PI0012862 (gene) Melon (PI 482460) v1

Overview


Name	PI0012862
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag-pol polyprotein
Location	chr01: 21404184 .. 21404741 (-)
RNA-Seq Expression	PI0012862
Synteny	PI0012862

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAATTACTCTATCAAATGATGAGTTAACAGTTGACAACGATTGTGAAGAAGACGATAGAGCCTTGTTTGGTTGTGTTGCAGAGGTTGAATCTACAGTAATAGAAGGCAGTGTGGTTCAAAAGAATAATATTGACAGTACTGGTGATGGTGCTGAGTCTGAGGTTGTTAGCCAGAGTATTGACTAGTTGCACGTGAAATGAGAATAGGATCAGATAGTGCTGAAACATTAGAAGGATCGGATCTAGACCTTATTGGAAGATAATCATCGTTTGTTATCCATGATATCCACCCTCAAACTTGAGTTGAAAGTTGTTCGTGTGGACTTTGAAGCTCTATCCAAGTCGTTCAGGATGCTCAATTTTGGCACACAAGTCCTAAACAGTATTCTGAAAGCAGGCAAGATTAGAATGGACAAAAAGGGTATAGGATTCTCTGATAAAAGTCAACAGGGAGCAACCAATGAATGTCCGAGAACTATATTTGTTCGTGCTAAGGAAGCTTGTGTCGAGGAAACTGAAAAAGGTATATCTCAAGAAGGCAATTTAGTTAACTGA

mRNA sequence

ATGACAATTACTCTATCAAATGATGAGTTAACAGTTGACAACGATTGTGAAGAAGACGATAGAGCCTTGTTTGGTTGTGTTGCAGAGGTTGAATCTACAGTAATAGAAGGCAGTGTGGTTCAAAAGAATAATATTGACAGTACTGGTGATGGTGCTGAGTCTGAGGTTACCTTATTGGAAGATAATCATCGTTTGTTATCCATGATATCCACCCTCAAACTTGAGTTGAAAGTTGTTCGTGTGGACTTTGAAGCTCTATCCAAGTCGTTCAGGATGCTCAATTTTGGCACACAAGTCCTAAACAGTATTCTGAAAGCAGGCAAGATTAGAATGGACAAAAAGGGTATAGGATTCTCTGATAAAAGTCAACAGGGAGCAACCAATGAATGTCCGAGAACTATATTTGTTCGTGCTAAGGAAGCTTGTGTCGAGGAAACTGAAAAAGGTATATCTCAAGAAGGCAATTTAGTTAACTGA

Coding sequence (CDS)

ATGACAATTACTCTATCAAATGATGAGTTAACAGTTGACAACGATTGTGAAGAAGACGATAGAGCCTTGTTTGGTTGTGTTGCAGAGGTTGAATCTACAGTAATAGAAGGCAGTGTGGTTCAAAAGAATAATATTGACAGTACTGGTGATGGTGCTGAGTCTGAGGTTACCTTATTGGAAGATAATCATCGTTTGTTATCCATGATATCCACCCTCAAACTTGAGTTGAAAGTTGTTCGTGTGGACTTTGAAGCTCTATCCAAGTCGTTCAGGATGCTCAATTTTGGCACACAAGTCCTAAACAGTATTCTGAAAGCAGGCAAGATTAGAATGGACAAAAAGGGTATAGGATTCTCTGATAAAAGTCAACAGGGAGCAACCAATGAATGTCCGAGAACTATATTTGTTCGTGCTAAGGAAGCTTGTGTCGAGGAAACTGAAAAAGGTATATCTCAAGAAGGCAATTTAGTTAACTGA

Protein sequence

MTITLSNDELTVDNDCEEDDRALFGCVAEVESTVIEGSVVQKNNIDSTGDGAESEVTLLEDNHRLLSMISTLKLELKVVRVDFEALSKSFRMLNFGTQVLNSILKAGKIRMDKKGIGFSDKSQQGATNECPRTIFVRAKEACVEETEKGISQEGNLVN

Homology

[Close]

BLAST of PI0012862 vs. ExPASy TrEMBL
Match: A0A5D3DD57 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G001180 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 6.5e-10
Identity = 56/162 (34.57%), Postives = 84/162 (51.85%), Query Frame = 0


Query: 1   MTITLSNDELTVDNDCEEDDRALFGCVAEVESTVIEGSVVQKNNIDSTGDG--------- 60
           + +TLS++E + D+D E     L  CV E ES V +   V       T            
Sbjct: 105 LAVTLSDEESSSDSDGENFGTTLISCVLENESEVSKTEFVLTLKDRKTNSSQLKYDELLS 164

Query: 61  ---AESEV---------TLLEDNHRLLSMISTLKLELKVVRVDFEALSKSFRMLNFGTQV 120
               + EV          LLEDNH L+SMI  LK++LK V+ +F++LSKS R+L   TQ 
Sbjct: 165 KWEEDQEVFKVQKERIQALLEDNHHLMSMIYALKMDLKDVQNEFDSLSKSVRLLFPKTQS 224

