Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACACTAAGGAAAGCTGCATCCAAAGCTACTATCGCAAACGACACTTACACTAGACTTGTGACCCAAAGTCACTCAAAGAGGAGCATGCAAGAACAAGAACAAGGTTCCGTCCTCACAAAGAAAAGTTGGGAACAACTGATGGAATCTCCTAAAGGCGGGATCATCATTAGAGAGAATCCTTTGTTCAATAACTCTACTCCTGCTTCAGATCTATCAGAGAAAGAATCACAACTTGAAGTAGTGTCTGTCATGATGGCAGATGTAACAACTGAGGCAGCCATGACAGAGATGGAGAGGAAAATAAATTCTCTAATGAAAGCTGTCGAGGAGCGAGATCATGAAATCGCTGCCTTGAAAGATCATATGAAAGCTCGTGAAACTGCTGAGTCGAGCCAAACTCCTGCTGTCAAAGCTGATGATAAAGGAAAAGTTACATTTCAGGAAAACCAAACACAATAA
mRNA sequence
ATGACACTAAGGAAAGCTGCATCCAAAGCTACTATCGCAAACGACACTTACACTAGACTTGTGACCCAAAGTCACTCAAAGAGGAGCATGCAAGAACAAGAACAAGGTTCCGTCCTCACAAAGAAAAGTTGGGAACAACTGATGGAATCTCCTAAAGGCGGGATCATCATTAGAGAGAATCCTTTGTTCAATAACTCTACTCCTGCTTCAGATCTATCAGAGAAAGAATCACAACTTGAAGTAGTGTCTGTCATGATGGCAGATGTAACAACTGAGGCAGCCATGACAGAGATGGAGAGGAAAATAAATTCTCTAATGAAAGCTGTCGAGGAGCGAGATCATGAAATCGCTGCCTTGAAAGATCATATGAAAGCTCGTGAAACTGCTGAGTCGAGCCAAACTCCTGCTGTCAAAGCTGATGATAAAGGAAAAGTTACATTTCAGGAAAACCAAACACAATAA
Coding sequence (CDS)
ATGACACTAAGGAAAGCTGCATCCAAAGCTACTATCGCAAACGACACTTACACTAGACTTGTGACCCAAAGTCACTCAAAGAGGAGCATGCAAGAACAAGAACAAGGTTCCGTCCTCACAAAGAAAAGTTGGGAACAACTGATGGAATCTCCTAAAGGCGGGATCATCATTAGAGAGAATCCTTTGTTCAATAACTCTACTCCTGCTTCAGATCTATCAGAGAAAGAATCACAACTTGAAGTAGTGTCTGTCATGATGGCAGATGTAACAACTGAGGCAGCCATGACAGAGATGGAGAGGAAAATAAATTCTCTAATGAAAGCTGTCGAGGAGCGAGATCATGAAATCGCTGCCTTGAAAGATCATATGAAAGCTCGTGAAACTGCTGAGTCGAGCCAAACTCCTGCTGTCAAAGCTGATGATAAAGGAAAAGTTACATTTCAGGAAAACCAAACACAATAA
Protein sequence
MTLRKAASKATIANDTYTRLVTQSHSKRSMQEQEQGSVLTKKSWEQLMESPKGGIIIRENPLFNNSTPASDLSEKESQLEVVSVMMADVTTEAAMTEMERKINSLMKAVEERDHEIAALKDHMKARETAESSQTPAVKADDKGKVTFQENQTQ
Homology
BLAST of PI0012893 vs. ExPASy TrEMBL
Match:
A0A5A7VH30 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold979G00700 PE=4 SV=1)
HSP 1 Score: 214.2 bits (544), Expect = 3.9e-52
Identity = 120/153 (78.43%), Postives = 132/153 (86.27%), Query Frame = 0
Query: 1 MTLRKAASKATIANDTYTRLVTQSHSKRSMQEQEQGSVLTKKSWEQLMESPKGGIIIREN 60
M K ASK + A+D+YT LVTQSH KRSMQEQEQGSVL KKS EQL+ESPKGGIII++N
Sbjct: 1 MASNKVASKFSAASDSYTGLVTQSHLKRSMQEQEQGSVLKKKSLEQLIESPKGGIIIKDN 60
Query: 61 PLFNNSTPASDLSEKESQLEVVSVMMADVTTEAAMTEMERKINSLMKAVEERDHEIAALK 120
PLFNNST AS+LS+KES LEVVSVMMADVT EA M EMERKIN LMK +EERDHEIAALK
Sbjct: 61 PLFNNSTSASNLSDKESHLEVVSVMMADVTAEATMAEMERKINYLMKVIEERDHEIAALK 120
Query: 121 DHMKARETAESSQTPAVKADDKGKVTFQENQTQ 154
D +KA ETAESS+TPAVKA+DKGKV QENQTQ
Sbjct: 121 DQIKACETAESSKTPAVKANDKGKVVLQENQTQ 153
BLAST of PI0012893 vs. ExPASy TrEMBL
Match:
A0A5D3BYI9 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2119G00210 PE=4 SV=1)
HSP 1 Score: 212.6 bits (540), Expect = 1.1e-51
Identity = 119/153 (77.78%), Postives = 131/153 (85.62%), Query Frame = 0
Query: 1 MTLRKAASKATIANDTYTRLVTQSHSKRSMQEQEQGSVLTKKSWEQLMESPKGGIIIREN 60
M K ASK + +D+YT LVTQSH KRSMQEQEQGSVL KKS EQL+ESPKGGIII++N
Sbjct: 1 MASNKVASKFSAVSDSYTGLVTQSHLKRSMQEQEQGSVLKKKSLEQLIESPKGGIIIKDN 60
Query: 61 PLFNNSTPASDLSEKESQLEVVSVMMADVTTEAAMTEMERKINSLMKAVEERDHEIAALK 120
PLFNNST AS+LS+KES LEVVSVMMADVT EA M EMERKIN LMK +EERDHEIAALK
Sbjct: 61 PLFNNSTSASNLSDKESHLEVVSVMMADVTAEATMAEMERKINYLMKVIEERDHEIAALK 120
Query: 121 DHMKARETAESSQTPAVKADDKGKVTFQENQTQ 154
D +KA ETAESS+TPAVKA+DKGKV QENQTQ
Sbjct: 121 DQIKACETAESSKTPAVKANDKGKVVLQENQTQ 153
BLAST of PI0012893 vs. ExPASy TrEMBL
Match:
A0A5A7SSD3 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold701G00230 PE=4 SV=1)
HSP 1 Score: 209.1 bits (531), Expect = 1.3e-50
Identity = 119/153 (77.78%), Postives = 128/153 (83.66%), Query Frame = 0
Query: 1 MTLRKAASKATIANDTYTRLVTQSHSKRSMQEQEQGSVLTKKSWEQLMESPKGGIIIREN 60
MT KAASK++ A+D+Y LVTQSH KRSMQEQEQG VL KKS EQL+ESPKGGIIIR+N
Sbjct: 1 MTTNKAASKSSAASDSYIGLVTQSHLKRSMQEQEQGFVLKKKSLEQLIESPKGGIIIRDN 60
Query: 61 PLFNNSTPASDLSEKESQLEVVSVMMADVTTEAAMTEMERKINSLMKAVEERDHEIAALK 120
PLFNNSTPAS+LS+KES LEVVSVMM DV EA M +MERKIN LMK VEERDHEIAALK
Sbjct: 61 PLFNNSTPASNLSDKESHLEVVSVMMVDVAAEATMAKMERKINFLMKVVEERDHEIAALK 120
Query: 121 DHMKARETAESSQTPAVKADDKGKVTFQENQTQ 154
D MKA ETAESSQTP VKA DKGK QENQ Q
Sbjct: 121 DQMKACETAESSQTPVVKATDKGKNMVQENQPQ 153
BLAST of PI0012893 vs. ExPASy TrEMBL
Match:
A0A5A7SRE2 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold452G00210 PE=4 SV=1)
HSP 1 Score: 208.8 bits (530), Expect = 1.6e-50
Identity = 117/153 (76.47%), Postives = 128/153 (83.66%), Query Frame = 0
Query: 1 MTLRKAASKATIANDTYTRLVTQSHSKRSMQEQEQGSVLTKKSWEQLMESPKGGIIIREN 60
MT KAASK++ +D+Y LVTQSH KRSMQEQEQG VL KKS EQL+ESPKGGI+IR+N
Sbjct: 1 MTTNKAASKSSAVSDSYIGLVTQSHLKRSMQEQEQGFVLKKKSLEQLIESPKGGIVIRDN 60
Query: 61 PLFNNSTPASDLSEKESQLEVVSVMMADVTTEAAMTEMERKINSLMKAVEERDHEIAALK 120
PLFNNSTPAS+LS+KES LEVVSVMM DVT EA M EMERKIN LMK VEERDHEIAALK
Sbjct: 61 PLFNNSTPASNLSDKESHLEVVSVMMVDVTAEATMAEMERKINFLMKVVEERDHEIAALK 120
Query: 121 DHMKARETAESSQTPAVKADDKGKVTFQENQTQ 154
D MKA ET+ESSQTP VKA DKGK +ENQ Q
Sbjct: 121 DQMKACETSESSQTPVVKATDKGKNVVEENQPQ 153
BLAST of PI0012893 vs. ExPASy TrEMBL
Match:
A0A5D3DIN4 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold278G00020 PE=4 SV=1)
HSP 1 Score: 206.5 bits (524), Expect = 8.2e-50
Identity = 117/153 (76.47%), Postives = 128/153 (83.66%), Query Frame = 0
Query: 1 MTLRKAASKATIANDTYTRLVTQSHSKRSMQEQEQGSVLTKKSWEQLMESPKGGIIIREN 60
M +K ASK++ A+D+Y LVTQSH KRSMQEQEQG VL KKS EQL+ESPKG IIIR+N
Sbjct: 1 MASKKVASKSSAASDSYIGLVTQSHLKRSMQEQEQGFVLKKKSLEQLIESPKGRIIIRDN 60
Query: 61 PLFNNSTPASDLSEKESQLEVVSVMMADVTTEAAMTEMERKINSLMKAVEERDHEIAALK 120
PLFNNSTPAS+LS+KES LEVVSVMM DVTTEA M EME+KIN LMK VEERDHEIAALK
Sbjct: 61 PLFNNSTPASNLSDKESHLEVVSVMMVDVTTEATMVEMEKKINFLMKVVEERDHEIAALK 120
Query: 121 DHMKARETAESSQTPAVKADDKGKVTFQENQTQ 154
D MKA ETAESS+TP VKA DKGK QENQ Q
Sbjct: 121 DQMKAYETAESSKTPVVKATDKGKNVVQENQPQ 153
BLAST of PI0012893 vs. NCBI nr
Match:
KAA0066644.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 214.2 bits (544), Expect = 8.1e-52
Identity = 120/153 (78.43%), Postives = 132/153 (86.27%), Query Frame = 0
Query: 1 MTLRKAASKATIANDTYTRLVTQSHSKRSMQEQEQGSVLTKKSWEQLMESPKGGIIIREN 60
M K ASK + A+D+YT LVTQSH KRSMQEQEQGSVL KKS EQL+ESPKGGIII++N
Sbjct: 1 MASNKVASKFSAASDSYTGLVTQSHLKRSMQEQEQGSVLKKKSLEQLIESPKGGIIIKDN 60
Query: 61 PLFNNSTPASDLSEKESQLEVVSVMMADVTTEAAMTEMERKINSLMKAVEERDHEIAALK 120
PLFNNST AS+LS+KES LEVVSVMMADVT EA M EMERKIN LMK +EERDHEIAALK
Sbjct: 61 PLFNNSTSASNLSDKESHLEVVSVMMADVTAEATMAEMERKINYLMKVIEERDHEIAALK 120
Query: 121 DHMKARETAESSQTPAVKADDKGKVTFQENQTQ 154
D +KA ETAESS+TPAVKA+DKGKV QENQTQ
Sbjct: 121 DQIKACETAESSKTPAVKANDKGKVVLQENQTQ 153
BLAST of PI0012893 vs. NCBI nr
Match:
TYK04088.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 212.6 bits (540), Expect = 2.4e-51
Identity = 119/153 (77.78%), Postives = 131/153 (85.62%), Query Frame = 0
Query: 1 MTLRKAASKATIANDTYTRLVTQSHSKRSMQEQEQGSVLTKKSWEQLMESPKGGIIIREN 60
M K ASK + +D+YT LVTQSH KRSMQEQEQGSVL KKS EQL+ESPKGGIII++N
Sbjct: 1 MASNKVASKFSAVSDSYTGLVTQSHLKRSMQEQEQGSVLKKKSLEQLIESPKGGIIIKDN 60
Query: 61 PLFNNSTPASDLSEKESQLEVVSVMMADVTTEAAMTEMERKINSLMKAVEERDHEIAALK 120
PLFNNST AS+LS+KES LEVVSVMMADVT EA M EMERKIN LMK +EERDHEIAALK
Sbjct: 61 PLFNNSTSASNLSDKESHLEVVSVMMADVTAEATMAEMERKINYLMKVIEERDHEIAALK 120
Query: 121 DHMKARETAESSQTPAVKADDKGKVTFQENQTQ 154
D +KA ETAESS+TPAVKA+DKGKV QENQTQ
Sbjct: 121 DQIKACETAESSKTPAVKANDKGKVVLQENQTQ 153
BLAST of PI0012893 vs. NCBI nr
Match:
KAA0032461.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYJ99906.1 retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 209.1 bits (531), Expect = 2.6e-50
Identity = 119/153 (77.78%), Postives = 128/153 (83.66%), Query Frame = 0
Query: 1 MTLRKAASKATIANDTYTRLVTQSHSKRSMQEQEQGSVLTKKSWEQLMESPKGGIIIREN 60
MT KAASK++ A+D+Y LVTQSH KRSMQEQEQG VL KKS EQL+ESPKGGIIIR+N
Sbjct: 1 MTTNKAASKSSAASDSYIGLVTQSHLKRSMQEQEQGFVLKKKSLEQLIESPKGGIIIRDN 60
Query: 61 PLFNNSTPASDLSEKESQLEVVSVMMADVTTEAAMTEMERKINSLMKAVEERDHEIAALK 120
PLFNNSTPAS+LS+KES LEVVSVMM DV EA M +MERKIN LMK VEERDHEIAALK
Sbjct: 61 PLFNNSTPASNLSDKESHLEVVSVMMVDVAAEATMAKMERKINFLMKVVEERDHEIAALK 120
Query: 121 DHMKARETAESSQTPAVKADDKGKVTFQENQTQ 154
D MKA ETAESSQTP VKA DKGK QENQ Q
Sbjct: 121 DQMKACETAESSQTPVVKATDKGKNMVQENQPQ 153
BLAST of PI0012893 vs. NCBI nr
Match:
KAA0032121.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 208.8 bits (530), Expect = 3.4e-50
Identity = 117/153 (76.47%), Postives = 128/153 (83.66%), Query Frame = 0
Query: 1 MTLRKAASKATIANDTYTRLVTQSHSKRSMQEQEQGSVLTKKSWEQLMESPKGGIIIREN 60
MT KAASK++ +D+Y LVTQSH KRSMQEQEQG VL KKS EQL+ESPKGGI+IR+N
Sbjct: 1 MTTNKAASKSSAVSDSYIGLVTQSHLKRSMQEQEQGFVLKKKSLEQLIESPKGGIVIRDN 60
Query: 61 PLFNNSTPASDLSEKESQLEVVSVMMADVTTEAAMTEMERKINSLMKAVEERDHEIAALK 120
PLFNNSTPAS+LS+KES LEVVSVMM DVT EA M EMERKIN LMK VEERDHEIAALK
Sbjct: 61 PLFNNSTPASNLSDKESHLEVVSVMMVDVTAEATMAEMERKINFLMKVVEERDHEIAALK 120
Query: 121 DHMKARETAESSQTPAVKADDKGKVTFQENQTQ 154
D MKA ET+ESSQTP VKA DKGK +ENQ Q
Sbjct: 121 DQMKACETSESSQTPVVKATDKGKNVVEENQPQ 153
BLAST of PI0012893 vs. NCBI nr
Match:
KAA0040518.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 206.5 bits (524), Expect = 1.7e-49
Identity = 117/153 (76.47%), Postives = 128/153 (83.66%), Query Frame = 0
Query: 1 MTLRKAASKATIANDTYTRLVTQSHSKRSMQEQEQGSVLTKKSWEQLMESPKGGIIIREN 60
M +K ASK++ A+D+Y LVTQSH KRSMQEQEQG VL KKS EQL+ESPKG IIIR+N
Sbjct: 1 MASKKVASKSSAASDSYIGLVTQSHLKRSMQEQEQGFVLKKKSLEQLIESPKGRIIIRDN 60
Query: 61 PLFNNSTPASDLSEKESQLEVVSVMMADVTTEAAMTEMERKINSLMKAVEERDHEIAALK 120
PLFNNSTPAS+LS+KES LEVVSVMM DVTTEA M EME+KIN LMK VEERDHEIAALK
Sbjct: 61 PLFNNSTPASNLSDKESHLEVVSVMMVDVTTEATMVEMEKKINFLMKVVEERDHEIAALK 120
Query: 121 DHMKARETAESSQTPAVKADDKGKVTFQENQTQ 154
D MKA ETAESS+TP VKA DKGK QENQ Q
Sbjct: 121 DQMKAYETAESSKTPVVKATDKGKNVVQENQPQ 153
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7VH30 | 3.9e-52 | 78.43 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
| A0A5D3BYI9 | 1.1e-51 | 77.78 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5A7SSD3 | 1.3e-50 | 77.78 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
| A0A5A7SRE2 | 1.6e-50 | 76.47 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
| A0A5D3DIN4 | 8.2e-50 | 76.47 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0066644.1 | 8.1e-52 | 78.43 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| TYK04088.1 | 2.4e-51 | 77.78 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0032461.1 | 2.6e-50 | 77.78 | retrotransposon gag protein [Cucumis melo var. makuwa] >TYJ99906.1 retrotranspos... | [more] |
| KAA0032121.1 | 3.4e-50 | 76.47 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0040518.1 | 1.7e-49 | 76.47 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
