PI0013405 (gene) Melon (PI 482460) v1

Overview


Name	PI0013405
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like
Location	chr12: 1155808 .. 1158901 (+)
RNA-Seq Expression	PI0013405
Synteny	PI0013405

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAGACGAGTGGCTAATTTCCCGGCTGAAAAGATCGGGAGAATGGGACCCGCGAAGAGTACCATTTAGCTAAGAGCGAACCCACGCGTCAGCAACTAAGCCACTCAGTCGAAGCTCCTTTTACATTTTTCTGTGAACCACTGAACCTTCTCTTGCTGCACCAAATCACTCTTCATCCTTCAACAGTTCTTCAAGCACGCCGAGAGAAGAGGGCGAGAGAGGCCATGGAAGCTGCAATTTGCGGTCGAGTACCTCTTTCACCCAACCAGTTCTTCACCTCAACCAAGCCAGGTATTCAAACTTCTTCCAATTTCCTCCTCTTAACTTTTTCTTCCTCAATCAATTTGTCTCTACTTCTTTTGGGTGTGTGTGCTATGTTCTTAATCCGAGTTCAGGTGAAGGATTTTGAGAAATTTCGGTTTTGTTGATGAATATTTGCATAATTCCTGGGTTTGTGGAGATTGAAGGTTTTGGCTCCATAGAATGAGTAGAATCAATATTATTTACCGGGAAAATCTGCGTGCCATCTGCGTGTAGAATGATTATTTTCCTGTTTGTATGAATTTTATTTTTGTCGTAGAGGGGAATAAAGTGTTGCATTATGAGGGGAGAACTACAAATGGAGCCTAATTGGTGTTTAGAAGAAGATCTGAAGCTTTTTGTTTGTTTGTGTCTGTATTTACGCTGCAGTAGTTTAAAGCTTTCGTGGTTGTTTAGTATAATATTGTTTGTGTGGGTGGAAGTATTGATGTATTTAAATATGTTGTAATTCAAACATGTATGAGAGCAGGAGGGCTTATTTTCAAATCTTGTAGTGTCATTTTTATTAGATAATATGAAGTTCCATCTCAAAATCGATTAGCGATAAAAGGAGCTGCTTATCTATCATTTAAGATTGTGAGGTTTTTGTCATTGTAGGTTCCTTAGCGTGTCCCCTCAAGATAATGCCTCTTTTGGTTCACCATTCATGAATCATTTTTTCTTAGCAAAATATTTGTTTGGGTTTTATGGATTATGTTAACATATTAGATAATATGAAGTTTCATCTTAAAACCAATAGGCACTAAGAGGTTAGAGGAGTAGCTCATCCATCTTATTAAGATTGTGAGACGGTCGATCTTCTAATATGCTAGTTTCAATATCTGAGGTCCTTTAATTTTTCTGATGTGGGGATCCTCAACTATTTTATCTCCAATATTGTATTTTGATTGATAAAACACTAAAAATTGAATTAATAAAGCTTTTCAATTGGAACTTTGAGTAGAAAGCTATTGTCTTCAGAAAACTGTATACTTTTTGCATCAATATAAAGCTTGCAACAAAATTAATCATAAAAAACTATCAACATTTGAAGAAGGGTAACATTCTCCCATTCGTTCACACCAAAGGTTCAAAAATCTTCCTTGTTGACAGCAAGCTATAATGATATCTTCAAACCCTGGAAAGGATGACCCACAAAAATGGGGGCAAGAATGTCATTGATGTTGCTAGACAGAATCATTGACCAACCAAAAGCATCCAACATTAGTATCCAATATCAAGAGGCAAAAGAGAAACCTAGCAAAAAGATGGCATAGATGTTAAGAAAACACGTCACACACCAAAAAGCAGAGGCAAACGTGGAGCATTCTCTTTTGAAGGCCATCAGTAGCTCCCACAAAAAGATTTAAATTTCCTTTGGATAAGCTTCCTTCCAAATCACTGAATAAAGTTTTTTCGGAGATGAGTCCTTAGCATGGATAGAATCCTTCGTTAATAGATGTACATGAAAGCTTTAGGGATCAAGAGGTCAAATCAACAAATTGTTGACATTCCTCTTAGGCTTGTCCTGGTGGCAAAGAGTTGGGATGTTTGGTGATATTCACCAAAGTATTACTTTAAGTCTTGCAGGCAAAAAATTTAATATCAATCCAACCCATGTTTCATCTAAGACCTAGAAAAGTAAAATGCATTAAATGCTCATTTAAACTCAACTGCTTAGGACATATAATCTTGGCTTAGAGGTTAAAGAGTCACAGGCTTGACCCTACTTATTGTTGACTAGTTTGTGAATCATGCAAATGGATAACCATAAAAGAGGTTCACTGTAAGAACTAAATTTGCTAGGATCTTAGATCCTATTTATATACTCTTCAAAACACCTTTAAATTTGTAATTTGAGACAAATATCAATGGCCTATTCTAAACGTTAATATTCATAATCATGGTATGTGGTTTTACCTGCAAAAGTGTGGAGGCTGTTCATTTTATTATTCATTGGAACTTGCATGACATCTTCATACAATATTACCCATTTATAATTGCTATTTGTGTCATAGGGGATAAATACTATTTTCATAAACAATGTAGAAACCGGAGCGTCTTAATGATGTTATCAGTTGCTGAGCTTGGAAAAGGCGGGGGGTTGTTGGAAAAGCCAACAATAGAGAAGACAACACCAGGCCGTGAATCTGAGTTTGATGTTAGGTACAAAACACTTCTCCTTTGAATGTATGTCACGTATAAGCAACTAAAGATTTGCATGCATTAGAGAAGGTCTCAACTTCCAAAATTATTTTGATCTTCAGGAAGTCAAGGAAAACATCTCCGCCTTATCGAGTGTTGCTACATAACGACAATTACAACAAGCGGGAATACGTTGTTCAAGTTCTGATGAAGGTGATCCCTGGAATGACCCTTGACAATGCAGTCAACATAATGCAGGAGGCGCATTACAATGGGATGGCAGTGGTGATTATCTGCGCTCAAGTAGACGCAGAAGATCACTGCATGCAGCTTAGAGGCAATGGCCTTCTAAGTTCAATCGAGCCTGCAAGCGATGGTTGTTGAATAAAAAACATAGATTGTGTAATGTACTCTTTTTCCCCCCTTAGTTATCAGCCATATTAAAATTGCATGTCCTCAACTGCTACAATATTGCAAGTTGTACCTATGTACATAAATAGAGATACTTCATAAACAAACAAACTTCAATTGATGAATACAATTATCACTCTAGTTATGTTATGAGTTGTATACAAAAACACATCTTCCTTTCACTAAACTTTTTCTTTACTCGACTTCCATGTGGCTTTTTGTGCTCTTATGGATGCAAT

mRNA sequence

TTAGACGAGTGGCTAATTTCCCGGCTGAAAAGATCGGGAGAATGGGACCCGCGAAGAGTACCATTTAGCTAAGAGCGAACCCACGCGTCAGCAACTAAGCCACTCAGTCGAAGCTCCTTTTACATTTTTCTGTGAACCACTGAACCTTCTCTTGCTGCACCAAATCACTCTTCATCCTTCAACAGTTCTTCAAGCACGCCGAGAGAAGAGGGCGAGAGAGGCCATGGAAGCTGCAATTTGCGGTCGAGTACCTCTTTCACCCAACCAGTTCTTCACCTCAACCAAGCCAGAGGGGAATAAAGTGTTGCATTATGAGGGGAGAACTACAAATGGAGCCTAATTGGTGTTTAGAAGAAGATCTGAAGCTTTTTGTTTGTTTGTGTCTGTATTTACGCTGCAGTAGTTTAAAGCTTTCGTGGTTGTTTAGTATAATATTGTTTGTGTGGGTGGAAGTATTGATGTATTTAAATATGTTGTAATTCAAACATGTATGAGAGCAGGAGGGCTTATTTTCAAATCTTGTAGTGTCATTTTTATTAGATAATATGAAGTTCCATCTCAAAATCGATTAGCGATAAAAGGAGCTGCTTATCTATCATTTAAGATTGTGAGGTTTTTGTCATTGTAGGTTCCTTAGCGTGTCCCCTCAAGATAATGCCTCTTTTGGTTCACCATTCATGAATCATTTTTTCTTAGCAAAATATTTGTTTGGGTTTTATGGATTATGTTAACATATTAGATAATATGAAGTTTCATCTTAAAACCAATAGGCACTAAGAGGTTAGAGGAGTAGCTCATCCATCTTATTAAGATTGTGAGACGGTCGATCTTCTAATATGCTAGTTTCAATATCTGAGGTCCTTTAATTTTTCTGATGTGGGGATCCTCAACTATTTTATCTCCAATATTGTATTTTGATTGATAAAACACTAAAAATTGAATTAATAAAGCTTTTCAATTGGAACTTTGAGTAGAAAGCTATTGTCTTCAGAAAACTGTATACTTTTTGCATCAATATAAAGCTTGCAACAAAATTAATCATAAAAAACTATCAACATTTGAAGAAGGGTAACATTCTCCCATTCGTTCACACCAAAGGTTCAAAAATCTTCCTTGTTGACAGCAAGCTATAATGATATCTTCAAACCCTGGAAAGGATGACCCACAAAAATGGGGGCAAGAATGTCATTGATGTTGCTAGACAGAATCATTGACCAACCAAAAGCATCCAACATTAGTATCCAATATCAAGAGGCAAAAGAGAAACCTAGCAAAAAGATGGCATAGATGTTAAGAAAACACGTCACACACCAAAAAGCAGAGGCAAACGTGGAGCATTCTCTTTTGAAGGCCATCAGTAGCTCCCACAAAAAGATTTAAATTTCCTTTGGATAAGCTTCCTTCCAAATCACTGAATAAAGTTTTTTCGGAGATGAGTCCTTAGCATGGATAGAATCCTTCGTTAATAGATGTACATGAAAGCTTTAGGGATCAAGAGGTCAAATCAACAAATTGTTGACATTCCTCTTAGGCTTGTCCTGGTGGCAAAGAGTTGGGATGTTTGGTGATATTCACCAAAGTATTACTTTAAGTCTTGCAGGCAAAAAATTTAATATCAATCCAACCCATGTTTCATCTAAGACCTAGAAAAGTAAAATGCATTAAATGCTCATTTAAACTCAACTGCTTAGGACATATAATCTTGGCTTAGAGGTTAAAGAGTCACAGGCTTGACCCTACTTATTGTTGACTAGTTTGTGAATCATGCAAATGGATAACCATAAAAGAGGTTCACTGTAAGAACTAAATTTGCTAGGATCTTAGATCCTATTTATATACTCTTCAAAACACCTTTAAATTTGTAATTTGAGACAAATATCAATGGCCTATTCTAAACGTTAATATTCATAATCATGGTATGTGGTTTTACCTGCAAAAGTGTGGAGGCTGTTCATTTTATTATTCATTGGAACTTGCATGACATCTTCATACAATATTACCCATTTATAATTGCTATTTGTGTCATAGGGGATAAATACTATTTTCATAAACAATGTAGAAACCGGAGCGTCTTAATGATGTTATCAGTTGCTGAGCTTGGAAAAGGCGGGGGGTTGTTGGAAAAGCCAACAATAGAGAAGACAACACCAGGCCGTGAATCTGAGTTTGATGTTAGGAAGTCAAGGAAAACATCTCCGCCTTATCGAGTGTTGCTACATAACGACAATTACAACAAGCGGGAATACGTTGTTCAAGTTCTGATGAAGGTGATCCCTGGAATGACCCTTGACAATGCAGTCAACATAATGCAGGAGGCGCATTACAATGGGATGGCAGTGGTGATTATCTGCGCTCAAGTAGACGCAGAAGATCACTGCATGCAGCTTAGAGGCAATGGCCTTCTAAGTTCAATCGAGCCTGCAAGCGATGGTTGTTGAATAAAAAACATAGATTGTGTAATGTACTCTTTTTCCCCCCTTAGTTATCAGCCATATTAAAATTGCATGTCCTCAACTGCTACAATATTGCAAGTTGTACCTATGTACATAAATAGAGATACTTCATAAACAAACAAACTTCAATTGATGAATACAATTATCACTCTAGTTATGTTATGAGTTGTATACAAAAACACATCTTCCTTTCACTAAACTTTTTCTTTACTCGACTTCCATGTGGCTTTTTGTGCTCTTATGGATGCAAT

