PI0012519 (gene) Melon (PI 482460) v1

Overview


Name	PI0012519
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr04: 28804367 .. 28805744 (+)
RNA-Seq Expression	PI0012519
Synteny	PI0012519

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACATTCTTCGATACGGAATGTCATCGAAAGAGTGTTCGGGTTGTTGAAAGGTCGATGGACTATTTTAAGAGGAAAATCATACTACCTAGTTGAAGTCCAATGTCGAACTATCATGGCGTGTTGTCTTCTACATAATCTTATCAACAAAGAGATGACTAATAATGAAATAATCGACGATTTGGACGAGGGTGATTCAACCTACGCTACAACGGGAAGTGACGAGATTAATTACATTGAGACCTCAAACGACTGAAGTCAATGTAAGGATCAATTGGCTCATATGATGTTCAGTGATTGGGAGTTACGTAACCAGTAGTGCCTTAATCCTGTTTCAATTACTGGCAAAGCTTTTAATTAATATTTTGTCATTGTTCTAAACTGCTAATGTGTTCTGAAATGTATGCATTGGGAACACTCTTCGTGTATGTTCTGATTGTGATGTTCCCTAAGTACATAATTTTCATGGTCTACAATTAATTTTGTTGGATACTAATATATCTTGTTTCACTTTGTTAAATTGTGTACGTATGTACGATACAATGACAGTTCTTCAAGAGCACTGAAACACACATGGAATAAAGAGGAAGAAGCAAAACTGGTTGACTGCTTGGTGGAATTGGTTTCATTTGGTGGATGGAGGTCAGATAATGAGACATTTCGACCTGGATACTTGGCCCAATTACAACGGATGATGGTGGAGAAGTTGTCTGACACTAATATCCAAGGATCGACGACTATAGATTGTCGTGTCAAATCCCTTAAAAAAACCTATCAAGCAATTGCAGAAATAAGGGGGCCATCCTATAGTGGTTTTGGATGGAATGAAGAACATCAATACATCATCGCAGAACGAGAGTTGTTTGATAGTTGGGTCAAGGTATGAATTTGACAGTACAATTTGATCTATTTTCGAAATCAAAATCATCAACTAATCTGTTTGTTTGATGTTTTTACAGAGTCATCCTGCAGCCAAAGGACTTCTACACAAATCATTTCCATATTATGATGATCTGTCCTATGTCTTTGGCAAAGATCGGGCAACGGGAGCACGTTCAGAGACCTTTGCTGATGTGGGATCTAATGTGCCAAACAATTTTAATGACAGTATTTCCCTTGGTGATTCATATGATGAAGATATCCTGACGATGTATAGCCAAGGAGTGGATATGTCACCAGATGAGATGTTAGGAACACGTGCAGGTCGATCAAGTGAAGGAAGAAATTGTTCAAGTGGAAGTAAGATAAAACAGGGTTGCCAACATTATGAAACAGTAGAGGTGATCAAGAATTCAATGGAATTTGCAAATGATCAATTAAAAAACAGTAGCAGATTGGTCAAAAGAAAAACGTGCAACAGAGGTCGAATTGCGTGA

mRNA sequence

ATGAAACATTCTTCGATACGGAATAGTCATCCTGCAGCCAAAGGACTTCTACACAAATCATTTCCATATTATGATGATCTGTCCTATGTCTTTGGCAAAGATCGGGCAACGGGAGCACGTTCAGAGACCTTTGCTGATGTGGGATCTAATGTGCCAAACAATTTTAATGACAGTATTTCCCTTGGTGATTCATATGATGAAGATATCCTGACGATGTATAGCCAAGGAGTGGATATGTCACCAGATGAGATGTTAGGAACACGTGCAGGTCGATCAAGTGAAGGAAGAAATTGTTCAAGTGGAAGTAAGATAAAACAGGGTTGCCAACATTATGAAACAGTAGAGGTGATCAAGAATTCAATGGAATTTGCAAATGATCAATTAAAAAACAGTAGCAGATTGGTCAAAAGAAAAACGTGCAACAGAGGTCGAATTGCGTGA

Coding sequence (CDS)

ATGAAACATTCTTCGATACGGAATAGTCATCCTGCAGCCAAAGGACTTCTACACAAATCATTTCCATATTATGATGATCTGTCCTATGTCTTTGGCAAAGATCGGGCAACGGGAGCACGTTCAGAGACCTTTGCTGATGTGGGATCTAATGTGCCAAACAATTTTAATGACAGTATTTCCCTTGGTGATTCATATGATGAAGATATCCTGACGATGTATAGCCAAGGAGTGGATATGTCACCAGATGAGATGTTAGGAACACGTGCAGGTCGATCAAGTGAAGGAAGAAATTGTTCAAGTGGAAGTAAGATAAAACAGGGTTGCCAACATTATGAAACAGTAGAGGTGATCAAGAATTCAATGGAATTTGCAAATGATCAATTAAAAAACAGTAGCAGATTGGTCAAAAGAAAAACGTGCAACAGAGGTCGAATTGCGTGA

Protein sequence

MKHSSIRNSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFADVGSNVPNNFNDSISLGDSYDEDILTMYSQGVDMSPDEMLGTRAGRSSEGRNCSSGSKIKQGCQHYETVEVIKNSMEFANDQLKNSSRLVKRKTCNRGRIA

Homology

[Close]

BLAST of PI0012519 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 2.6e-45
Identity = 98/130 (75.38%), Postives = 109/130 (83.85%), Query Frame = 0


Query: 9   SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFADVGSNVPNNFNDSISLGDSYDED 68
           SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETF +VGSNV N FND+I LGDS+DED
Sbjct: 114 SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDED 173

Query: 69  ILTMYSQGVDMSPDEMLGTRAGRSSEGRNCSSGSKIKQGCQHYETVEVIKNSMEFANDQL 128
           I TMYSQGV MSPDEM G RAG++SE RNCSS SK K+G + YETVEVI++ MEF N+QL
Sbjct: 174 IPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQL 233

Query: 129 KNSSRLVKRK 139
           K  +   K K
Sbjct: 234 KAIADWPKEK 243

[Close]

BLAST of PI0012519 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 2.6e-45
Identity = 98/130 (75.38%), Postives = 109/130 (83.85%), Query Frame = 0


Query: 9   SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFADVGSNVPNNFNDSISLGDSYDED 68
           SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETF +VGSNV N FND+I LGDS+DED
Sbjct: 114 SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDED 173

Query: 69  ILTMYSQGVDMSPDEMLGTRAGRSSEGRNCSSGSKIKQGCQHYETVEVIKNSMEFANDQL 128
           I TMYSQGV MSPDEM G RAG++SE RNCSS SK K+G + YETVEVI++ MEF N+QL
Sbjct: 174 IPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQL 233

Query: 129 KNSSRLVKRK 139
           K  +   K K
Sbjct: 234 KAIADWPKEK 243

[Close]

BLAST of PI0012519 vs. ExPASy TrEMBL
Match: A0A5D3CVB7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00360 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.7e-44
Identity = 95/130 (73.08%), Postives = 109/130 (83.85%), Query Frame = 0


Query: 9   SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFADVGSNVPNNFNDSISLGDSYDED 68
           SHP  KGLL+KSFPYYDD+SYVFGKD+AT ARSETFADVGSN+PN FND + LGDS+ ED
Sbjct: 13  SHPTVKGLLNKSFPYYDDVSYVFGKDQATEARSETFADVGSNIPNMFNDGVPLGDSHHED 72

Query: 69  ILTMYSQGVDMSPDEMLGTRAGRSSEGRNCSSGSKIKQGCQHYETVEVIKNSMEFANDQL 128
           I TMYSQGV MS DEM GTRAG++SE RNCSS SK KQG QHYETVEVI+++M+F NDQL
Sbjct: 73  IPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYETVEVIRSAMKFGNDQL 132

Query: 129 KNSSRLVKRK 139
           K  +  +K K
Sbjct: 133 KAIADWLKEK 142

[Close]

BLAST of PI0012519 vs. ExPASy TrEMBL
Match: A0A5A7USN6 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00100 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.7e-44
Identity = 99/151 (65.56%), Postives = 115/151 (76.16%), Query Frame = 0


Query: 1   MKHSSIRN-------------SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFADV 60
           MKHSS+RN             SHPAAKGLLHKSFPYYDDLSYVFGKDRAT  RSETF+ V
Sbjct: 148 MKHSSVRNVIERAFGLLKGRWSHPAAKGLLHKSFPYYDDLSYVFGKDRATKERSETFSGV 207

Query: 61  GSNVPNNFNDSISLGDSYDEDILTMYSQGVDMSPDEMLGTRAGRSSEGRNCSSGSKIKQG 120
           GSNVPN FND + LGDS+++DI  MYSQGV MS DEM G RAG++SE RNCSSGSK K+G
Sbjct: 208 GSNVPNMFNDGVPLGDSHNQDIPMMYSQGVHMSIDEMFGIRAGQASERRNCSSGSKRKRG 267

Query: 121 CQHYETVEVIKNSMEFANDQLKNSSRLVKRK 139
            +HYE VEVI++ M+F N+QLK  +   K+K
Sbjct: 268 SKHYEMVEVIRSVMKFGNNQLKTIADWPKKK 298

[Close]

BLAST of PI0012519 vs. ExPASy TrEMBL
Match: A0A5A7SQU2 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold472G00070 PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 3.5e-42
Identity = 92/127 (72.44%), Postives = 103/127 (81.10%), Query Frame = 0


Query: 12  AAKGLLHKSFPYYDDLSYVFGKDRATGARSETFADVGSNVPNNFNDSISLGDSYDEDILT 71
           A K LLHKSFPYYDDL YVFGKDRAT ARSETFADVGSNVPN FN  + L DS+D+DI  
Sbjct: 310 APKDLLHKSFPYYDDLFYVFGKDRATRARSETFADVGSNVPNMFNGDVPLDDSHDQDIPM 369

Query: 72  MYSQGVDMSPDEMLGTRAGRSSEGRNCSSGSKIKQGCQHYETVEVIKNSMEFANDQLKNS 131
           MYSQGV MSPDEM G RAG++SE +NCSSGSK KQG +HYETVEVIK+++EF NDQLK  
Sbjct: 370 MYSQGVHMSPDEMFGIRAGQASERKNCSSGSKRKQGSKHYETVEVIKSAIEFGNDQLKAI 429

Query: 132 SRLVKRK 139
           +   K K
Sbjct: 430 ANWPKEK 436

[Close]

BLAST of PI0012519 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 191.4 bits (485), Expect = 5.4e-45
Identity = 98/130 (75.38%), Postives = 109/130 (83.85%), Query Frame = 0


Query: 9   SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFADVGSNVPNNFNDSISLGDSYDED 68
           SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETF +VGSNV N FND+I LGDS+DED
Sbjct: 114 SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDED 173

Query: 69  ILTMYSQGVDMSPDEMLGTRAGRSSEGRNCSSGSKIKQGCQHYETVEVIKNSMEFANDQL 128
           I TMYSQGV MSPDEM G RAG++SE RNCSS SK K+G + YETVEVI++ MEF N+QL
Sbjct: 174 IPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQL 233

Query: 129 KNSSRLVKRK 139
           K  +   K K
Sbjct: 234 KAIADWPKEK 243

[Close]

BLAST of PI0012519 vs. NCBI nr
Match: KAA0056515.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK12085.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 188.7 bits (478), Expect = 3.5e-44
Identity = 99/151 (65.56%), Postives = 115/151 (76.16%), Query Frame = 0


Query: 1   MKHSSIRN-------------SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFADV 60
           MKHSS+RN             SHPAAKGLLHKSFPYYDDLSYVFGKDRAT  RSETF+ V
Sbjct: 148 MKHSSVRNVIERAFGLLKGRWSHPAAKGLLHKSFPYYDDLSYVFGKDRATKERSETFSGV 207

Query: 61  GSNVPNNFNDSISLGDSYDEDILTMYSQGVDMSPDEMLGTRAGRSSEGRNCSSGSKIKQG 120
           GSNVPN FND + LGDS+++DI  MYSQGV MS DEM G RAG++SE RNCSSGSK K+G
Sbjct: 208 GSNVPNMFNDGVPLGDSHNQDIPMMYSQGVHMSIDEMFGIRAGQASERRNCSSGSKRKRG 267

Query: 121 CQHYETVEVIKNSMEFANDQLKNSSRLVKRK 139
            +HYE VEVI++ M+F N+QLK  +   K+K
Sbjct: 268 SKHYEMVEVIRSVMKFGNNQLKTIADWPKKK 298

[Close]

BLAST of PI0012519 vs. NCBI nr
Match: KAA0042340.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK15465.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 188.7 bits (478), Expect = 3.5e-44
Identity = 95/130 (73.08%), Postives = 109/130 (83.85%), Query Frame = 0


Query: 9   SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFADVGSNVPNNFNDSISLGDSYDED 68
           SHP  KGLL+KSFPYYDD+SYVFGKD+AT ARSETFADVGSN+PN FND + LGDS+ ED
Sbjct: 13  SHPTVKGLLNKSFPYYDDVSYVFGKDQATEARSETFADVGSNIPNMFNDGVPLGDSHHED 72

Query: 69  ILTMYSQGVDMSPDEMLGTRAGRSSEGRNCSSGSKIKQGCQHYETVEVIKNSMEFANDQL 128
           I TMYSQGV MS DEM GTRAG++SE RNCSS SK KQG QHYETVEVI+++M+F NDQL
Sbjct: 73  IPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYETVEVIRSAMKFGNDQL 132

Query: 129 KNSSRLVKRK 139
           K  +  +K K
Sbjct: 133 KAIADWLKEK 142

[Close]

BLAST of PI0012519 vs. NCBI nr
Match: KAA0033290.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 181.0 bits (458), Expect = 7.3e-42
Identity = 92/127 (72.44%), Postives = 103/127 (81.10%), Query Frame = 0


Query: 12  AAKGLLHKSFPYYDDLSYVFGKDRATGARSETFADVGSNVPNNFNDSISLGDSYDEDILT 71
           A K LLHKSFPYYDDL YVFGKDRAT ARSETFADVGSNVPN FN  + L DS+D+DI  
Sbjct: 310 APKDLLHKSFPYYDDLFYVFGKDRATRARSETFADVGSNVPNMFNGDVPLDDSHDQDIPM 369

Query: 72  MYSQGVDMSPDEMLGTRAGRSSEGRNCSSGSKIKQGCQHYETVEVIKNSMEFANDQLKNS 131
           MYSQGV MSPDEM G RAG++SE +NCSSGSK KQG +HYETVEVIK+++EF NDQLK  
Sbjct: 370 MYSQGVHMSPDEMFGIRAGQASERKNCSSGSKRKQGSKHYETVEVIKSAIEFGNDQLKAI 429

Query: 132 SRLVKRK 139
           +   K K
Sbjct: 430 ANWPKEK 436

[Close]

BLAST of PI0012519 vs. NCBI nr
Match: KAA0031678.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 177.9 bits (450), Expect = 6.1e-41
Identity = 91/130 (70.00%), Postives = 104/130 (80.00%), Query Frame = 0


Query: 9   SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFADVGSNVPNNFNDSISLGDSYDED 68
           SHPAAKGLLHKSFPYYDDLSYVFG D ATGA SETFAD GSNV N FND + LGDS+++D
Sbjct: 71  SHPAAKGLLHKSFPYYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDGVPLGDSHNQD 130

Query: 69  ILTMYSQGVDMSPDEMLGTRAGRSSEGRNCSSGSKIKQGCQHYETVEVIKNSMEFANDQL 128
           ILT+YSQGV MS DE+ G RAG++SE RN SSGSK K+G +HYE VEVI ++ EF NDQL
Sbjct: 131 ILTIYSQGVHMSLDEIFGIRAGQASERRNYSSGSKRKRGSKHYEMVEVISSATEFGNDQL 190

Query: 129 KNSSRLVKRK 139
           K  +   K K
Sbjct: 191 KTITDWPKEK 200

The following BLAST results are available for this feature:

BLAST of PI0012519 vs.


Match Name	E-value	Identity	Description

BLAST of PI0012519 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U0H7	2.6e-45	75.38	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B4L3	2.6e-45	75.38	uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=...	[more]
A0A5D3CVB7	1.7e-44	73.08	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7USN6	1.7e-44	65.56	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7SQU2	3.5e-42	72.44	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of PI0012519 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441954.1	5.4e-45	75.38	PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret...	[more]
KAA0056515.1	3.5e-44	65.56	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK12085.1 putative nucleas...	[more]
KAA0042340.1	3.5e-44	73.08	retrotransposon protein [Cucumis melo var. makuwa] >TYK15465.1 retrotransposon p...	[more]
KAA0033290.1	7.3e-42	72.44	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nucleas...	[more]
KAA0031678.1	6.1e-41	70.00	retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon p...	[more]

BLAST of PI0012519 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 5..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0012519.1	PI0012519.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding