLAST of PI0013463 vs. ExPASy TrEMBL
Match: A0A5A7SW50 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G001280 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 8.0e-24
Identity = 56/66 (84.85%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 7   YWPELSFTEVRPNANLLREPDRPRTTRIHNEMDWKESDQSVRCTICKAEGHNRRTCPQRA 66
           YWPELSFTE+RPNA+LL+ P RPRTTRI NEMDWKES QS+RCTICK EGHNRRTCPQRA
Sbjct: 165 YWPELSFTEIRPNADLLKGPGRPRTTRIFNEMDWKESGQSLRCTICKVEGHNRRTCPQRA 224

Query: 67  -SSSRH 72
            SSSRH
Sbjct: 225 SSSSRH 230

[Close]

BLAST of PI0013463 vs. NCBI nr
Match: KAA0063901.1 (hypothetical protein E6C27_scaffold616G00270 [Cucumis melo var. makuwa] >TYK15904.1 hypothetical protein E5676_scaffold94G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 125.2 bits (313), Expect = 2.3e-25
Identity = 59/66 (89.39%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 7   YWPELSFTEVRPNANLLREPDRPRTTRIHNEMDWKESDQSVRCTICKAEGHNRRTCPQRA 66
           YWPELSFTEVRPNANLL+ PDRPRTTRIHNEMDWKES QS+RCTICK EGHNRR CPQRA
Sbjct: 200 YWPELSFTEVRPNANLLKGPDRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRICPQRA 259

Query: 67  -SSSRH 72
            SSSRH
Sbjct: 260 SSSSRH 265

[Close]

BLAST of PI0013463 vs. NCBI nr
Match: XP_031737534.1 (uncharacterized protein LOC116402427 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 6.7e-25
Identity = 55/65 (84.62%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 7   YWPELSFTEVRPNANLLREPDRPRTTRIHNEMDWKESDQSVRCTICKAEGHNRRTCPQRA 66
           YWPE+SFTEVRPNA+LL+ P RPRTTRI NEMDWKES QS+RCTICK EGHNRRTCP+RA
Sbjct: 569 YWPEISFTEVRPNADLLKGPGRPRTTRIQNEMDWKESSQSIRCTICKVEGHNRRTCPERA 628

Query: 67  SSSRH 72
           SSSRH
Sbjct: 629 SSSRH 633

[Close]

BLAST of PI0013463 vs. NCBI nr
Match: KAA0044308.1 (uncharacterized protein E6C27_scaffold46G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 122.9 bits (307), Expect = 1.1e-24
Identity = 58/66 (87.88%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 7   YWPELSFTEVRPNANLLREPDRPRTTRIHNEMDWKESDQSVRCTICKAEGHNRRTCPQRA 66
           YWPELSFTEVRPNA+LL+ P RPRTTRIHNEMDWKES QS+RCTICK EGHNRRTCPQRA
Sbjct: 606 YWPELSFTEVRPNADLLKGPGRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRTCPQRA 665

Query: 67  -SSSRH 72
            SSSRH
Sbjct: 666 SSSSRH 671

[Close]

BLAST of PI0013463 vs. NCBI nr
Match: TYK02543.1 (uncharacterized protein E5676_scaffold201G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 122.9 bits (307), Expect = 1.1e-24
Identity = 58/66 (87.88%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 7   YWPELSFTEVRPNANLLREPDRPRTTRIHNEMDWKESDQSVRCTICKAEGHNRRTCPQRA 66
           YWPELSFTEVRPNA+LL+ P RPRTTRIHNEMDWKES QS+RCTICK EGHNRRTCPQRA
Sbjct: 606 YWPELSFTEVRPNADLLKGPGRPRTTRIHNEMDWKESGQSLRCTICKVEGHNRRTCPQRA 665

Query: 67  -SSSRH 72
            SSSRH
Sbjct: 666 SSSSRH 671

[Close]

BLAST of PI0013463 vs. NCBI nr
Match: KGN51592.1 (hypothetical protein Csa_008873 [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 1.5e-24
Identity = 58/72 (80.56%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 1  MTATYYYWPELSFTEVRPNANLLREPDRPRTTRIHNEMDWKESDQSVRCTICKAEGHNRR 60
          M AT+YYW E+SFTEVRPNA+LL+EP RPRTTRI NEMDWKES QS+RCT+ K EGHNRR
Sbjct: 1  MNATFYYWLEISFTEVRPNADLLKEPGRPRTTRIQNEMDWKESSQSLRCTVYKVEGHNRR 60

Query: 61 TCPQRA-SSSRH 72
          TCPQRA SSSRH
Sbjct: 61 TCPQRASSSSRH 72

The following BLAST results are available for this feature:

BLAST of PI0013463 vs.


Match Name	E-value	Identity	Description

BLAST of PI0013463 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VDU8	1.1e-25	89.39	SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5D3BS92	5.5e-25	87.88	SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5A7TN56	5.5e-25	87.88	SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A0A0KT57	7.2e-25	80.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G582740 PE=4 SV=1	[more]
A0A5A7SW50	8.0e-24	84.85	SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]

BLAST of PI0013463 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063901.1	2.3e-25	89.39	hypothetical protein E6C27_scaffold616G00270 [Cucumis melo var. makuwa] >TYK1590...	[more]
XP_031737534.1	6.7e-25	84.62	uncharacterized protein LOC116402427 [Cucumis sativus]	[more]
KAA0044308.1	1.1e-24	87.88	uncharacterized protein E6C27_scaffold46G00290 [Cucumis melo var. makuwa]	[more]
TYK02543.1	1.1e-24	87.88	uncharacterized protein E5676_scaffold201G00230 [Cucumis melo var. makuwa]	[more]
KGN51592.1	1.5e-24	80.56	hypothetical protein Csa_008873 [Cucumis sativus]	[more]

BLAST of PI0013463 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	4.10.60.10		coord: 25..71 e-value: 3.8E-5 score: 25.3
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 41..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0013463.1	PI0013463.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010073	meristem maintenance
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding