PI0013058 (gene) Melon (PI 482460) v1

Overview


Name	PI0013058
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	transcription factor IIIA-like
Location	chr08: 22706067 .. 22708623 (+)
RNA-Seq Expression	PI0013058
Synteny	PI0013058

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGACATTCGAACCTCAAGACTTCGAGATTTGTAGAAATAGTTTGCCTTCTTCCCCAAGAAGAAGAACCCTTCTGGTAAAAGGTAGAAAATCTTCGTTTCAAACGATAGTACGGCTTCGGGATAATACCCTAATCTGTCTAATAACTACTTTAGTACGTTCACAAACTCCTAACATCAATTTACTCTCAGCTAACTTCGATTCTTTGTAAAACCAAAATCAAAATCAAAATCACGATCAAGATGCGTAATCAAACAAATCAATCAATGAATTTAAACACAGAACACTACACAAACCCTCGGTTTCTTTTCTTCGATTTTGGAAAGCGCTGGGTAATCTTTCAAATTGAATCTACCCTATTTCTTTGAATGCACCATTTATTCACCTGATTCATATTATAGATGGAGAGTGGAAACCCGAAAGACGATGAAGATGTTAAGGCAAAAGGGAACAAATCCAATATTTGCCAGGATTGTGGTGCTGATTTAAAAAAACTTGCTTACTTGAAGCAACACATGCAAAGCCATTCCTTCGAGGTATTTTTACACGTTTCCTGTAATTGTTCTTCTTTGGTTTGAATTGTCTGAGAGATATTGGTTCGAGTATAAGATATATGAGATGAATGGCTATGTTGAATATGTAGATGGACAGTCGATATAATGCCAAGGGGTATGTTAATTGGTTATCTAGATGCTTGCTTTTGGAATTCTATCTTCTTCACAGTTCTTATCATCTCACTAGTGGGGTTGAATTATGTGCTTGCCTTTATTGTTACACGGCTGTCTCTTTACGGAAGTAAATTTTTTGTTTGACAATAGCAGACTGGCAGTCAATTTTCATTGGCGGCTCTTCGACTTTGGCCATCAATTTTACGGTCCAATCTTTTTCTTCCATCGAAGGCGATTAGTTTTGCAGGAACAAATCCATAAATGTATTAACATAATGTGATCTGATCCTGGATATCTCAGCGTGAAGCATTGGATTCCACAACAAGAACTCCAAAATGCACGAGGTTGCATTTTCTTTCTTGATTGGATCAGTATCAGGTTGGGAGACCTCCTGAGAAGCTCCTTCAAGTGGGCCTCAGTCGCGCTACTATAATTTGAGGTTTGAAGTTTAGTTATTCAGAATTTTGGGAAGAGGTTTGCTAGTGAATAAATTTGAAGTTGACCAATATTATTGCATTATTTTGATATAGAGGCCTTATATTTGTTCAGTAGATGGTTGTCAATCCAGTTATAGAAGAAAGGATTATTTGACACGCCACCTTCTCCAGCACCAAGGAATAACATTCAAGTGTCCAATTGAGAGTTGTAGCCGTGATTTGCATATCTATCTAGTGTAAATAGACACTTGAAAGAATTCCATGATGATAATGCTCCTCCTGAAGTTGAATGTCAGAAACAGTTTGTTTGTCCAGAGGATGGATGTGGAAAGGTGTTTATATGCATCTCGACTGCCAAAGCATGAAGATTCTCGTGGTTAATTTCTATTTTTCTAATTTGCTCTAAATTTTGATTGTTTGATTCAAGATATCCATTTATCAATTTCAAATTTTACTGTACTGTAGTTAAGCTGTACTCAATAGAGGCACATTGAACTGCACCGGGTTGCATGAAAACATGCACCAACAAGCAATGCCTTACGGCTCATAGACAGTCCTGCCACAAGTACATATCTTGTGAGATTTGTGGGAAAAGAAAATTGAGAAAGAACATGAAACAGCATTTATGACAAAAGCACGAGAGCGAAGGTCTGCAAAAGACAGTTCAATGCACGCATGAGAGCTGTTGTGTAAGGTCTTTTCATCAGTAAGTAGCACAGACTTTGCAAATGCGTTTATGAGTGAAACTACTTTTAGCTGAGCTATAGGGCTTCCCAATTATTAATGTCTTTATTTGATATGTTCCCTTGTTTATAATGTCTCAGATTTCAAATCTCCGCCAAAATATGAAAGTTAAGCACTTGGGTCAAAAACCTTTTGCTTGTGGCTTTTCTGGTTGGAGCATGAGATTTGGCTACAAGCATGTTAGGGACAATCAAGAGAAAAATGGCCACCATGTTTTACACTAACATAAGTTTGCATTTAGAAAACTTTATATATTTATGTACATTTGACCTTTAAAAAGATTATTTAAGGTGCTTGTTACTCTGGTAATCAGGGGGATTTTGAAGTAGCTGATCAACAATCCCGCTCAAAGCCAAGGGGAGGACGAACAAGAAAATGTCCAACTGTCGAAATGCTTATATGGAAGCAGGTTACCCTCGCAGCATGGGATTTCACTATGGATGAAGGGTTCTAAGGCTTTTTTGTGAGTACTCAAACCTCTAACCTCTTTTGGTTGTGGACACATGCCTTATGAAGCTTGTTTGCTGACACTCTACTAGTAAGAAGTGGCCCCCTTTGTTAAAAATCCATGTTCATTACAAATATTTGGTGGCTAACCAATGTATAGAATGATAGAATCCGTATGTATAATTATACCCCAACGGAGAACGAAGAGAACAATGACAAACACTTAAGAGATGTGTTATCGTCTAGTGTGTTTAGTTTTTTC

mRNA sequence

GAGACATTCGAACCTCAAGACTTCGAGATTTGTAGAAATAGTTTGCCTTCTTCCCCAAGAAGAAGAACCCTTCTGGTAAAAGGTAGAAAATCTTCGTTTCAAACGATAGTACGGCTTCGGGATAATACCCTAATCTGTCTAATAACTACTTTAGTACGTTCACAAACTCCTAACATCAATTTACTCTCAGCTAACTTCGATTCTTTGTAAAACCAAAATCAAAATCAAAATCACGATCAAGATGCGTAATCAAACAAATCAATCAATGAATTTAAACACAGAACACTACACAAACCCTCGGTTTCTTTTCTTCGATTTTGGAAAGCGCTGGATGGAGAGTGGAAACCCGAAAGACGATGAAGATGTTAAGGCAAAAGGGAACAAATCCAATATTTGCCAGGATTGTGGTGCTGATTTAAAAAAACTTGCTTACTTGAAGCAACACATGCAAAGCCATTCCTTCGAGACTGGCAGTCAATTTTCATTGGCGGCTCTTCGACTTTGGCCATCAATTTTACGGTCCAATCTTTTTCTTCCATCGAAGGCGATTAGTTTTGCAGGAACAAATCCATAAATGTATTAACATAATGTGATCTGATCCTGGATATCTCAGCGTGAAGCATTGGATTCCACAACAAGAACTCCAAAATGCACGAGGTTGCATTTTCTTTCTTGATTGGATCAGTATCAGGTTGGGAGACCTCCTGAGAAGCTCCTTCAAGTGGGCCTCAGTCGCGCTACTATAATTTGAGATGGTTGTCAATCCAGTTATAGAAGAAAGGATTATTTGACACGCCACCTTCTCCAGCACCAAGGAATAACATTCAAGTGTCCAATTGAGAGTTGTAGCCGTGATTTGCATATCTATCTAGTGTAAATAGACACTTGAAAGAATTCCATGATGATAATGCTCCTCCTGAAGTTGAATGTCAGAAACAGTTTGTTTGTCCAGAGGATGGATGTGGAAAGGTGTTTATATGCATCTCGACTGCCAAAGCATGAAGATTCTCGTGTTAAGCTGTACTCAATAGAGGCACATTGAACTGCACCGGGTTGCATGAAAACATGCACCAACAAGCAATGCCTTACGGCTCATAGACAGTCCTGCCACAAGTACATATCTTGTGAGATTTGTGGGAAAAGAAAATTGAGAAAGAACATGAAACAGCATTTATGACAAAAGCACGAGAGCGAAGGTCTGCAAAAGACAGTTCAATGCACGCATGAGAGCTGTTGTGTAAGGTCTTTTCATCAGTAAGTAGCACAGACTTTGCAAATGCGTTTATGAGTGAAACTACTTTTAGCTGAGCTATAGGGCTTCCCAATTATTAATGTCTTTATTTGATATGTTCCCTTGTTTATAATGTCTCAGATTTCAAATCTCCGCCAAAATATGAAAGTTAAGCACTTGGGTCAAAAACCTTTTGCTTGTGGCTTTTCTGGTTGGAGCATGAGATTTGGCTACAAGCATGTTAGGGACAATCAAGAGAAAAATGGCCACCATGTTTTACACTAACATAAGTTTGCATTTAGAAAACTTTATATATTTATGTACATTTGACCTTTAAAAAGATTATTTAAGGTGCTTGTTACTCTGGTAATCAGGGGGATTTTGAAGTAGCTGATCAACAATCCCGCTCAAAGCCAAGGGGAGGACGAACAAGAAAATGTCCAACTGTCGAAATGCTTATATGGAAGCAGGTTACCCTCGCAGCATGGGATTTCACTATGGATGAAGGGTTCTAAGGCTTTTTTGTGAGTACTCAAACCTCTAACCTCTTTTGGTTGTGGACACATGCCTTATGAAGCTTGTTTGCTGACACTCTACTAGTAAGAAGTGGCCCCCTTTGTTAAAAATCCATGTTCATTACAAATATTTGGTGGCTAACCAATGTATAGAATGATAGAATCCGTATGTATAATTATACCCCAACGGAGAACGAAGAGAACAATGACAAACACTTAAGAGATGTGTTATCGTCTAGTGTGTTTAGTTTTTTC

Coding sequence (CDS)

ATGCGTAATCAAACAAATCAATCAATGAATTTAAACACAGAACACTACACAAACCCTCGGTTTCTTTTCTTCGATTTTGGAAAGCGCTGGATGGAGAGTGGAAACCCGAAAGACGATGAAGATGTTAAGGCAAAAGGGAACAAATCCAATATTTGCCAGGATTGTGGTGCTGATTTAAAAAAACTTGCTTACTTGAAGCAACACATGCAAAGCCATTCCTTCGAGACTGGCAGTCAATTTTCATTGGCGGCTCTTCGACTTTGGCCATCAATTTTACGGTCCAATCTTTTTCTTCCATCGAAGGCGATTAGTTTTGCAGGAACAAATCCATAA

Protein sequence

MRNQTNQSMNLNTEHYTNPRFLFFDFGKRWMESGNPKDDEDVKAKGNKSNICQDCGADLKKLAYLKQHMQSHSFETGSQFSLAALRLWPSILRSNLFLPSKAISFAGTNP

Homology

[Close]

BLAST of PI0013058 vs. ExPASy Swiss-Prot
Match: Q84MZ4 (Transcription factor IIIA OS=Arabidopsis thaliana OX=3702 GN=TFIIIA PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.9e-05
Identity = 24/47 (51.06%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 31 MESGNPKDDE--DVKAKGNKSNICQDCGADLKKLAYLKQHMQSHSFE 76
          ME    +DDE  +V  + + ++ CQ+CGA+ KK A+LKQHMQSHS E
Sbjct: 45 MELEEERDDEACEVDEESSSNHTCQECGAEFKKPAHLKQHMQSHSLE 91

[Close]

