PI0012897 (gene) Melon (PI 482460) v1

Overview
NamePI0012897
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionProtein MNN4-like
Locationchr01: 13821872 .. 13822219 (-)
RNA-Seq ExpressionPI0012897
SyntenyPI0012897
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTGGGCAAGAATACGTGGTTAGTCCCACAAGAAGAATGACCCGTGAAGCGTTGGACGTAATCGCCTGGCCTGGGGCCGCATGGGAAGTAACGCCGACAGGGAAGTATCAACTCTATCCACACCAGCTAACCACAGAGGCGAACATGTGGCTTTTCTTCATAAAAAAGAAGATCTTCCCTACGCGCCATGATAGCACCATCAACCTAGAGTCAGCAATACTACTCTATTGTATAATGACGAAGAAGCGCGTCAACCTCGGCGATCTGATAGCTACATCCATTCTGTCCTGGATGCGAGCTCTTAAGGGCGTCATGTCCTTCCCATCAACCCACAGCCGCCACTGA

mRNA sequence

ATGCCTGGGCAAGAATACGTGGTTAGTCCCACAAGAAGAATGACCCGTGAAGCGTTGGACGTAATCGCCTGGCCTGGGGCCGCATGGGAAGTAACGCCGACAGGGAAGTATCAACTCTATCCACACCAGCTAACCACAGAGGCGAACATGTGGCTTTTCTTCATAAAAAAGAAGATCTTCCCTACGCGCCATGATAGCACCATCAACCTAGAGTCAGCAATACTACTCTATTGTATAATGACGAAGAAGCGCGTCAACCTCGGCGATCTGATAGCTACATCCATTCTGTCCTGGATGCGAGCTCTTAAGGGCGTCATGTCCTTCCCATCAACCCACAGCCGCCACTGA

Coding sequence (CDS)

ATGCCTGGGCAAGAATACGTGGTTAGTCCCACAAGAAGAATGACCCGTGAAGCGTTGGACGTAATCGCCTGGCCTGGGGCCGCATGGGAAGTAACGCCGACAGGGAAGTATCAACTCTATCCACACCAGCTAACCACAGAGGCGAACATGTGGCTTTTCTTCATAAAAAAGAAGATCTTCCCTACGCGCCATGATAGCACCATCAACCTAGAGTCAGCAATACTACTCTATTGTATAATGACGAAGAAGCGCGTCAACCTCGGCGATCTGATAGCTACATCCATTCTGTCCTGGATGCGAGCTCTTAAGGGCGTCATGTCCTTCCCATCAACCCACAGCCGCCACTGA

Protein sequence

MPGQEYVVSPTRRMTREALDVIAWPGAAWEVTPTGKYQLYPHQLTTEANMWLFFIKKKIFPTRHDSTINLESAILLYCIMTKKRVNLGDLIATSILSWMRALKGVMSFPSTHSRH
Homology
BLAST of PI0012897 vs. ExPASy TrEMBL
Match: A0A5A7V6M5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold683G00020 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 3.1e-25
Identity = 59/109 (54.13%), Postives = 78/109 (71.56%), Query Frame = 0

Query: 3   GQEYVVSPTRRMTREALDVIAWPGAAWEVTPTG-KYQLYPHQLTTEANMWLFFIKKKIFP 62
           GQE V   T+ + +EAL V+AWPG   EV P   +YQLYPH LTT+AN+W+FF K KIFP
Sbjct: 51  GQEIVTKSTKGLAKEALKVVAWPGIMSEVKPMKLRYQLYPH-LTTKANVWMFFTKNKIFP 110

Query: 63  TRHDSTINLESAILLYCIMTKKRVNLGDLIATSILSWMRALKGVMSFPS 111
           T +DSTI+++  ++LYCIM KK +NL ++I  +IL+WM   K  M FPS
Sbjct: 111 TCYDSTISMDYTVILYCIMIKKAINLDEIIKAAILTWMEIPKEAMPFPS 158

BLAST of PI0012897 vs. ExPASy TrEMBL
Match: A0A5A7U806 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold163G00620 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 4.4e-24
Identity = 58/110 (52.73%), Postives = 72/110 (65.45%), Query Frame = 0

Query: 2    PGQEYVVSPTRRMTREALDVIAWPGAAWEVTPTGKYQLYPHQLTTEANMWLFFIKKKIFP 61
            PGQ  +V       ++ + +I WP A    TPT + QL+PHQLT EAN+WLFFIKKKIFP
Sbjct: 1253 PGQRLIVDCREGDAKKIIKLIVWPEADCTSTPTRRLQLFPHQLTIEANVWLFFIKKKIFP 1312

Query: 62   TRHDSTINLESAILLYCIMTKKRVNLGDLIATSILSWMRALKGVMSFPST 112
            T HDSTI  E A++LYCI  KK  NLG ++  + LSWMR  K    FP+T
Sbjct: 1313 THHDSTILTEYALVLYCINAKKPFNLGYVMNEAFLSWMRNPKNAKPFPTT 1362

BLAST of PI0012897 vs. ExPASy TrEMBL
Match: A0A5D3CVL7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00870 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 4.4e-24
Identity = 58/110 (52.73%), Postives = 72/110 (65.45%), Query Frame = 0

Query: 2   PGQEYVVSPTRRMTREALDVIAWPGAAWEVTPTGKYQLYPHQLTTEANMWLFFIKKKIFP 61
           PGQ  +V       ++ + +I WP A    TPT + QL+PHQLT EAN+WLFFIKKKIFP
Sbjct: 92  PGQRLIVDCREGDAKKIIKLIVWPEADCTSTPTRRLQLFPHQLTIEANVWLFFIKKKIFP 151

Query: 62  TRHDSTINLESAILLYCIMTKKRVNLGDLIATSILSWMRALKGVMSFPST 112
           T HDSTI  E A++LYCI  KK  NLG ++  + LSWMR  K    FP+T
Sbjct: 152 THHDSTILTEYALVLYCINAKKPFNLGYVMNEAFLSWMRNPKNAKPFPTT 201

BLAST of PI0012897 vs. ExPASy TrEMBL
Match: A0A5D3DES7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G00570 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.3e-20
Identity = 52/103 (50.49%), Postives = 66/103 (64.08%), Query Frame = 0

Query: 2   PGQEYVVSPTRRMTREALDVIAWPGAAWEVTPTGKYQLYPHQLTTEANMWLFFIKKKIFP 61
           P Q  +  PT+  +R  + +IAW GA W  T T   QLYPHQLTTEAN+WL FIKKKI P
Sbjct: 46  PSQSLIAEPTKGDSRMIIQLIAWLGAGWTRTTTRSLQLYPHQLTTEANVWLLFIKKKIIP 105

Query: 62  TRHDSTINLESAILLYCIMTKKRVNLGDLIATSILSWMRALKG 105
             +DST+ +E  +LLYC M K+  NLG ++  + L  MR  KG
Sbjct: 106 MCYDSTVPIEYMLLLYCKMAKQPFNLGYMMNEAFLGLMRNSKG 148

BLAST of PI0012897 vs. ExPASy TrEMBL
Match: A0A5A7TZE0 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001090 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.3e-18
Identity = 43/84 (51.19%), Postives = 62/84 (73.81%), Query Frame = 0

Query: 16  REALDVIAWPGAAWEVTPTGKYQLYPHQLTTEANMWLFFIKKKIFPTRHDSTINLESAIL 75
           + AL+ +AWPG  W++TP  KYQL+PH L T A++WL FIKK + PTRHD+TI+LE  +L
Sbjct: 223 QNALERVAWPGMKWDITPIKKYQLFPHNLKTTASVWLVFIKKNLMPTRHDNTISLERIML 282

Query: 76  LYCIMTKKRVNLGDLIATSILSWM 100
           LYCIM +  +N+ ++I   I +W+
Sbjct: 283 LYCIMEEIPLNVDEIIYEPIEAWV 306

BLAST of PI0012897 vs. NCBI nr
Match: KAA0062900.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 124.4 bits (311), Expect = 6.3e-25
Identity = 59/109 (54.13%), Postives = 78/109 (71.56%), Query Frame = 0

Query: 3   GQEYVVSPTRRMTREALDVIAWPGAAWEVTPTG-KYQLYPHQLTTEANMWLFFIKKKIFP 62
           GQE V   T+ + +EAL V+AWPG   EV P   +YQLYPH LTT+AN+W+FF K KIFP
Sbjct: 51  GQEIVTKSTKGLAKEALKVVAWPGIMSEVKPMKLRYQLYPH-LTTKANVWMFFTKNKIFP 110

Query: 63  TRHDSTINLESAILLYCIMTKKRVNLGDLIATSILSWMRALKGVMSFPS 111
           T +DSTI+++  ++LYCIM KK +NL ++I  +IL+WM   K  M FPS
Sbjct: 111 TCYDSTISMDYTVILYCIMIKKAINLDEIIKAAILTWMEIPKEAMPFPS 158

BLAST of PI0012897 vs. NCBI nr
Match: KAA0049609.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 120.6 bits (301), Expect = 9.2e-24
Identity = 58/110 (52.73%), Postives = 72/110 (65.45%), Query Frame = 0