Query: 121 LNSILKAGKIRMDKKGIGFSDKSQQGATNECPRTIFVRAKEA 142
           L+++L  GKI+ +KK +G+  K+   + +E    +FVRA  +
Sbjct: 225 LDNLLSEGKIKSNKKDLGYLGKN---SYSENSSKMFVRASNS 263

[Close]

BLAST of PI0012862 vs. ExPASy TrEMBL
Match: A0A5D3BQY7 (Putative envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001670 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.5e-09
Identity = 53/154 (34.42%), Postives = 79/154 (51.30%), Query Frame = 0


Query: 4   TLSNDELTVDNDCEEDDRALFGCVAEVESTVIEGSVVQKNNIDSTGDGAESEV------- 63
           TLS+DE + D+DCE   RAL   +   E+ + E + + + N   T      EV       
Sbjct: 47  TLSDDESSSDSDCEIFGRALVSSL--TENPIEEPTKITEINTPKTTHSDLEEVLSMWEED 106

Query: 64  ------------TLLEDNHRLLSMISTLKLELKVVRVDFEALSKSFRMLNFGTQVLNSIL 123
                        L ++N RL+  IS LK ELK  + +++ L+KS RML+ GT  L+ IL
Sbjct: 107 QKVLNQQQEKIMILTKENLRLMEKISELKDELKNAKKEYDTLNKSVRMLSLGTSTLDEIL 166

Query: 124 KAGKIRMDKKGIGFSDKSQQGATNECPRTIFVRA 139
              K++ DKKGIG+S    +G  ++   T+FV A
Sbjct: 167 SKEKVKNDKKGIGYS----KGEFSKTKSTVFVCA 194

[Close]

BLAST of PI0012862 vs. ExPASy TrEMBL
Match: A0A5D3BTR4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G002030 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.6e-08
Identity = 33/63 (52.38%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 59  LEDNHRLLSMISTLKLELKVVRVDFEALSKSFRMLNFGTQVLNSILKAGKIRMDKKGIGF 118
           +EDNHRL++MIS LK+EL+ V  +F++LSKS ++L FGTQ L+++L  GK + DK  +GF
Sbjct: 1   MEDNHRLMTMISALKMELRDVCSEFKSLSKSVKLLTFGTQSLDNLLNEGKNKGDKYDLGF 60

Query: 119 SDK 122
            +K
Sbjct: 61  FEK 63

[Close]

BLAST of PI0012862 vs. ExPASy TrEMBL
Match: A0A5D3DZR7 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G002490 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.0e-07
Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = 0


Query: 58  LLEDNHRLLSMISTLKLELKVVRVDFEALSKSFRMLNFGTQVLNSILKAGKIRMDKKGIG 117
           L+E+N   LS I TLK ELK  R  FE LSKS +M+  GT  L+ +L  GK   DK+G+G
Sbjct: 219 LMEENQSFLSSIVTLKAELKEARNQFEELSKSIKMMTSGTHKLDDLLGQGKRSDDKRGLG 278

Query: 118 FSDKSQQGATNECPRTIFVRAKEA 142
           FS++      N   +T+FVR  ++
Sbjct: 279 FSERGSDRTKN---KTVFVRESKS 299

[Close]

BLAST of PI0012862 vs. ExPASy TrEMBL
Match: A0A5D3D296 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003460 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.0e-07
Identity = 38/82 (46.34%), Postives = 50/82 (60.98%), Query Frame = 0


Query: 59  LEDNHRLLSMISTLKLELKVVRVDFEALSKSFRMLNFGTQVLNSILKAGKIRMDKKGIGF 118
           +EDNHR LS ++TLK ELK  R +FE LSK  +ML  GTQ L +IL  GK   +K G+GF
Sbjct: 1   MEDNHRYLSSLATLKAELKEARNEFEFLSKYVKMLKSGTQSLENILNDGKSSSNKMGLGF 60

Query: 119 SDKSQQGATNECPRTIFVRAKE 141
           S    +G       T+F +A +
Sbjct: 61  S----EGTFATTSTTMFAKASD 78

[Close]

BLAST of PI0012862 vs. NCBI nr
Match: KAA0051793.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK21448.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-09
Identity = 56/162 (34.57%), Postives = 84/162 (51.85%), Query Frame = 0


Query: 1   MTITLSNDELTVDNDCEEDDRALFGCVAEVESTVIEGSVVQKNNIDSTGDG--------- 60
           + +TLS++E + D+D E     L  CV E ES V +   V       T            
Sbjct: 105 LAVTLSDEESSSDSDGENFGTTLISCVLENESEVSKTEFVLTLKDRKTNSSQLKYDELLS 164

Query: 61  ---AESEV---------TLLEDNHRLLSMISTLKLELKVVRVDFEALSKSFRMLNFGTQV 120
               + EV          LLEDNH L+SMI  LK++LK V+ +F++LSKS R+L   TQ 
Sbjct: 165 KWEEDQEVFKVQKERIQALLEDNHHLMSMIYALKMDLKDVQNEFDSLSKSVRLLFPKTQS 224

Query: 121 LNSILKAGKIRMDKKGIGFSDKSQQGATNECPRTIFVRAKEA 142
           L+++L  GKI+ +KK +G+  K+   + +E    +FVRA  +
Sbjct: 225 LDNLLSEGKIKSNKKDLGYLGKN---SYSENSSKMFVRASNS 263

[Close]

BLAST of PI0012862 vs. NCBI nr
Match: TYK01584.1 (putative envelope-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-08
Identity = 53/154 (34.42%), Postives = 79/154 (51.30%), Query Frame = 0


Query: 4   TLSNDELTVDNDCEEDDRALFGCVAEVESTVIEGSVVQKNNIDSTGDGAESEV------- 63
           TLS+DE + D+DCE   RAL   +   E+ + E + + + N   T      EV       
Sbjct: 47  TLSDDESSSDSDCEIFGRALVSSL--TENPIEEPTKITEINTPKTTHSDLEEVLSMWEED 106

Query: 64  ------------TLLEDNHRLLSMISTLKLELKVVRVDFEALSKSFRMLNFGTQVLNSIL 123
                        L ++N RL+  IS LK ELK  + +++ L+KS RML+ GT  L+ IL
Sbjct: 107 QKVLNQQQEKIMILTKENLRLMEKISELKDELKNAKKEYDTLNKSVRMLSLGTSTLDEIL 166

Query: 124 KAGKIRMDKKGIGFSDKSQQGATNECPRTIFVRA 139
              K++ DKKGIG+S    +G  ++   T+FV A
Sbjct: 167 SKEKVKNDKKGIGYS----KGEFSKTKSTVFVCA 194

[Close]

BLAST of PI0012862 vs. NCBI nr
Match: TYK01606.1 (uncharacterized protein E5676_scaffold451G002030 [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 7.4e-08
Identity = 33/63 (52.38%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 59  LEDNHRLLSMISTLKLELKVVRVDFEALSKSFRMLNFGTQVLNSILKAGKIRMDKKGIGF 118
           +EDNHRL++MIS LK+EL+ V  +F++LSKS ++L FGTQ L+++L  GK + DK  +GF
Sbjct: 1   MEDNHRLMTMISALKMELRDVCSEFKSLSKSVKLLTFGTQSLDNLLNEGKNKGDKYDLGF 60

Query: 119 SDK 122
            +K
Sbjct: 61  FEK 63

[Close]

BLAST of PI0012862 vs. NCBI nr
Match: KAA0056406.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK29112.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 2.2e-07
Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = 0


Query: 58  LLEDNHRLLSMISTLKLELKVVRVDFEALSKSFRMLNFGTQVLNSILKAGKIRMDKKGIG 117
           L+E+N   LS I TLK ELK  R  FE LSKS +M+  GT  L+ +L  GK   DK+G+G
Sbjct: 219 LMEENQSFLSSIVTLKAELKEARNQFEELSKSIKMMTSGTHKLDDLLGQGKRSDDKRGLG 278

Query: 118 FSDKSQQGATNECPRTIFVRAKEA 142
           FS++      N   +T+FVR  ++
Sbjct: 279 FSERGSDRTKN---KTVFVRESKS 299

[Close]

BLAST of PI0012862 vs. NCBI nr
Match: KAA0042084.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK18027.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 2.2e-07
Identity = 38/82 (46.34%), Postives = 50/82 (60.98%), Query Frame = 0


Query: 59  LEDNHRLLSMISTLKLELKVVRVDFEALSKSFRMLNFGTQVLNSILKAGKIRMDKKGIGF 118
           +EDNHR LS ++TLK ELK  R +FE LSK  +ML  GTQ L +IL  GK   +K G+GF
Sbjct: 1   MEDNHRYLSSLATLKAELKEARNEFEFLSKYVKMLKSGTQSLENILNDGKSSSNKMGLGF 60

Query: 119 SDKSQQGATNECPRTIFVRAKE 141
           S    +G       T+F +A +
Sbjct: 61  S----EGTFATTSTTMFAKASD 78

The following BLAST results are available for this feature:

BLAST of PI0012862 vs.


Match Name	E-value	Identity	Description

BLAST of PI0012862 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DD57	6.5e-10	34.57	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G...	[more]
A0A5D3BQY7	5.5e-09	34.42	Putative envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5D3BTR4	3.6e-08	52.38	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DZR7	1.0e-07	44.05	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G...	[more]
A0A5D3D296	1.0e-07	46.34	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G...	[more]

BLAST of PI0012862 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051793.1	1.4e-09	34.57	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK21448.1 gag-pol polyprotein [...	[more]
TYK01584.1	1.1e-08	34.42	putative envelope-like protein [Cucumis melo var. makuwa]	[more]
TYK01606.1	7.4e-08	52.38	uncharacterized protein E5676_scaffold451G002030 [Cucumis melo var. makuwa]	[more]
KAA0056406.1	2.2e-07	44.05	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK29112.1 gag-pol polyprotein [...	[more]
KAA0042084.1	2.2e-07	46.34	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK18027.1 gag-pol polyprotein [...	[more]

BLAST of PI0012862 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0012862.1	PI0012862.1	mRNA