Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTCAGTGCGAGGCAGAGGAAGAGTAAGCTCTACCTCTTCAAAGGGCAGTCGCCCATCTTCTTCACAAAATCCTGCACCCTCACCTATGAGTGCAGATCAATATGCAATGGATTTGGGGTTTACTACGGTAACCCGATCTAAAGCAAGATCGTCCGGCATACGGATTGAATCTCCCACGGAGTCTTCCACTCCACCTAGGCCTTCGGCCAACCTTGTCCGTCCTTCTGGCGGAATAACCCAAATGAGGCCTCCTGCCTCTCCTTTGTCAAATTTGGAGTCATCAACTCCACCCACAACATACTCTCAGGCCGTTGCACCAGAAAAACGGTTCATACCAAGGCCCGAGATCAAAACTTATTTTCAAAAGCAAGTGGTAATCTATGATCCTATCATAGAACCAGAATATCAAAGTCTCACTATCGATGAGACAGTTTCAAAAATTTTCCCTGAGGGCTTTAATTTCCTTCCTGAAGACCTCAGAAAAACAAGGAAATTTTACGAGTTTATTCTAGTAGACACAAAGTCTGTAGAAATAACTCACGTGCCCGATAAAAACGATGCTTCAAAAATCGCTTATTCAAAATTAAAAATTTTCAAAGCGATAAATCCAACCCATTGGAACCAAGGAATTTTTACAGAAAAATCCTTTTCAAAACCTTTCGTACCTCAATCCTACTCTTACCAGGATTACATCAAAGCTTGGTTTAGAGTTGTTTGGTATTCTAGCAGAAACCATTCATGGTTTATTTCTTTCTGCCAGAACGCCTACAAGATAAATTTTCCACTATGGTTTATTCAATGGTGGAATAATTTTGGTCTCACAGACGACATATTGCCAACACCCATTCAAGAGTCATATTTTTATTTCACAAGAACAATCCAGAAAAATTCATTTCACAATTCAATGAGATTCTGTCTCTACTTTCAAATTCCATGGATATTTTGCTGGAGTTTCAACACAGCTTCATATCCACAATACAAGATGTTAGTCAAAAATCTCAAAATTAAATGGTGGGATAAATACAATTTCCAGCATGCCACCATCAAACATATGAAAGAGTGGTTCGCAGAGAACGGCTATCTTCAAGATATCGATCAGAAAAAGAACGCAGAGTTCCTGAACGATAAATCAAAACTTTTAGCAGCACTGGCACAGGCAACAACTGATGCCGATTTTCAAAGATTACTATCAACGGCAGTAAATGCCTCTACAAGCTCAAAATCAGCGTCTTCCTCCATACAGGAAGATGACGAATTGGCAAGTCCGGAATACGATCTAAATGATCCGTTCCTCGACTCACAGCCCATGTGA
mRNA sequence
ATGAGTTCAGTGCGAGGCAGAGGAAGAGTAAGCTCTACCTCTTCAAAGGGCAGTCGCCCATCTTCTTCACAAAATCCTGCACCCTCACCTATGAGTGCAGATCAATATGCAATGGATTTGGGGTTTACTACGGTAACCCGATCTAAAGCAAGATCGTCCGGCATACGGATTGAATCTCCCACGGAGTCTTCCACTCCACCTAGGCCTTCGGCCAACCTTGTCCGTCCTTCTGGCGGAATAACCCAAATGAGGCCTCCTGCCTCTCCTTTGTCAAATTTGGAGTCATCAACTCCACCCACAACATACTCTCAGGCCGTTGCACCAGAAAAACGGTTCATACCAAGGCCCGAGATCAAAACTTATTTTCAAAAGCAAGTGGTAATCTATGATCCTATCATAGAACCAGAATATCAAAGTCTCACTATCGATGAGACAGTTTCAAAAATTTTCCCTGAGGGCTTTAATTTCCTTCCTGAAGACCTCAGAAAAACAAGGAAATTTTACGAGTTTATTCTAGTAGACACAAAGTCTGTAGAAATAACTCACGTGCCCGATAAAAACGATGCTTCAAAAATCGCTTATTCAAAATTAAAAATTTTCAAAGCGATAAATCCAACCCATTGGAACCAAGGAATTTTTACAGAAAAATCCTTTTCAAAACCTTTCGTACCTCAATCCTACTCTTACCAGGATTACATCAAAGCTTGTTTCAACACAGCTTCATATCCACAATACAAGATGTTAGTCAAAAATCTCAAAATTAAATGGTGGGATAAATACAATTTCCAGCATGCCACCATCAAACATATGAAAGAGTGGTTCGCAGAGAACGGCTATCTTCAAGATATCGATCAGAAAAAGAACGCAGAGTTCCTGAACGATAAATCAAAACTTTTAGCAGCACTGGCACAGGCAACAACTGATGCCGATTTTCAAAGATTACTATCAACGGCAGTAAATGCCTCTACAAGCTCAAAATCAGCGTCTTCCTCCATACAGGAAGATGACGAATTGGCAAGTCCGGAATACGATCTAAATGATCCGTTCCTCGACTCACAGCCCATGTGA
Coding sequence (CDS)
ATGAGTTCAGTGCGAGGCAGAGGAAGAGTAAGCTCTACCTCTTCAAAGGGCAGTCGCCCATCTTCTTCACAAAATCCTGCACCCTCACCTATGAGTGCAGATCAATATGCAATGGATTTGGGGTTTACTACGGTAACCCGATCTAAAGCAAGATCGTCCGGCATACGGATTGAATCTCCCACGGAGTCTTCCACTCCACCTAGGCCTTCGGCCAACCTTGTCCGTCCTTCTGGCGGAATAACCCAAATGAGGCCTCCTGCCTCTCCTTTGTCAAATTTGGAGTCATCAACTCCACCCACAACATACTCTCAGGCCGTTGCACCAGAAAAACGGTTCATACCAAGGCCCGAGATCAAAACTTATTTTCAAAAGCAAGTGGTAATCTATGATCCTATCATAGAACCAGAATATCAAAGTCTCACTATCGATGAGACAGTTTCAAAAATTTTCCCTGAGGGCTTTAATTTCCTTCCTGAAGACCTCAGAAAAACAAGGAAATTTTACGAGTTTATTCTAGTAGACACAAAGTCTGTAGAAATAACTCACGTGCCCGATAAAAACGATGCTTCAAAAATCGCTTATTCAAAATTAAAAATTTTCAAAGCGATAAATCCAACCCATTGGAACCAAGGAATTTTTACAGAAAAATCCTTTTCAAAACCTTTCGTACCTCAATCCTACTCTTACCAGGATTACATCAAAGCTTGTTTCAACACAGCTTCATATCCACAATACAAGATGTTAGTCAAAAATCTCAAAATTAAATGGTGGGATAAATACAATTTCCAGCATGCCACCATCAAACATATGAAAGAGTGGTTCGCAGAGAACGGCTATCTTCAAGATATCGATCAGAAAAAGAACGCAGAGTTCCTGAACGATAAATCAAAACTTTTAGCAGCACTGGCACAGGCAACAACTGATGCCGATTTTCAAAGATTACTATCAACGGCAGTAAATGCCTCTACAAGCTCAAAATCAGCGTCTTCCTCCATACAGGAAGATGACGAATTGGCAAGTCCGGAATACGATCTAAATGATCCGTTCCTCGACTCACAGCCCATGTGA
Protein sequence
MSSVRGRGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTKSVEITHVPDKNDASKIAYSKLKIFKAINPTHWNQGIFTEKSFSKPFVPQSYSYQDYIKACFNTASYPQYKMLVKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQKKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNASTSSKSASSSIQEDDELASPEYDLNDPFLDSQPM
Homology
BLAST of PI0013162 vs. ExPASy TrEMBL
Match:
A0A5A7T5B0 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G002250 PE=4 SV=1)
HSP 1 Score: 265.4 bits (677), Expect = 3.4e-67
Identity = 152/337 (45.10%), Postives = 213/337 (63.20%), Query Frame = 0
Query: 31 MSADQYAMDLGFTTVTRSKARSSGIRIESPTESST-PPRPSANLVRPSGGITQMRPPASP 90
MSA+ YAMDL F V+R + S+ + ++SS+ PP PS L+RPSG T + ASP
Sbjct: 1 MSAENYAMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASP 60
Query: 91 LSNLESST---PPTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETV 150
++ S P++YSQ V P K F PRP I YF K ++ D IEPE+ ++ E
Sbjct: 61 AASSSRSVIPRNPSSYSQIVRP-KIFQPRPPINGYFTKTTMV-DLTIEPEFDGPSVQEVC 120
Query: 151 SKIFPEGFNFLPEDLRKTRKFYEFILVDTKSVEITHVPDKNDASKIAYSKLKIFKAINPT 210
S+IFP GFNFLPEDL KTR FYE+ILVD+KS EITHVPDKND SKI YSKL+IF+ + P+
Sbjct: 121 SQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPS 180
Query: 211 HWNQGIFTEKSFSKPFVPQSYSYQDYIKACFNTASYPQYKMLVKNLKIKWWDKYNFQHAT 270
+W QG+F + FS PF P SY+Y+DY KA + +K L K+L+IKWW+K+N+ H
Sbjct: 181 YWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYILGPLGNFKALSKSLRIKWWEKFNYSHLE 240
Query: 271 IKHMKEWFAENGYLQDIDQKKNAEFLNDKSKLLAALAQATTDADFQRLLSTAV------N 330
+ +K+WF N +LQD+ ++++ FL K+ +++ L A+T +F +++ V N
Sbjct: 241 VNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDN 300
Query: 331 ASTSSKSASSSIQEDDELASPEY---DLNDPFLDSQP 355
S + +SI D+L Y D+NDPFLD+QP
Sbjct: 301 DDLSEDISPASINNVDDLDYDPYEGLDINDPFLDTQP 335
BLAST of PI0013162 vs. ExPASy TrEMBL
Match:
A0A5A7TM80 (Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold592G00220 PE=4 SV=1)
HSP 1 Score: 263.5 bits (672), Expect = 1.3e-66
Identity = 141/178 (79.21%), Postives = 154/178 (86.52%), Query Frame = 0
Query: 1 MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIE 60
MSS +G RGR +STSSKG+RP SS N APSP+SADQYAMDLGFTTVTR +RS GI I
Sbjct: 1 MSSDKGSARGRTNSTSSKGNRPPSSSNSAPSPLSADQYAMDLGFTTVTRFISRSFGIWIG 60
Query: 61 SPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAVAPEKRFIPRPEI 120
SPTESSTPPRPS NL+RPS G+ QMRPPASP SN ESSTPPTTYSQAV P+KRF+PRPEI
Sbjct: 61 SPTESSTPPRPSTNLIRPSSGVVQMRPPASPSSNRESSTPPTTYSQAVTPDKRFVPRPEI 120
Query: 121 KTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTK 177
K+YFQK +V+YDPIIE EYQSLT +ETVSKIFPE FNFL EDLRKTRKFYEFIL DTK
Sbjct: 121 KSYFQKPIVVYDPIIELEYQSLTSEETVSKIFPEDFNFLLEDLRKTRKFYEFILADTK 178
BLAST of PI0013162 vs. ExPASy TrEMBL
Match:
E5GCE6 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)
HSP 1 Score: 238.0 bits (606), Expect = 5.9e-59
Identity = 126/167 (75.45%), Postives = 142/167 (85.03%), Query Frame = 0
Query: 1 MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIE 60
MSS +G RGR +STSSKG RPSSS N PSPMSA QY MDLGFT VTRS++R S I I
Sbjct: 1 MSSEKGSARGRTNSTSSKGHRPSSSSNSEPSPMSAYQYTMDLGFTIVTRSRSRLSSIWIG 60
Query: 61 SPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAVAPEKRFIPRPEI 120
SPTESSTPPRPS NL+RPSGG+ QMRPPASP SN ESSTPPTTYSQAV +KRF+PRPEI
Sbjct: 61 SPTESSTPPRPSVNLIRPSGGVIQMRPPASPSSNRESSTPPTTYSQAVTLDKRFVPRPEI 120
Query: 121 KTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTR 166
K+YFQK +V+YDPIIEPEYQSLT++E VSKIFP+ FNFLPEDL+K +
Sbjct: 121 KSYFQKSIVVYDPIIEPEYQSLTLEEMVSKIFPKDFNFLPEDLKKKK 167
BLAST of PI0013162 vs. ExPASy TrEMBL
Match:
A0A5A7U7T9 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00530 PE=4 SV=1)
HSP 1 Score: 236.9 bits (603), Expect = 1.3e-58
Identity = 149/357 (41.74%), Postives = 216/357 (60.50%), Query Frame = 0
Query: 11 SSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESST-PPRP 70
S T+ +P S+Q+ A SPMSA+ YAMDL F V+R + S+ + ++SS+ PP P
Sbjct: 35 SETTPSRGKP-SAQSSAHSPMSAENYAMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIP 94
Query: 71 SANLVRPSGGITQMRPPASPLSNLESST---PPTTYSQAVAPEKRFIPRPEIKTYFQKQV 130
S L+ PSG T + ASP ++ S P++YSQ V K F PRP I YF K
Sbjct: 95 STALLCPSGPTTPNKRVASPAASSSRSAISRNPSSYSQIVR-LKVFQPRPPINGYFTKTT 154
Query: 131 VIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTKSVEITHVPDK 190
++ D IEPE+ + E ++IFP FNFLPEDL KTR FYE+ILVD+KS EITHVPDK
Sbjct: 155 MV-DLTIEPEFDGPFVHEVCNQIFPHEFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDK 214
Query: 191 NDASKIAYSKLKIFKAINPTHWNQGIFTEKSFSKPFVPQSYSYQDYIKACFNTASYPQYK 250
ND SKI YSK +IF+ + P++W QG+F + FS PF P SY+Y+ +K
Sbjct: 215 NDPSKIIYSKFRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYR----------PSGNFK 274
Query: 251 MLVKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQKKNAEFLNDKSKLLAALAQAT 310
L K+L IKWW+K+N+ H + +K+WF N +LQ++ ++++ FL K+ +++ LA A+
Sbjct: 275 ALSKSLIIKWWEKFNYSHLEVNKIKDWFKANIHLQNMTRQEDETFLLTKNAVMSTLAGAS 334
Query: 311 TDADFQRLLSTAV------NASTSSKSASSSIQEDDELASPEY---DLNDPFLDSQP 355
T +F +++ V N ++ +S+ + D+L Y D+NDPFLD+QP
Sbjct: 335 TQQEFNFVVNNVVVNLSDDNDDLPEDASPASVNDVDDLDYDPYEGLDINDPFLDTQP 378
BLAST of PI0013162 vs. ExPASy TrEMBL
Match:
A0A5D3DX32 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003460 PE=4 SV=1)
HSP 1 Score: 235.0 bits (598), Expect = 5.0e-58
Identity = 165/444 (37.16%), Postives = 229/444 (51.58%), Query Frame = 0
Query: 11 SSTSSKGSRPS----SSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESST- 70
S SS G+ PS SQ+ APSPMSA+ YAMDL F V+R + S+ + ++SS+
Sbjct: 31 SVASSSGTTPSRKEFPSQSSAPSPMSAENYAMDLQFEQVSRRRQGSAKRTLTIQSDSSSL 90
Query: 71 PPRPSANLVRPSGGITQMRPPASP-LSNLESSTP--PTTYSQAVAPEKRFIPRPEIKTYF 130
PP PS L+RPSG T + ASP S+ S+ P P++YSQ V P K F PRP I YF
Sbjct: 91 PPIPSTELLRPSGPTTPNKRAASPGASSSRSAIPRNPSSYSQIVRP-KIFQPRPPINGYF 150
Query: 131 QKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTKSVEITH 190
K ++ D IEPE+ ++ E S+IFP GFNFLPEDL KTR FYE+ILVD+KS EITH
Sbjct: 151 TKTTMV-DLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITH 210
Query: 191 VPDKNDASKIAYSKLKIFKAINPTHWNQGIFTEKSFSKPFVPQSYSYQDYIKA------- 250
VPDKND SKI YSKL+IF+ + P++W QG+F + FS F SY+Y+DY KA
Sbjct: 211 VPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHSFKQPSYNYRDYTKAWYIVFWL 270
Query: 251 ------------------------------------------------------------ 310
Sbjct: 271 HAYNHFWFVTFCKQAYKMHFPNWFQNWWMYFGLSEEIFPVEVQRSYHFFQQSIYSSPLSK 330
Query: 311 --------------CFNTASYP--QYKMLVKNLKIKWWDKYNFQHATIKHMKEWFAENGY 355
C+N P +K L K+L+IKWW+K+N+ H + +K+WF N +
Sbjct: 331 TFRFALYFKISWIFCWNFQLGPSGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIH 390
BLAST of PI0013162 vs. NCBI nr
Match:
KAA0038028.1 (polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 265.4 bits (677), Expect = 7.1e-67
Identity = 152/337 (45.10%), Postives = 213/337 (63.20%), Query Frame = 0
Query: 31 MSADQYAMDLGFTTVTRSKARSSGIRIESPTESST-PPRPSANLVRPSGGITQMRPPASP 90
MSA+ YAMDL F V+R + S+ + ++SS+ PP PS L+RPSG T + ASP
Sbjct: 1 MSAENYAMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASP 60
Query: 91 LSNLESST---PPTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETV 150
++ S P++YSQ V P K F PRP I YF K ++ D IEPE+ ++ E
Sbjct: 61 AASSSRSVIPRNPSSYSQIVRP-KIFQPRPPINGYFTKTTMV-DLTIEPEFDGPSVQEVC 120
Query: 151 SKIFPEGFNFLPEDLRKTRKFYEFILVDTKSVEITHVPDKNDASKIAYSKLKIFKAINPT 210
S+IFP GFNFLPEDL KTR FYE+ILVD+KS EITHVPDKND SKI YSKL+IF+ + P+
Sbjct: 121 SQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPS 180
Query: 211 HWNQGIFTEKSFSKPFVPQSYSYQDYIKACFNTASYPQYKMLVKNLKIKWWDKYNFQHAT 270
+W QG+F + FS PF P SY+Y+DY KA + +K L K+L+IKWW+K+N+ H
Sbjct: 181 YWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYILGPLGNFKALSKSLRIKWWEKFNYSHLE 240
Query: 271 IKHMKEWFAENGYLQDIDQKKNAEFLNDKSKLLAALAQATTDADFQRLLSTAV------N 330
+ +K+WF N +LQD+ ++++ FL K+ +++ L A+T +F +++ V N
Sbjct: 241 VNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDN 300
Query: 331 ASTSSKSASSSIQEDDELASPEY---DLNDPFLDSQP 355
S + +SI D+L Y D+NDPFLD+QP
Sbjct: 301 DDLSEDISPASINNVDDLDYDPYEGLDINDPFLDTQP 335
BLAST of PI0013162 vs. NCBI nr
Match:
KAA0043136.1 (putative Retrotransposon protein [Cucumis melo var. makuwa] >TYK23922.1 putative Retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 263.5 bits (672), Expect = 2.7e-66
Identity = 141/178 (79.21%), Postives = 154/178 (86.52%), Query Frame = 0
Query: 1 MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIE 60
MSS +G RGR +STSSKG+RP SS N APSP+SADQYAMDLGFTTVTR +RS GI I
Sbjct: 1 MSSDKGSARGRTNSTSSKGNRPPSSSNSAPSPLSADQYAMDLGFTTVTRFISRSFGIWIG 60
Query: 61 SPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAVAPEKRFIPRPEI 120
SPTESSTPPRPS NL+RPS G+ QMRPPASP SN ESSTPPTTYSQAV P+KRF+PRPEI
Sbjct: 61 SPTESSTPPRPSTNLIRPSSGVVQMRPPASPSSNRESSTPPTTYSQAVTPDKRFVPRPEI 120
Query: 121 KTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTK 177
K+YFQK +V+YDPIIE EYQSLT +ETVSKIFPE FNFL EDLRKTRKFYEFIL DTK
Sbjct: 121 KSYFQKPIVVYDPIIELEYQSLTSEETVSKIFPEDFNFLLEDLRKTRKFYEFILADTK 178
BLAST of PI0013162 vs. NCBI nr
Match:
ADN34145.1 (hypothetical protein [Cucumis melo subsp. melo])
HSP 1 Score: 238.0 bits (606), Expect = 1.2e-58
Identity = 126/167 (75.45%), Postives = 142/167 (85.03%), Query Frame = 0
Query: 1 MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIE 60
MSS +G RGR +STSSKG RPSSS N PSPMSA QY MDLGFT VTRS++R S I I
Sbjct: 1 MSSEKGSARGRTNSTSSKGHRPSSSSNSEPSPMSAYQYTMDLGFTIVTRSRSRLSSIWIG 60
Query: 61 SPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAVAPEKRFIPRPEI 120
SPTESSTPPRPS NL+RPSGG+ QMRPPASP SN ESSTPPTTYSQAV +KRF+PRPEI
Sbjct: 61 SPTESSTPPRPSVNLIRPSGGVIQMRPPASPSSNRESSTPPTTYSQAVTLDKRFVPRPEI 120
Query: 121 KTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTR 166
K+YFQK +V+YDPIIEPEYQSLT++E VSKIFP+ FNFLPEDL+K +
Sbjct: 121 KSYFQKSIVVYDPIIEPEYQSLTLEEMVSKIFPKDFNFLPEDLKKKK 167
BLAST of PI0013162 vs. NCBI nr
Match:
KAA0050447.1 (polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 236.9 bits (603), Expect = 2.7e-58
Identity = 149/357 (41.74%), Postives = 216/357 (60.50%), Query Frame = 0
Query: 11 SSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESST-PPRP 70
S T+ +P S+Q+ A SPMSA+ YAMDL F V+R + S+ + ++SS+ PP P
Sbjct: 35 SETTPSRGKP-SAQSSAHSPMSAENYAMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIP 94
Query: 71 SANLVRPSGGITQMRPPASPLSNLESST---PPTTYSQAVAPEKRFIPRPEIKTYFQKQV 130
S L+ PSG T + ASP ++ S P++YSQ V K F PRP I YF K
Sbjct: 95 STALLCPSGPTTPNKRVASPAASSSRSAISRNPSSYSQIVR-LKVFQPRPPINGYFTKTT 154
Query: 131 VIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTKSVEITHVPDK 190
++ D IEPE+ + E ++IFP FNFLPEDL KTR FYE+ILVD+KS EITHVPDK
Sbjct: 155 MV-DLTIEPEFDGPFVHEVCNQIFPHEFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDK 214
Query: 191 NDASKIAYSKLKIFKAINPTHWNQGIFTEKSFSKPFVPQSYSYQDYIKACFNTASYPQYK 250
ND SKI YSK +IF+ + P++W QG+F + FS PF P SY+Y+ +K
Sbjct: 215 NDPSKIIYSKFRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYR----------PSGNFK 274
Query: 251 MLVKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQKKNAEFLNDKSKLLAALAQAT 310
L K+L IKWW+K+N+ H + +K+WF N +LQ++ ++++ FL K+ +++ LA A+
Sbjct: 275 ALSKSLIIKWWEKFNYSHLEVNKIKDWFKANIHLQNMTRQEDETFLLTKNAVMSTLAGAS 334
Query: 311 TDADFQRLLSTAV------NASTSSKSASSSIQEDDELASPEY---DLNDPFLDSQP 355
T +F +++ V N ++ +S+ + D+L Y D+NDPFLD+QP
Sbjct: 335 TQQEFNFVVNNVVVNLSDDNDDLPEDASPASVNDVDDLDYDPYEGLDINDPFLDTQP 378
BLAST of PI0013162 vs. NCBI nr
Match:
TYK28082.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])
HSP 1 Score: 235.0 bits (598), Expect = 1.0e-57
Identity = 165/444 (37.16%), Postives = 229/444 (51.58%), Query Frame = 0
Query: 11 SSTSSKGSRPS----SSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESST- 70
S SS G+ PS SQ+ APSPMSA+ YAMDL F V+R + S+ + ++SS+
Sbjct: 31 SVASSSGTTPSRKEFPSQSSAPSPMSAENYAMDLQFEQVSRRRQGSAKRTLTIQSDSSSL 90
Query: 71 PPRPSANLVRPSGGITQMRPPASP-LSNLESSTP--PTTYSQAVAPEKRFIPRPEIKTYF 130
PP PS L+RPSG T + ASP S+ S+ P P++YSQ V P K F PRP I YF
Sbjct: 91 PPIPSTELLRPSGPTTPNKRAASPGASSSRSAIPRNPSSYSQIVRP-KIFQPRPPINGYF 150
Query: 131 QKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTKSVEITH 190
K ++ D IEPE+ ++ E S+IFP GFNFLPEDL KTR FYE+ILVD+KS EITH
Sbjct: 151 TKTTMV-DLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITH 210
Query: 191 VPDKNDASKIAYSKLKIFKAINPTHWNQGIFTEKSFSKPFVPQSYSYQDYIKA------- 250
VPDKND SKI YSKL+IF+ + P++W QG+F + FS F SY+Y+DY KA
Sbjct: 211 VPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHSFKQPSYNYRDYTKAWYIVFWL 270
Query: 251 ------------------------------------------------------------ 310
Sbjct: 271 HAYNHFWFVTFCKQAYKMHFPNWFQNWWMYFGLSEEIFPVEVQRSYHFFQQSIYSSPLSK 330
Query: 311 --------------CFNTASYP--QYKMLVKNLKIKWWDKYNFQHATIKHMKEWFAENGY 355
C+N P +K L K+L+IKWW+K+N+ H + +K+WF N +
Sbjct: 331 TFRFALYFKISWIFCWNFQLGPSGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIH 390
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7T5B0 | 3.4e-67 | 45.10 | Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G002250 PE... | [more] |
| A0A5A7TM80 | 1.3e-66 | 79.21 | Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... | [more] |
| E5GCE6 | 5.9e-59 | 75.45 | Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1 | [more] |
| A0A5A7U7T9 | 1.3e-58 | 41.74 | Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00530 PE... | [more] |
| A0A5D3DX32 | 5.0e-58 | 37.16 | Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0038028.1 | 7.1e-67 | 45.10 | polyprotein [Cucumis melo var. makuwa] | [more] |
| KAA0043136.1 | 2.7e-66 | 79.21 | putative Retrotransposon protein [Cucumis melo var. makuwa] >TYK23922.1 putative... | [more] |
| ADN34145.1 | 1.2e-58 | 75.45 | hypothetical protein [Cucumis melo subsp. melo] | [more] |
| KAA0050447.1 | 2.7e-58 | 41.74 | polyprotein [Cucumis melo var. makuwa] | [more] |
| TYK28082.1 | 1.0e-57 | 37.16 | Retrotransposable element Tf2 [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