Coding sequence (CDS)

ATGGTATGTGGTTTTACCTGCAAAAGTGTGGAGGCTGTTCATTTTATTATTCATTGGAACTTGCATGACATCTTCATACAATATTACCCATTTATAATTGCTATTTGTGTCATAGGGGATAAATACTATTTTCATAAACAATGTAGAAACCGGAGCGTCTTAATGATGTTATCAGTTGCTGAGCTTGGAAAAGGCGGGGGGTTGTTGGAAAAGCCAACAATAGAGAAGACAACACCAGGCCGTGAATCTGAGTTTGATGTTAGGAAGTCAAGGAAAACATCTCCGCCTTATCGAGTGTTGCTACATAACGACAATTACAACAAGCGGGAATACGTTGTTCAAGTTCTGATGAAGGTGATCCCTGGAATGACCCTTGACAATGCAGTCAACATAATGCAGGAGGCGCATTACAATGGGATGGCAGTGGTGATTATCTGCGCTCAAGTAGACGCAGAAGATCACTGCATGCAGCTTAGAGGCAATGGCCTTCTAAGTTCAATCGAGCCTGCAAGCGATGGTTGTTGA

Protein sequence

MVCGFTCKSVEAVHFIIHWNLHDIFIQYYPFIIAICVIGDKYYFHKQCRNRSVLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC

Homology

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BLAST of PI0013405 vs. ExPASy Swiss-Prot
Match: Q9SX29 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPLS1 PE=1 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 8.4e-56
Identity = 107/138 (77.54%), Postives = 120/138 (86.96%), Query Frame = 0


Query: 39  GDKYYFHK-QCRNRSVLMMLSV-AELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPP 98
           GDK+   K  C NRS+LM LS  A LGKGGG+L+KP IEKTTPGRESEFD+RKS+K +PP
Sbjct: 22  GDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPIIEKTTPGRESEFDLRKSKKIAPP 81

Query: 99  YRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCM 158
           YRV+LHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQEAH NG+AVVI+CAQ DAE HCM
Sbjct: 82  YRVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNIMQEAHINGLAVVIVCAQADAEQHCM 141

Query: 159 QLRGNGLLSSIEPASDGC 175
           QLRGNGLLSS+EP   GC
Sbjct: 142 QLRGNGLLSSVEPDGGGC 159

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BLAST of PI0013405 vs. ExPASy Swiss-Prot
Match: A0A2K3CNL6 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=CLPS1 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.1e-22
Identity = 58/109 (53.21%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 66  GGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTL 125
           GG+++ PT   TT  ++    V +S+K  P Y+VLLHNDNYNKREYVV+VL+KV+  +T+
Sbjct: 61  GGVMDAPT---TT--QQPASGVERSQKRPPIYKVLLHNDNYNKREYVVKVLLKVVEQITV 120

Query: 126 DNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 175
           D+AV  MQEAH  G+A+V+ C Q +AE +C  LR NGL S+IEP   GC
Sbjct: 121 DDAVTCMQEAHETGVALVVACPQDNAERYCEGLRLNGLTSTIEPG--GC 162

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BLAST of PI0013405 vs. ExPASy Swiss-Prot
Match: Q31QE7 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=clpS PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 9.0e-18
Identity = 45/79 (56.96%), Postives = 56/79 (70.89%), Query Frame = 0


Query: 91  RKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVD 150
           RK +P YRVLLHND++N  EYVV VLM+ +P +T   AV+IM EAH NG  +VI C    
Sbjct: 15  RKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEP 74

Query: 151 AEDHCMQLRGNGLLSSIEP 170
           AE +C QL+ +GL SSIEP
Sbjct: 75  AEFYCEQLKSHGLSSSIEP 93

[Close]

BLAST of PI0013405 vs. ExPASy Swiss-Prot
Match: Q5N3U1 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=clpS PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.2e-15
Identity = 40/73 (54.79%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 91  RKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVD 150
           RK +P YRVLLHND++N  EYVV VLM+ +P +T   AV+IM EAH NG  +VI C    
Sbjct: 15  RKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEP 74

Query: 151 AEDHCMQLRGNGL 164
           AE +C QL+ +GL
Sbjct: 75  AEFYCEQLKSHGL 87

[Close]

BLAST of PI0013405 vs. ExPASy Swiss-Prot
Match: Q3AUR5 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain CC9902) OX=316279 GN=clpS PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.4e-13
Identity = 44/102 (43.14%), Postives = 61/102 (59.80%), Query Frame = 0


Query: 70  EKPTIEKTTPGRESEFD--VRKSRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDN 129
           E PT    +PG  +  D    + RK SP Y+VLLHND  N  EYV+  L +V+P ++  +
Sbjct: 4   ETPT---RSPGGAAVLDKAPERVRKRSPRYKVLLHNDPVNSMEYVMTTLRQVVPQLSEQD 63

Query: 130 AVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEP 170
           A+ +M EAH  G+ +VI+C    AE +C  L+  GL SSIEP
Sbjct: 64  AMAVMLEAHNTGVGLVIVCDIEPAEFYCETLKSKGLTSSIEP 102

[Close]

BLAST of PI0013405 vs. ExPASy TrEMBL
Match: A0A6J1C511 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008549 PE=3 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.2e-70
Identity = 133/136 (97.79%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 39  GDKYYFHKQCRNRSVLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYR 98
           GDKYYFHKQCRNRS LMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKT+PPYR
Sbjct: 23  GDKYYFHKQCRNRSTLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYR 82

Query: 99  VLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL 158
           VLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGM+VVIICAQVDAEDHCMQL
Sbjct: 83  VLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQL 142

Query: 159 RGNGLLSSIEPASDGC 175
           RGNGLLSSIEPASDGC
Sbjct: 143 RGNGLLSSIEPASDGC 158

[Close]

BLAST of PI0013405 vs. ExPASy TrEMBL
Match: A0A1S3C561 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103496767 PE=3 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.2e-70
Identity = 133/136 (97.79%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 39  GDKYYFHKQCRNRSVLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYR 98
           GDKYYFHKQCRNRS LMM+SVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYR
Sbjct: 23  GDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYR 82

Query: 99  VLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL 158
           VLLHNDN+NKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL
Sbjct: 83  VLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL 142

Query: 159 RGNGLLSSIEPASDGC 175
           RGNGLLSSIEPASDGC
Sbjct: 143 RGNGLLSSIEPASDGC 158

[Close]

BLAST of PI0013405 vs. ExPASy TrEMBL
Match: A0A0A0LSY6 (ClpS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G042210 PE=3 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 4.7e-70
Identity = 132/136 (97.06%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 39  GDKYYFHKQCRNRSVLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYR 98
           GDKYYFHKQCRNRS LMM+SVAELGKGGGLLEKP IEKTTPGRESEFDVRKSRKTSPPYR
Sbjct: 23  GDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPAIEKTTPGRESEFDVRKSRKTSPPYR 82

Query: 99  VLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL 158
           VLLHNDN+NKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL
Sbjct: 83  VLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL 142

Query: 159 RGNGLLSSIEPASDGC 175
           RGNGLLSSIEPASDGC
Sbjct: 143 RGNGLLSSIEPASDGC 158

[Close]

BLAST of PI0013405 vs. ExPASy TrEMBL
Match: A0A6J1K0P0 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111490541 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 7.6e-68
Identity = 128/136 (94.12%), Postives = 133/136 (97.79%), Query Frame = 0


Query: 39  GDKYYFHKQCRNRSVLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYR 98
           GDKYYFHKQCRNRS+L MLSVAELGKGGGLLEKPT EKTTPGRESEF+VRKSRK +PPYR
Sbjct: 23  GDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPTTEKTTPGRESEFNVRKSRKIAPPYR 82

Query: 99  VLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL 158
           VLLHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL
Sbjct: 83  VLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL 142

Query: 159 RGNGLLSSIEPASDGC 175
           RGNGLLSSIEPASDGC
Sbjct: 143 RGNGLLSSIEPASDGC 158

[Close]

BLAST of PI0013405 vs. ExPASy TrEMBL
Match: A0A6J1GS56 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111457001 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.9e-67
Identity = 127/136 (93.38%), Postives = 132/136 (97.06%), Query Frame = 0


Query: 39  GDKYYFHKQCRNRSVLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYR 98
           GDKYYFHKQCRNRS+L MLSVAELGKGGGLLEKP  EKTTPGRESEF+VRKSRK +PPYR
Sbjct: 23  GDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEKTTPGRESEFNVRKSRKIAPPYR 82

Query: 99  VLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL 158
           VLLHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL
Sbjct: 83  VLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL 142

Query: 159 RGNGLLSSIEPASDGC 175
           RGNGLLSSIEPASDGC
Sbjct: 143 RGNGLLSSIEPASDGC 158

[Close]

BLAST of PI0013405 vs. NCBI nr
Match: XP_038894047.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Benincasa hispida] >XP_038894048.1 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 277.3 bits (708), Expect = 8.9e-71
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 39  GDKYYFHKQCRNRSVLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYR 98
           GDKYYFHKQCRNRSVLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRK RKTSPPYR
Sbjct: 23  GDKYYFHKQCRNRSVLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKLRKTSPPYR 82

Query: 99  VLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL 158
           VLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL
Sbjct: 83  VLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL 142

Query: 159 RGNGLLSSIEPASDGC 175
           RGNGLLSSIEPASDGC
Sbjct: 143 RGNGLLSSIEPASDGC 158

[Close]

BLAST of PI0013405 vs. NCBI nr
Match: XP_008456997.1 (PREDICTED: ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucumis melo])

HSP 1 Score: 275.8 bits (704), Expect = 2.6e-70
Identity = 133/136 (97.79%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 39  GDKYYFHKQCRNRSVLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYR 98
           GDKYYFHKQCRNRS LMM+SVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYR
Sbjct: 23  GDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYR 82

Query: 99  VLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL 158
           VLLHNDN+NKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL
Sbjct: 83  VLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL 142

Query: 159 RGNGLLSSIEPASDGC 175
           RGNGLLSSIEPASDGC
Sbjct: 143 RGNGLLSSIEPASDGC 158

[Close]

BLAST of PI0013405 vs. NCBI nr
Match: XP_022136971.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 [Momordica charantia])

HSP 1 Score: 275.8 bits (704), Expect = 2.6e-70
Identity = 133/136 (97.79%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 39  GDKYYFHKQCRNRSVLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYR 98
           GDKYYFHKQCRNRS LMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKT+PPYR
Sbjct: 23  GDKYYFHKQCRNRSTLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYR 82

Query: 99  VLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL 158
           VLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGM+VVIICAQVDAEDHCMQL
Sbjct: 83  VLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQL 142

Query: 159 RGNGLLSSIEPASDGC 175
           RGNGLLSSIEPASDGC
Sbjct: 143 RGNGLLSSIEPASDGC 158

[Close]

BLAST of PI0013405 vs. NCBI nr
Match: XP_004137466.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucumis sativus] >KGN64109.1 hypothetical protein Csa_014084 [Cucumis sativus])

HSP 1 Score: 273.9 bits (699), Expect = 9.8e-70
Identity = 132/136 (97.06%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 39  GDKYYFHKQCRNRSVLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYR 98
           GDKYYFHKQCRNRS LMM+SVAELGKGGGLLEKP IEKTTPGRESEFDVRKSRKTSPPYR
Sbjct: 23  GDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPAIEKTTPGRESEFDVRKSRKTSPPYR 82

Query: 99  VLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL 158
           VLLHNDN+NKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL
Sbjct: 83  VLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL 142

Query: 159 RGNGLLSSIEPASDGC 175
           RGNGLLSSIEPASDGC
Sbjct: 143 RGNGLLSSIEPASDGC 158

[Close]

BLAST of PI0013405 vs. NCBI nr
Match: XP_022994956.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 266.5 bits (680), Expect = 1.6e-67
Identity = 128/136 (94.12%), Postives = 133/136 (97.79%), Query Frame = 0


Query: 39  GDKYYFHKQCRNRSVLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYR 98
           GDKYYFHKQCRNRS+L MLSVAELGKGGGLLEKPT EKTTPGRESEF+VRKSRK +PPYR
Sbjct: 23  GDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPTTEKTTPGRESEFNVRKSRKIAPPYR 82

Query: 99  VLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL 158
           VLLHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL
Sbjct: 83  VLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL 142

Query: 159 RGNGLLSSIEPASDGC 175
           RGNGLLSSIEPASDGC
Sbjct: 143 RGNGLLSSIEPASDGC 158

[Close]

BLAST of PI0013405 vs. TAIR 10
Match: AT1G68660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 218.0 bits (554), Expect = 5.9e-57
Identity = 107/138 (77.54%), Postives = 120/138 (86.96%), Query Frame = 0


Query: 39  GDKYYFHK-QCRNRSVLMMLSV-AELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPP 98
           GDK+   K  C NRS+LM LS  A LGKGGG+L+KP IEKTTPGRESEFD+RKS+K +PP
Sbjct: 22  GDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPIIEKTTPGRESEFDLRKSKKIAPP 81

Query: 99  YRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCM 158
           YRV+LHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQEAH NG+AVVI+CAQ DAE HCM
Sbjct: 82  YRVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNIMQEAHINGLAVVIVCAQADAEQHCM 141

Query: 159 QLRGNGLLSSIEPASDGC 175
           QLRGNGLLSS+EP   GC
Sbjct: 142 QLRGNGLLSSVEPDGGGC 159

[Close]

BLAST of PI0013405 vs. TAIR 10
Match: AT1G68660.2 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 149.1 bits (375), Expect = 3.4e-36
Identity = 81/138 (58.70%), Postives = 91/138 (65.94%), Query Frame = 0


Query: 39  GDKYYFHK-QCRNRSVLMMLSV-AELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPP 98
           GDK+   K  C NRS+LM LS  A LGKGGG+L+KP IEKTTPGRESEFD+RKS+K +PP
Sbjct: 22  GDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPIIEKTTPGRESEFDLRKSKKIAPP 81

Query: 99  YRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCM 158
           YRV+LHNDN+NKREYVVQVLMK                               DAE HCM
Sbjct: 82  YRVILHNDNFNKREYVVQVLMK------------------------------ADAEQHCM 129

Query: 159 QLRGNGLLSSIEPASDGC 175
           QLRGNGLLSS+EP   GC
Sbjct: 142 QLRGNGLLSSVEPDGGGC 129

The following BLAST results are available for this feature:

BLAST of PI0013405 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SX29	8.4e-56	77.54	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis t...	[more]
A0A2K3CNL6	2.1e-22	53.21	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Chlamydomonas...	[more]
Q31QE7	9.0e-18	56.96	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (stra...	[more]
Q5N3U1	4.2e-15	54.79	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATC...	[more]
Q3AUR5	1.4e-13	43.14	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain CC9...	[more]

BLAST of PI0013405 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C511	1.2e-70	97.79	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 ...	[more]
A0A1S3C561	1.2e-70	97.79	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucumis ...	[more]
A0A0A0LSY6	4.7e-70	97.06	ClpS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G042210 PE=3 S...	[more]
A0A6J1K0P0	7.6e-68	94.12	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbit...	[more]
A0A6J1GS56	2.9e-67	93.38	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Cucurbita mos...	[more]

BLAST of PI0013405 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038894047.1	8.9e-71	99.26	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Benincasa ...	[more]
XP_008456997.1	2.6e-70	97.79	PREDICTED: ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like ...	[more]
XP_022136971.1	2.6e-70	97.79	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 ...	[more]
XP_004137466.1	9.8e-70	97.06	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucumis sativus...	[more]
XP_022994956.1	1.6e-67	94.12	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita ...	[more]

BLAST of PI0013405 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68660.1	5.9e-57	77.54	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]
AT1G68660.2	3.4e-36	58.70	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 91..169 e-value: 2.5E-21 score: 77.3
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 91..168
IPR003769	Adaptor protein ClpS, core	PFAM	PF02617	ClpS	coord: 93..160 e-value: 1.3E-18 score: 66.5
IPR022935	ATP-dependent Clp protease adaptor protein ClpS	PANTHER	PTHR33473	ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS1, CHLOROPLASTIC	coord: 35..174
IPR022935	ATP-dependent Clp protease adaptor protein ClpS	HAMAP	MF_00302	ClpS	coord: 77..171 score: 15.159029
None	No IPR available	PANTHER	PTHR33473:SF14	ATP-DEPENDENT CLP PROTEASE ADAPTOR PROTEIN CLPS	coord: 35..174

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0013405.3	PI0013405.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030163	protein catabolic process
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008233	peptidase activity