Query: 2    PGQEYVVSPTRRMTREALDVIAWPGAAWEVTPTGKYQLYPHQLTTEANMWLFFIKKKIFP 61
            PGQ  +V       ++ + +I WP A    TPT + QL+PHQLT EAN+WLFFIKKKIFP
Sbjct: 1253 PGQRLIVDCREGDAKKIIKLIVWPEADCTSTPTRRLQLFPHQLTIEANVWLFFIKKKIFP 1312

Query: 62   TRHDSTINLESAILLYCIMTKKRVNLGDLIATSILSWMRALKGVMSFPST 112
            T HDSTI  E A++LYCI  KK  NLG ++  + LSWMR  K    FP+T
Sbjct: 1313 THHDSTILTEYALVLYCINAKKPFNLGYVMNEAFLSWMRNPKNAKPFPTT 1362

BLAST of PI0012897 vs. NCBI nr
Match: TYK15967.1 (hypothetical protein E5676_scaffold94G00870 [Cucumis melo var. makuwa])

HSP 1 Score: 120.6 bits (301), Expect = 9.2e-24
Identity = 58/110 (52.73%), Postives = 72/110 (65.45%), Query Frame = 0

Query: 2   PGQEYVVSPTRRMTREALDVIAWPGAAWEVTPTGKYQLYPHQLTTEANMWLFFIKKKIFP 61
           PGQ  +V       ++ + +I WP A    TPT + QL+PHQLT EAN+WLFFIKKKIFP
Sbjct: 92  PGQRLIVDCREGDAKKIIKLIVWPEADCTSTPTRRLQLFPHQLTIEANVWLFFIKKKIFP 151

Query: 62  TRHDSTINLESAILLYCIMTKKRVNLGDLIATSILSWMRALKGVMSFPST 112
           T HDSTI  E A++LYCI  KK  NLG ++  + LSWMR  K    FP+T
Sbjct: 152 THHDSTILTEYALVLYCINAKKPFNLGYVMNEAFLSWMRNPKNAKPFPTT 201

BLAST of PI0012897 vs. NCBI nr
Match: TYK22187.1 (hypothetical protein E5676_scaffold333G00570 [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 2.8e-20
Identity = 52/103 (50.49%), Postives = 66/103 (64.08%), Query Frame = 0

Query: 2   PGQEYVVSPTRRMTREALDVIAWPGAAWEVTPTGKYQLYPHQLTTEANMWLFFIKKKIFP 61
           P Q  +  PT+  +R  + +IAW GA W  T T   QLYPHQLTTEAN+WL FIKKKI P
Sbjct: 46  PSQSLIAEPTKGDSRMIIQLIAWLGAGWTRTTTRSLQLYPHQLTTEANVWLLFIKKKIIP 105

Query: 62  TRHDSTINLESAILLYCIMTKKRVNLGDLIATSILSWMRALKG 105
             +DST+ +E  +LLYC M K+  NLG ++  + L  MR  KG
Sbjct: 106 MCYDSTVPIEYMLLLYCKMAKQPFNLGYMMNEAFLGLMRNSKG 148

BLAST of PI0012897 vs. NCBI nr
Match: KAE8650696.1 (hypothetical protein Csa_023718, partial [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 1.5e-18
Identity = 47/70 (67.14%), Postives = 56/70 (80.00%), Query Frame = 0

Query: 19 LDVIAWPGAAWEVTPTGKYQLYPHQLTTEANMWLFFIKKKIFPTRHDSTINLESAILLYC 78
          L VIAW G  WEV P G++QLYPHQLT EAN+WLFFIKKKI PTR+DSTI+++ A+  Y 
Sbjct: 2  LKVIAWLGTKWEVAPMGRFQLYPHQLTIEANVWLFFIKKKIVPTRYDSTISVDYAMNFYY 61

Query: 79 IMTKKRVNLG 89
          IMTKKR + G
Sbjct: 62 IMTKKRQSTG 71

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V6M53.1e-2554.13Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold683G0002... [more]
A0A5A7U8064.4e-2452.73Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold163G00620 PE... [more]
A0A5D3CVL74.4e-2452.73Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DES71.3e-2050.49Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TZE01.3e-1851.19Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G00... [more]
Match NameE-valueIdentityDescription
KAA0062900.16.3e-2554.13gag/pol protein [Cucumis melo var. makuwa][more]
KAA0049609.19.2e-2452.73transposase [Cucumis melo var. makuwa][more]
TYK15967.19.2e-2452.73hypothetical protein E5676_scaffold94G00870 [Cucumis melo var. makuwa][more]
TYK22187.12.8e-2050.49hypothetical protein E5676_scaffold333G00570 [Cucumis melo var. makuwa][more]
KAE8650696.11.5e-1867.14hypothetical protein Csa_023718, partial [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0012897.1PI0012897.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane