PI0013295 (gene) Melon (PI 482460) v1

Overview


Name	PI0013295
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Reverse transcriptase domain-containing protein
Location	chr09: 9270613 .. 9271909 (+)
RNA-Seq Expression	PI0013295
Synteny	PI0013295

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGACCCTGGCCTTGCCAGGAAACCTCTTGCTCCGCTTATACTTGAGCGAACAAGAGAAAAACTTGTACGTTAACGACATATTATTAGAGTCAGCAACGCGGAAGTAGGAGTAACATCATCGCATAACCATAGTCCTACCGCCTAATTTATCATCATTTTACCATCGCATACTATAGACCCTTTAAGTTGTATCTCGAACATTGATCCTTGTATGTCTCCACATACAGTTCAAGACTTATCAAACAACTTAGGATGTTAGTTTATTGGATTTAGGTTATTAAGACAAAATTGATAATATAATCAATAACGCTTTATTGAAATTATAATAATAACACTTTATTAATAACGGTTAATGAATTACATTTACTATCTACGAGTTTTAGGATATAAAACCCAATAGAGATTACTCTGGTTGGTCGATTCCGGGTGTTGTCATAGGTGACTTTAATGCTATGCGAGTGCACTTTGAAGCTTGCGGTGGGAGTCCGATTTCTTGTGATATGGAGGAGTTTAATCTTGCTATTCGTGAGGCTGACTTGGTTGAGTCGTCTATTCAGGGTAACTGGTTCACGTGGACGAGTAAGGTGCGTGGTTCTGGTTGGTTACATTGGCTTGATTGTATTTTGGTTAATGAGCACTAGTTAGCTGCTTGGCCTAGTTTGCGTGTTTCTATCCTACCCGGGGTATTTCTAATCATTCCCCTATTTTATTCTTTCCTGGTATTGAGCAACGAGAGCATGTTGTGTCCTTTTGTTTCTTTAACCATTGGGTGGAGGATCCTTCATTCAGTGATGTGGTGTTTTCGGTTTAGGTGAGAAGGATTGGTGTTTCTCTGTTAGTGAGTCTTATGCGAAATTTACATGACCTTAAGCCTGTCCTTCGTAGACATTTTGGTAGCCATATTACGAACCTTAGTGAGGAGGTACGCTTTGCTAAAGAGGCTATGGATAGGGCCCAGCGTGAGGTTGAGCGGGATCCTGAGTCTGTTGAGTTGAGTCGGCTTGCTGGGCTTGCTACTAAGGCTTTCTAGTCGTCTATTTGTTGGGAAGAAGCCTCTCCTCGTCATAAATCACGGATTAGGTGGTTGGAGCTTGGTGATCAGAATTTTGCCTTTTTTCATCGTTCAGTTCGTTCCCATATTTGTCATAATAACCTGCTTTCTGTTGTGGATTCTGAGGGTATACGAGTGATGTCCCATCATGGGTTGATACAGGTGGCGGTTAAATTTTTTCGTAATAGTTTGGGTTCCCAGGTGATTGGCTATAGGGAGCTCTCTCCGCTGCTGGAGGAGG

mRNA sequence

ATGTTCGACCCTGGCCTTGCCAGGAAACCTCTTGCTCCGCTTATACTTGAGCGAACAAGAGAAAAACTTGATATAAAACCCAATAGAGATTACTCTGGTTGGTCGATTCCGGGTGTTGTCATAGGTGACTTTAATGCTATGCGAGTGCACTTTGAAGCTTGCGGTGGGAGTCCGATTTCTTGTGATATGGAGGAGTTTAATCTTGCTATTCGTGAGGCTGACTTGGTTGAGTCGTCTATTCAGGGTAACTGGTTCACGTGGACGAGTAAGGTGAGAAGGATTGGTGTTTCTCTGTTAGTGAGTCTTATGCGAAATTTACATGACCTTAAGCCTGTCCTTCGTAGACATTTTGGTAGCCATATTACGAACCTTAGTGAGGAGGTACGCTTTGCTAAAGAGGCTATGGATAGGGCCCAGCGTGAGGTTGAGCGGGATCCTGAGTCTGTTGAGTTGAGTCGGCTTGCTGGGCTTGCTACTAAGGCTTTCTAGTCGTCTATTTGTTGGGAAGAAGCCTCTCCTCGTCATAAATCACGGATTAGGTGGTTGGAGCTTGGTGATCAGAATTTTGCCTTTTTTCATCGTTCAGTTCGTTCCCATATTTGTCATAATAACCTGCTTTCTGTTGTGGATTCTGAGGGTATACGAGTGATGTCCCATCATGGGTTGATACAGGTGGCGGTTAAATTTTTTCGTAATAGTTTGGGTTCCCAGGTGATTGGCTATAGGGAGCTCTCTCCGCTGCTGGAGGAGG