BLAST of PI0013058 vs. ExPASy TrEMBL
Match: A0A6J1HQH9 (transcription factor IIIA-like OS=Cucurbita maxima OX=3661 GN=LOC111466445 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.3e-08
Identity = 33/45 (73.33%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 31 MESGNPKDDEDVKAKGNKSNICQDCGADLKKLAYLKQHMQSHSFE 76
          MESG  KDD D KAK  KSNIC +CGA  KK AYLKQHMQSHS E
Sbjct: 1  MESGKYKDDGDDKAKDRKSNICHECGAAFKKPAYLKQHMQSHSLE 45

[Close]

BLAST of PI0013058 vs. ExPASy TrEMBL
Match: A0A6J1G248 (transcription factor IIIA-like OS=Cucurbita moschata OX=3662 GN=LOC111449986 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 7.3e-08
Identity = 33/45 (73.33%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 31 MESGNPKDDEDVKAKGNKSNICQDCGADLKKLAYLKQHMQSHSFE 76
          MESG  KDD D KAK  KSNIC +CGA  KK AYLKQHMQSHS E
Sbjct: 1  MESGKYKDDGDDKAKDRKSNICLECGAAFKKPAYLKQHMQSHSLE 45

[Close]

BLAST of PI0013058 vs. ExPASy TrEMBL
Match: A0A6J1JLR2 (transcription factor IIIA isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485568 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.1e-06
Identity = 29/45 (64.44%), Postives = 33/45 (73.33%), Query Frame = 0


Query: 31 MESGNPKDDEDVKAKGNKSNICQDCGADLKKLAYLKQHMQSHSFE 76
          MESG   D+   + K  KSNICQ+CGA+ KK AYLKQHMQSHS E
Sbjct: 1  MESGKHNDEGGDRTKNGKSNICQECGAEFKKPAYLKQHMQSHSLE 45

[Close]

BLAST of PI0013058 vs. ExPASy TrEMBL
Match: A0A0A0KV54 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623900 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.3e-06
Identity = 30/47 (63.83%), Postives = 31/47 (65.96%), Query Frame = 0


Query: 29  RWMESGNPKDDEDVKAKGNKSNICQDCGADLKKLAYLKQHMQSHSFE 76
           R ME G   DD D K K  K NICQ CGA  +K AYLKQHMQSHS E
Sbjct: 76  RQMEIGKHNDDGDDKTKSGKFNICQQCGAAFRKPAYLKQHMQSHSLE 122

[Close]

BLAST of PI0013058 vs. ExPASy TrEMBL
Match: A0A6J1H0A5 (transcription factor IIIA isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111458776 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.5e-05
Identity = 30/45 (66.67%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 31 MESGNPKDDEDVKAKGNKSNICQDCGADLKKLAYLKQHMQSHSFE 76
          MESG   D  D K    KSNICQ+CGA+ KK AYLKQHMQSHS E
Sbjct: 1  MESGKHNDGGD-KTINGKSNICQECGAEFKKPAYLKQHMQSHSLE 44

[Close]

BLAST of PI0013058 vs. NCBI nr
Match: XP_038905330.1 (transcription factor IIIA-like [Benincasa hispida])

HSP 1 Score: 82.8 bits (203), Expect = 2.0e-12
Identity = 38/45 (84.44%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 31 MESGNPKDDEDVKAKGNKSNICQDCGADLKKLAYLKQHMQSHSFE 76
          MESG PKDD D KAKG KSNICQDCG D KK AYLKQHMQSHSFE
Sbjct: 1  MESGKPKDDADAKAKGRKSNICQDCGVDFKKPAYLKQHMQSHSFE 45

[Close]

BLAST of PI0013058 vs. NCBI nr
Match: XP_022966871.1 (transcription factor IIIA-like [Cucurbita maxima])

HSP 1 Score: 67.4 bits (163), Expect = 8.8e-08
Identity = 33/45 (73.33%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 31 MESGNPKDDEDVKAKGNKSNICQDCGADLKKLAYLKQHMQSHSFE 76
          MESG  KDD D KAK  KSNIC +CGA  KK AYLKQHMQSHS E
Sbjct: 1  MESGKYKDDGDDKAKDRKSNICHECGAAFKKPAYLKQHMQSHSLE 45

[Close]

BLAST of PI0013058 vs. NCBI nr
Match: XP_022945877.1 (transcription factor IIIA-like [Cucurbita moschata])

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-07
Identity = 33/45 (73.33%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 31 MESGNPKDDEDVKAKGNKSNICQDCGADLKKLAYLKQHMQSHSFE 76
          MESG  KDD D KAK  KSNIC +CGA  KK AYLKQHMQSHS E
Sbjct: 1  MESGKYKDDGDDKAKDRKSNICLECGAAFKKPAYLKQHMQSHSLE 45

[Close]

BLAST of PI0013058 vs. NCBI nr
Match: KAG6573793.1 (Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-07
Identity = 33/45 (73.33%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 31  MESGNPKDDEDVKAKGNKSNICQDCGADLKKLAYLKQHMQSHSFE 76
           MESG  KDD D KAK  KSNIC +CGA  KK AYLKQHMQSHS E
Sbjct: 185 MESGKYKDDGDDKAKDRKSNICLECGAAFKKPAYLKQHMQSHSLE 229

[Close]

BLAST of PI0013058 vs. NCBI nr
Match: XP_023542929.1 (transcription factor IIIA-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 65.1 bits (157), Expect = 4.4e-07
Identity = 32/45 (71.11%), Postives = 33/45 (73.33%), Query Frame = 0


Query: 31 MESGNPKDDEDVKAKGNKSNICQDCGADLKKLAYLKQHMQSHSFE 76
          MESG  KDD D  AK  KSNIC +CGA  KK AYLKQHMQSHS E
Sbjct: 1  MESGKYKDDGDDMAKDRKSNICHECGAAFKKPAYLKQHMQSHSLE 45

[Close]

BLAST of PI0013058 vs. TAIR 10
Match: AT1G72050.2 (transcription factor IIIA )

HSP 1 Score: 50.1 bits (118), Expect = 1.4e-06
Identity = 24/47 (51.06%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 31 MESGNPKDDE--DVKAKGNKSNICQDCGADLKKLAYLKQHMQSHSFE 76
          ME    +DDE  +V  + + ++ CQ+CGA+ KK A+LKQHMQSHS E
Sbjct: 45 MELEEERDDEACEVDEESSSNHTCQECGAEFKKPAHLKQHMQSHSLE 91

The following BLAST results are available for this feature:

BLAST of PI0013058 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84MZ4	1.9e-05	51.06	Transcription factor IIIA OS=Arabidopsis thaliana OX=3702 GN=TFIIIA PE=1 SV=1	[more]

BLAST of PI0013058 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HQH9	4.3e-08	73.33	transcription factor IIIA-like OS=Cucurbita maxima OX=3661 GN=LOC111466445 PE=4 ...	[more]
A0A6J1G248	7.3e-08	73.33	transcription factor IIIA-like OS=Cucurbita moschata OX=3662 GN=LOC111449986 PE=...	[more]
A0A6J1JLR2	1.1e-06	64.44	transcription factor IIIA isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485568...	[more]
A0A0A0KV54	2.3e-06	63.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623900 PE=4 SV=1	[more]
A0A6J1H0A5	1.5e-05	66.67	transcription factor IIIA isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC1114587...	[more]

BLAST of PI0013058 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905330.1	2.0e-12	84.44	transcription factor IIIA-like [Benincasa hispida]	[more]
XP_022966871.1	8.8e-08	73.33	transcription factor IIIA-like [Cucurbita maxima]	[more]
XP_022945877.1	1.5e-07	73.33	transcription factor IIIA-like [Cucurbita moschata]	[more]
KAG6573793.1	1.5e-07	73.33	Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma s...	[more]
XP_023542929.1	4.4e-07	71.11	transcription factor IIIA-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of PI0013058 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G72050.2	1.4e-06	51.06	transcription factor IIIA	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 52..72
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 50..77 score: 8.870543

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0013058.1	PI0013058.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus