PI0012959 (gene) Melon (PI 482460) v1

Overview


Name	PI0012959
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Reverse transcriptase domain-containing protein
Location	chr08: 2408749 .. 2409003 (+)
RNA-Seq Expression	PI0012959
Synteny	PI0012959

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGATGGATCATCCGTCTTTCAAAGCTAACTTGCCAGTGTGGTGGAATGATAGGATCCAAGGAAGGTGGGAAGGCTATAGGTTTATGGAAAAGTTGAAAGGCCTTAAGGTCAAGCTTGAAGTGTGGAATAAAGAGGTTTTTGGCGACATGCGGTTGGAAAAAAAGAAAGTCACAGCTAGGATCGATGAGATTGACAATTTAGAGTTAGAAGGGCCTATTGACGGAAATCTTGAGGAGGAGAGGTTAGATTGA

mRNA sequence

ATGTGGATGGATCATCCGTCTTTCAAAGCTAACTTGCCAGTGTGGTGGAATGATAGGATCCAAGGAAGGTGGGAAGGCTATAGGTTTATGGAAAAGTTGAAAGGCCTTAAGGTCAAGCTTGAAGTGTGGAATAAAGAGGTTTTTGGCGACATGCGGTTGGAAAAAAAGAAAGTCACAGCTAGGATCGATGAGATTGACAATTTAGAGTTAGAAGGGCCTATTGACGGAAATCTTGAGGAGGAGAGGTTAGATTGA

Coding sequence (CDS)

ATGTGGATGGATCATCCGTCTTTCAAAGCTAACTTGCCAGTGTGGTGGAATGATAGGATCCAAGGAAGGTGGGAAGGCTATAGGTTTATGGAAAAGTTGAAAGGCCTTAAGGTCAAGCTTGAAGTGTGGAATAAAGAGGTTTTTGGCGACATGCGGTTGGAAAAAAAGAAAGTCACAGCTAGGATCGATGAGATTGACAATTTAGAGTTAGAAGGGCCTATTGACGGAAATCTTGAGGAGGAGAGGTTAGATTGA

Protein sequence

MWMDHPSFKANLPVWWNDRIQGRWEGYRFMEKLKGLKVKLEVWNKEVFGDMRLEKKKVTARIDEIDNLELEGPIDGNLEEERLD

Homology

[Close]

BLAST of PI0012959 vs. ExPASy TrEMBL
Match: A0A5A7UQK0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G00550 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 4.0e-22
Identity = 47/82 (57.32%), Postives = 64/82 (78.05%), Query Frame = 0


Query: 1  MWMDHPSFKANLPVWWNDRIQGRWEGYRFMEKLKGLKVKLEVWNKEVFGDMRLEKKKVTA 60
          MW++HPSFKAN   WW+  +QGRW GY FMEKL+ LK+KL VWN EVFGD++++ K++  
Sbjct: 1  MWLEHPSFKANFSSWWSMSVQGRWNGYHFMEKLRALKIKLRVWNNEVFGDIQVKMKEIIK 60

Query: 61 RIDEIDNLELEGPIDGNLEEER 83
          RI++ID  EL+ P DG+L+ ER
Sbjct: 61 RIEKIDAFELDVPSDGSLKGER 82

[Close]

BLAST of PI0012959 vs. ExPASy TrEMBL
Match: A0A5A7SKV1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00350 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.0e-21
Identity = 48/81 (59.26%), Postives = 64/81 (79.01%), Query Frame = 0


Query: 1   MWMDHPSFKANLPVWWNDRIQGRWEG--YRFMEKLKGLKVKLEVWNKEVFGDMRLEKKKV 60
           MW++HPSF ANL  WW+  +QGRWEG  +RFMEKL+ LK  L+VW++E F ++R +KK +
Sbjct: 196 MWLEHPSFNANLSFWWSTMVQGRWEGFRFRFMEKLRALKGNLKVWSREAFRNIRTKKKNI 255

Query: 61  TARIDEIDNLELEGPIDGNLE 80
            ARIDEID LELEGP+D +L+
Sbjct: 256 IARIDEIDTLELEGPLDSSLK 276

[Close]

BLAST of PI0012959 vs. ExPASy TrEMBL
Match: A0A0A0M0E5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G638490 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 6.3e-20
Identity = 45/77 (58.44%), Postives = 62/77 (80.52%), Query Frame = 0


Query: 1  MWMDHPSFKANLPVWWNDRIQGRWEGYRFMEKLKGLKVKLEVWNKEVFGDMRLEKKKVTA 60
          MW++HPSFKA++  WWN  +QGRWEGYRFMEKL+ LK KL V  +EV GD++++KK++  
Sbjct: 1  MWLEHPSFKADISSWWNKPVQGRWEGYRFMEKLRVLKCKLRVQKREVCGDIQVKKKEILN 60

Query: 61 RIDEIDNLELEGPIDGN 78
          RI+EID LEL+ P+D +
Sbjct: 61 RIEEIDALELDEPLDSS 77

[Close]

BLAST of PI0012959 vs. ExPASy TrEMBL
Match: W9RZL0 (Dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex OS=Morus notabilis OX=981085 GN=L484_010402 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 5.5e-16
Identity = 40/82 (48.78%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 1   MWMDHPSFKANLPVWWNDRIQGRWEGYRFMEKLKGLKVKLEVWNKEVFGDMRLEKKKVTA 60
           MW+DHPSF+    +WW +     WEGY+ MEKLKGLK KL+ WNKE FGD  L + ++  
Sbjct: 346 MWLDHPSFRKECEIWWGNMNPVGWEGYKIMEKLKGLKDKLKTWNKESFGDTNLARSELLG 405

Query: 61  RIDEIDNLELEGPIDGNLEEER 83
           RI+ +D+ E E  +D    EER
Sbjct: 406 RIERLDSKEEESGLDNGDREER 427

[Close]

BLAST of PI0012959 vs. ExPASy TrEMBL
Match: A0A5E4FED8 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2B035166 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.4e-14
Identity = 41/85 (48.24%), Postives = 57/85 (67.06%), Query Frame = 0


Query: 1   MWMDHPSFKANLPVWW-NDRIQGRWEGYRFMEKLKGLKVKLEVWNKEVFGDMRLEKKKVT 60
           MW++HP FK     WW  D+I G WEGY+F  +L+ +K K++VWNKEVFGD+   KK+  
Sbjct: 87  MWIEHPEFKKKFKQWWGEDQING-WEGYKFSRRLRTIKQKIKVWNKEVFGDLVSAKKEAE 146

Query: 61  ARIDEIDNLELEGPIDGNLEEERLD 85
           ARI  +D +E +G +D  L +ER D
Sbjct: 147 ARIAALDLMEGQGGLDNTLRKERED 170

[Close]

BLAST of PI0012959 vs. NCBI nr
Match: KAA0057384.1 (hypothetical protein E6C27_scaffold280G002530 [Cucumis melo var. makuwa] >TYK30082.1 hypothetical protein E5676_scaffold216G00550 [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 8.2e-22
Identity = 47/82 (57.32%), Postives = 64/82 (78.05%), Query Frame = 0


Query: 1  MWMDHPSFKANLPVWWNDRIQGRWEGYRFMEKLKGLKVKLEVWNKEVFGDMRLEKKKVTA 60
          MW++HPSFKAN   WW+  +QGRW GY FMEKL+ LK+KL VWN EVFGD++++ K++  
Sbjct: 1  MWLEHPSFKANFSSWWSMSVQGRWNGYHFMEKLRALKIKLRVWNNEVFGDIQVKMKEIIK 60

Query: 61 RIDEIDNLELEGPIDGNLEEER 83
          RI++ID  EL+ P DG+L+ ER
Sbjct: 61 RIEKIDAFELDVPSDGSLKGER 82

[Close]

BLAST of PI0012959 vs. NCBI nr
Match: KAA0031794.1 (hypothetical protein E6C27_scaffold848G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 111.3 bits (277), Expect = 4.1e-21
Identity = 48/81 (59.26%), Postives = 64/81 (79.01%), Query Frame = 0


Query: 1   MWMDHPSFKANLPVWWNDRIQGRWEG--YRFMEKLKGLKVKLEVWNKEVFGDMRLEKKKV 60
           MW++HPSF ANL  WW+  +QGRWEG  +RFMEKL+ LK  L+VW++E F ++R +KK +
Sbjct: 196 MWLEHPSFNANLSFWWSTMVQGRWEGFRFRFMEKLRALKGNLKVWSREAFRNIRTKKKNI 255

Query: 61  TARIDEIDNLELEGPIDGNLE 80
            ARIDEID LELEGP+D +L+
Sbjct: 256 IARIDEIDTLELEGPLDSSLK 276

[Close]

BLAST of PI0012959 vs. NCBI nr
Match: EXC19385.1 (Dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex [Morus notabilis])

HSP 1 Score: 93.2 bits (230), Expect = 1.1e-15
Identity = 40/82 (48.78%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 1   MWMDHPSFKANLPVWWNDRIQGRWEGYRFMEKLKGLKVKLEVWNKEVFGDMRLEKKKVTA 60
           MW+DHPSF+    +WW +     WEGY+ MEKLKGLK KL+ WNKE FGD  L + ++  
Sbjct: 346 MWLDHPSFRKECEIWWGNMNPVGWEGYKIMEKLKGLKDKLKTWNKESFGDTNLARSELLG 405

Query: 61  RIDEIDNLELEGPIDGNLEEER 83
           RI+ +D+ E E  +D    EER
Sbjct: 406 RIERLDSKEEESGLDNGDREER 427

[Close]

BLAST of PI0012959 vs. NCBI nr
Match: BBN69746.1 (VIRB2-interacting protein 2 [Prunus dulcis])

HSP 1 Score: 88.6 bits (218), Expect = 2.8e-14
Identity = 41/85 (48.24%), Postives = 57/85 (67.06%), Query Frame = 0


Query: 1  MWMDHPSFKANLPVWW-NDRIQGRWEGYRFMEKLKGLKVKLEVWNKEVFGDMRLEKKKVT 60
          MW++HP FK     WW  D+I G WEGY+F  +L+ +K K++VWNKEVFGD+   KK+  
Sbjct: 1  MWIEHPEFKKKFKQWWGEDQING-WEGYKFSRRLRTIKQKIKVWNKEVFGDLVSAKKEAE 60

Query: 61 ARIDEIDNLELEGPIDGNLEEERLD 85
          ARI  +D +E +G +D  L +ER D
Sbjct: 61 ARIAALDLMEGQGGLDNTLRKERED 84

[Close]

BLAST of PI0012959 vs. NCBI nr
Match: VVA25489.1 (Hypothetical predicted protein, partial [Prunus dulcis])

HSP 1 Score: 88.6 bits (218), Expect = 2.8e-14
Identity = 41/85 (48.24%), Postives = 57/85 (67.06%), Query Frame = 0


Query: 1   MWMDHPSFKANLPVWW-NDRIQGRWEGYRFMEKLKGLKVKLEVWNKEVFGDMRLEKKKVT 60
           MW++HP FK     WW  D+I G WEGY+F  +L+ +K K++VWNKEVFGD+   KK+  
Sbjct: 87  MWIEHPEFKKKFKQWWGEDQING-WEGYKFSRRLRTIKQKIKVWNKEVFGDLVSAKKEAE 146

Query: 61  ARIDEIDNLELEGPIDGNLEEERLD 85
           ARI  +D +E +G +D  L +ER D
Sbjct: 147 ARIAALDLMEGQGGLDNTLRKERED 170

The following BLAST results are available for this feature:

BLAST of PI0012959 vs.


Match Name	E-value	Identity	Description

BLAST of PI0012959 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UQK0	4.0e-22	57.32	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SKV1	2.0e-21	59.26	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0M0E5	6.3e-20	58.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G638490 PE=4 SV=1	[more]
W9RZL0	5.5e-16	48.78	Dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogen...	[more]
A0A5E4FED8	1.4e-14	48.24	Reverse transcriptase domain-containing protein (Fragment) OS=Prunus dulcis OX=3...	[more]

BLAST of PI0012959 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057384.1	8.2e-22	57.32	hypothetical protein E6C27_scaffold280G002530 [Cucumis melo var. makuwa] >TYK300...	[more]
KAA0031794.1	4.1e-21	59.26	hypothetical protein E6C27_scaffold848G00350 [Cucumis melo var. makuwa]	[more]
EXC19385.1	1.1e-15	48.78	Dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogen...	[more]
BBN69746.1	2.8e-14	48.24	VIRB2-interacting protein 2 [Prunus dulcis]	[more]
VVA25489.1	2.8e-14	48.24	Hypothetical predicted protein, partial [Prunus dulcis]	[more]

BLAST of PI0012959 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0012959.1	PI0012959.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005488	binding
molecular_function	GO:0016779	nucleotidyltransferase activity