Coding sequence (CDS)

ATGTTCGACCCTGGCCTTGCCAGGAAACCTCTTGCTCCGCTTATACTTGAGCGAACAAGAGAAAAACTTGATATAAAACCCAATAGAGATTACTCTGGTTGGTCGATTCCGGGTGTTGTCATAGGTGACTTTAATGCTATGCGAGTGCACTTTGAAGCTTGCGGTGGGAGTCCGATTTCTTGTGATATGGAGGAGTTTAATCTTGCTATTCGTGAGGCTGACTTGGTTGAGTCGTCTATTCAGGGTAACTGGTTCACGTGGACGAGTAAGGTGAGAAGGATTGGTGTTTCTCTGTTAGTGAGTCTTATGCGAAATTTACATGACCTTAAGCCTGTCCTTCGTAGACATTTTGGTAGCCATATTACGAACCTTAGTGAGGAGGTACGCTTTGCTAAAGAGGCTATGGATAGGGCCCAGCGTGAGGTTGAGCGGGATCCTGAGTCTGTTGAGTTGAGTCGGCTTGCTGGGCTTGCTACTAAGGCTTTCTAG

Protein sequence

MFDPGLARKPLAPLILERTREKLDIKPNRDYSGWSIPGVVIGDFNAMRVHFEACGGSPISCDMEEFNLAIREADLVESSIQGNWFTWTSKVRRIGVSLLVSLMRNLHDLKPVLRRHFGSHITNLSEEVRFAKEAMDRAQREVERDPESVELSRLAGLATKAF

Homology

[Close]

BLAST of PI0013295 vs. ExPASy TrEMBL
Match: A0A5D3DXQ8 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001370 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.5e-41
Identity = 96/157 (61.15%), Postives = 111/157 (70.70%), Query Frame = 0


Query: 33  GWSIPGVVIGDFNAMRVHFEACGGSPISCDMEEFNLAIREADLVESSIQGNWFTWTSKVR 92
           GWS PG+V+GDFNA+RVH EA GGSPI  +ME+F+LAIR+ADLVE S+QGNWFTWTSK R
Sbjct: 303 GWSSPGMVMGDFNAIRVHSEAFGGSPIQGEMEDFDLAIRDADLVEPSVQGNWFTWTSKNR 362

Query: 93  RI---------------------------GVSLLVSLMRNLHDLKPVLRRHFGSHITNLS 152
           R+                           GVS LVSL+RNL  LK  +RRHFG HI +LS
Sbjct: 363 RVVSFRFFNHWMEDPSFIEVVSRMWGRNEGVSPLVSLIRNLQHLKSTIRRHFGRHIQSLS 422

Query: 153 EEVRFAKEAMDRAQREVERDPESVELSRLAGLATKAF 163
           EEVR AKEAMDRAQREV+R+P S  LSR AGLAT+AF
Sbjct: 423 EEVRNAKEAMDRAQREVKRNPMSDVLSRQAGLATEAF 459

[Close]

BLAST of PI0013295 vs. ExPASy TrEMBL
Match: A0A5A7U4M4 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold61G001420 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.5e-41
Identity = 96/157 (61.15%), Postives = 111/157 (70.70%), Query Frame = 0


Query: 33  GWSIPGVVIGDFNAMRVHFEACGGSPISCDMEEFNLAIREADLVESSIQGNWFTWTSKVR 92
           GWS PG+V+GDFNA+RVH EA GGSPI  +ME+F+LAIR+ADLVE S+QGNWFTWTSK R
Sbjct: 303 GWSSPGMVMGDFNAIRVHSEAFGGSPIQGEMEDFDLAIRDADLVEPSVQGNWFTWTSKNR 362

Query: 93  RI---------------------------GVSLLVSLMRNLHDLKPVLRRHFGSHITNLS 152
           R+                           GVS LVSL+RNL  LK  +RRHFG HI +LS
Sbjct: 363 RVVSFRFFNHWMEDPSFIEVVSRMWGRNEGVSPLVSLIRNLQHLKSTIRRHFGRHIQSLS 422

Query: 153 EEVRFAKEAMDRAQREVERDPESVELSRLAGLATKAF 163
           EEVR AKEAMDRAQREV+R+P S  LSR AGLAT+AF
Sbjct: 423 EEVRNAKEAMDRAQREVKRNPMSDVLSRQAGLATEAF 459

[Close]

BLAST of PI0013295 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 2.9e-37
Identity = 94/177 (53.11%), Postives = 106/177 (59.89%), Query Frame = 0


Query: 32  SGWSIPGVVIGDFNAMRVHFEACGGSPISCDMEEFNLAIREADLVESSIQGNWFTWTSKV 91
           S WS P VV+GDFNA+RVHFEA GGSPI  +ME+F+LA R+ADLVE S+QGNWFTWTSKV
Sbjct: 398 SCWSSPEVVMGDFNAIRVHFEAFGGSPIQGEMEDFDLATRDADLVEPSVQGNWFTWTSKV 457

Query: 92  ----------------------------------------------RRIGVSLLVSLMRN 151
                                                         R  GVS LVSLMRN
Sbjct: 458 HGSGMLRRLDRILVNDEWLSAWPTLLVLQSLVEDPSFIEVVARMWGRHEGVSPLVSLMRN 517

Query: 152 LHDLKPVLRRHFGSHITNLSEEVRFAKEAMDRAQREVERDPESVELSRLAGLATKAF 163
           L +LKP LRR FG HI +L+EEV  AKE MDRAQREVE +P S  LSR  GLAT+AF
Sbjct: 518 LQNLKPTLRRRFGRHIQSLNEEVHIAKENMDRAQREVEHNPMSDVLSRQVGLATEAF 574

[Close]

BLAST of PI0013295 vs. ExPASy TrEMBL
Match: A0A5A7TZS0 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19358G00020 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.2e-35
Identity = 98/207 (47.34%), Postives = 108/207 (52.17%), Query Frame = 0


Query: 32  SGWSIPGVVIGDFNAMRVHFEACGGSPISCDMEEFNLAIREADLVESSIQGNWFTWTSKV 91
           S WS  GVV+GDFNA+RVH EA GGSPI  +MEEF+LAIR+ADLVE S+QGNWFTWTSKV
Sbjct: 92  SAWSSLGVVMGDFNAIRVHSEAFGGSPIQGEMEEFDLAIRDADLVEPSVQGNWFTWTSKV 151

Query: 92  ------------------------------------------------------------ 151
                                                                       
Sbjct: 152 QGSGMLRRLDRVLVNDEWLSAWPTMRINVLPWGISDHSPILFYPSFQVNSRVVSFRFFNH 211

Query: 152 ----------------RRIGVSLLVSLMRNLHDLKPVLRRHFGSHITNLSEEVRFAKEAM 163
                           R  GVSLLVSLMRNLH LKP+LRR FG HI +LSEEV  AKEAM
Sbjct: 212 WVEEPSFIEVVARMWSRHEGVSLLVSLMRNLHHLKPILRRQFGRHIKSLSEEVHIAKEAM 271

[Close]

BLAST of PI0013295 vs. ExPASy TrEMBL
Match: A0A5A7V275 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G00430 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 4.6e-35
Identity = 96/207 (46.38%), Postives = 107/207 (51.69%), Query Frame = 0


Query: 32  SGWSIPGVVIGDFNAMRVHFEACGGSPISCDMEEFNLAIREADLVESSIQGNWFTWTSKV 91
           S WS PGVV+GDFNA+RVH EA GGSPI  +ME+F+LAIR+ADLVE S+QGNWFTWTSKV
Sbjct: 287 SAWSSPGVVMGDFNAIRVHSEAFGGSPIQGEMEDFDLAIRDADLVEPSVQGNWFTWTSKV 346

Query: 92  ------------------------------------------------------------ 151
                                                                       
Sbjct: 347 HGSGMLRRLDRVLVNDAWLSAWPTMLVNVLPWGISDHSPILFYPSFQLNSKVVSFRFFNH 406

Query: 152 ----------------RRIGVSLLVSLMRNLHDLKPVLRRHFGSHITNLSEEVRFAKEAM 163
                           R  GVS LVSLMRNLH LKP LRR FG HI +LSEEV  AKEAM
Sbjct: 407 WVEDPSFIEVVARMWSRHEGVSPLVSLMRNLHHLKPTLRRQFGRHIQSLSEEVHIAKEAM 466

[Close]

BLAST of PI0013295 vs. NCBI nr
Match: TYK28312.1 (uncharacterized protein E5676_scaffold600G001370 [Cucumis melo var. makuwa])

HSP 1 Score: 179.1 bits (453), Expect = 3.1e-41
Identity = 96/157 (61.15%), Postives = 111/157 (70.70%), Query Frame = 0


Query: 33  GWSIPGVVIGDFNAMRVHFEACGGSPISCDMEEFNLAIREADLVESSIQGNWFTWTSKVR 92
           GWS PG+V+GDFNA+RVH EA GGSPI  +ME+F+LAIR+ADLVE S+QGNWFTWTSK R
Sbjct: 303 GWSSPGMVMGDFNAIRVHSEAFGGSPIQGEMEDFDLAIRDADLVEPSVQGNWFTWTSKNR 362

Query: 93  RI---------------------------GVSLLVSLMRNLHDLKPVLRRHFGSHITNLS 152
           R+                           GVS LVSL+RNL  LK  +RRHFG HI +LS
Sbjct: 363 RVVSFRFFNHWMEDPSFIEVVSRMWGRNEGVSPLVSLIRNLQHLKSTIRRHFGRHIQSLS 422

Query: 153 EEVRFAKEAMDRAQREVERDPESVELSRLAGLATKAF 163
           EEVR AKEAMDRAQREV+R+P S  LSR AGLAT+AF
Sbjct: 423 EEVRNAKEAMDRAQREVKRNPMSDVLSRQAGLATEAF 459

[Close]

BLAST of PI0013295 vs. NCBI nr
Match: KAA0048521.1 (uncharacterized protein E6C27_scaffold61G001420 [Cucumis melo var. makuwa])

HSP 1 Score: 179.1 bits (453), Expect = 3.1e-41
Identity = 96/157 (61.15%), Postives = 111/157 (70.70%), Query Frame = 0


Query: 33  GWSIPGVVIGDFNAMRVHFEACGGSPISCDMEEFNLAIREADLVESSIQGNWFTWTSKVR 92
           GWS PG+V+GDFNA+RVH EA GGSPI  +ME+F+LAIR+ADLVE S+QGNWFTWTSK R
Sbjct: 303 GWSSPGMVMGDFNAIRVHSEAFGGSPIQGEMEDFDLAIRDADLVEPSVQGNWFTWTSKNR 362

Query: 93  RI---------------------------GVSLLVSLMRNLHDLKPVLRRHFGSHITNLS 152
           R+                           GVS LVSL+RNL  LK  +RRHFG HI +LS
Sbjct: 363 RVVSFRFFNHWMEDPSFIEVVSRMWGRNEGVSPLVSLIRNLQHLKSTIRRHFGRHIQSLS 422

Query: 153 EEVRFAKEAMDRAQREVERDPESVELSRLAGLATKAF 163
           EEVR AKEAMDRAQREV+R+P S  LSR AGLAT+AF
Sbjct: 423 EEVRNAKEAMDRAQREVKRNPMSDVLSRQAGLATEAF 459

[Close]

BLAST of PI0013295 vs. NCBI nr
Match: KAA0062888.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK22520.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 164.9 bits (416), Expect = 6.0e-37
Identity = 94/177 (53.11%), Postives = 106/177 (59.89%), Query Frame = 0


Query: 32  SGWSIPGVVIGDFNAMRVHFEACGGSPISCDMEEFNLAIREADLVESSIQGNWFTWTSKV 91
           S WS P VV+GDFNA+RVHFEA GGSPI  +ME+F+LA R+ADLVE S+QGNWFTWTSKV
Sbjct: 398 SCWSSPEVVMGDFNAIRVHFEAFGGSPIQGEMEDFDLATRDADLVEPSVQGNWFTWTSKV 457

Query: 92  ----------------------------------------------RRIGVSLLVSLMRN 151
                                                         R  GVS LVSLMRN
Sbjct: 458 HGSGMLRRLDRILVNDEWLSAWPTLLVLQSLVEDPSFIEVVARMWGRHEGVSPLVSLMRN 517

Query: 152 LHDLKPVLRRHFGSHITNLSEEVRFAKEAMDRAQREVERDPESVELSRLAGLATKAF 163
           L +LKP LRR FG HI +L+EEV  AKE MDRAQREVE +P S  LSR  GLAT+AF
Sbjct: 518 LQNLKPTLRRRFGRHIQSLNEEVHIAKENMDRAQREVEHNPMSDVLSRQVGLATEAF 574

[Close]

BLAST of PI0013295 vs. NCBI nr
Match: KAA0046851.1 (uncharacterized protein E6C27_scaffold19358G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 159.5 bits (402), Expect = 2.5e-35
Identity = 98/207 (47.34%), Postives = 108/207 (52.17%), Query Frame = 0


Query: 32  SGWSIPGVVIGDFNAMRVHFEACGGSPISCDMEEFNLAIREADLVESSIQGNWFTWTSKV 91
           S WS  GVV+GDFNA+RVH EA GGSPI  +MEEF+LAIR+ADLVE S+QGNWFTWTSKV
Sbjct: 92  SAWSSLGVVMGDFNAIRVHSEAFGGSPIQGEMEEFDLAIRDADLVEPSVQGNWFTWTSKV 151

Query: 92  ------------------------------------------------------------ 151
                                                                       
Sbjct: 152 QGSGMLRRLDRVLVNDEWLSAWPTMRINVLPWGISDHSPILFYPSFQVNSRVVSFRFFNH 211

Query: 152 ----------------RRIGVSLLVSLMRNLHDLKPVLRRHFGSHITNLSEEVRFAKEAM 163
                           R  GVSLLVSLMRNLH LKP+LRR FG HI +LSEEV  AKEAM
Sbjct: 212 WVEEPSFIEVVARMWSRHEGVSLLVSLMRNLHHLKPILRRQFGRHIKSLSEEVHIAKEAM 271

[Close]

BLAST of PI0013295 vs. NCBI nr
Match: XP_008466769.1 (PREDICTED: uncharacterized protein LOC103504100 [Cucumis melo])

HSP 1 Score: 157.5 bits (397), Expect = 9.5e-35
Identity = 96/207 (46.38%), Postives = 107/207 (51.69%), Query Frame = 0


Query: 32  SGWSIPGVVIGDFNAMRVHFEACGGSPISCDMEEFNLAIREADLVESSIQGNWFTWTSKV 91
           S WS PGVV+GDFNA+RVH EA GGSPI  +ME+F+LAIR+ADLVE S+QGNWFTWTSKV
Sbjct: 304 SAWSSPGVVMGDFNAIRVHSEAFGGSPIQGEMEDFDLAIRDADLVEPSVQGNWFTWTSKV 363

Query: 92  ------------------------------------------------------------ 151
                                                                       
Sbjct: 364 HGSGMLRRLDRVLVNDAWLSAWPTMLVNVLPWGISDHSPILFYPSFQLNSKVVSFRFFNH 423

Query: 152 ----------------RRIGVSLLVSLMRNLHDLKPVLRRHFGSHITNLSEEVRFAKEAM 163
                           R  GVS LVSLMRNLH LKP LRR FG HI +LSEEV  AKEAM
Sbjct: 424 WVEDPSFIEVVARMWSRHEGVSPLVSLMRNLHHLKPTLRRQFGRHIQSLSEEVHIAKEAM 483

The following BLAST results are available for this feature:

BLAST of PI0013295 vs.


Match Name	E-value	Identity	Description

BLAST of PI0013295 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DXQ8	1.5e-41	61.15	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7U4M4	1.5e-41	61.15	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7V5J2	2.9e-37	53.11	Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak...	[more]
A0A5A7TZS0	1.2e-35	47.34	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7V275	4.6e-35	46.38	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18...	[more]

BLAST of PI0013295 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK28312.1	3.1e-41	61.15	uncharacterized protein E5676_scaffold600G001370 [Cucumis melo var. makuwa]	[more]
KAA0048521.1	3.1e-41	61.15	uncharacterized protein E6C27_scaffold61G001420 [Cucumis melo var. makuwa]	[more]
KAA0062888.1	6.0e-37	53.11	non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw...	[more]
KAA0046851.1	2.5e-35	47.34	uncharacterized protein E6C27_scaffold19358G00020 [Cucumis melo var. makuwa]	[more]
XP_008466769.1	9.5e-35	46.38	PREDICTED: uncharacterized protein LOC103504100 [Cucumis melo]	[more]

BLAST of PI0013295 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 121..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0013295.1	PI0013295.1	mRNA