PI0012488 (gene) Melon (PI 482460) v1

Overview


Name	PI0012488
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Transcription factor bHLH101-like
Location	chr08: 5443450 .. 5443716 (+)
RNA-Seq Expression	PI0012488
Synteny	PI0012488

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGCCGTTCTTTCAGTTCTCATCATTGCAGCCATCTCAAGAGGTCAAGCTAGAGAGCTGTCCTCCTCCATCGGCTGGTGTCGGTGGATGTATCAGTGTCGTTGGTGACGATGTCATCGCCATGGCTAAGAAACTTAAACACAATGCTAACGAGCGTGACCGTCGAAGAAAGATCAACTCGCTCTATTATTCTCTCCGTTGCTTGCTCCCTCCTACAAATTCAATGGTAGGTTTTGCTTCATATGATATATCTTCTATCACCTAG

mRNA sequence

ATGGGGCCGTTCTTTCAGTTCTCATCATTGCAGCCATCTCAAGAGGTCAAGCTAGAGAGCTGTCCTCCTCCATCGGCTGGTGTCGGTGGATGTATCAGTGTCGTTGGTGACGATGTCATCGCCATGGCTAAGAAACTTAAACACAATGCTAACGAGCGTGACCGTCGAAGAAAGATCAACTCGCTCTATTATTCTCTCCGTTGCTTGCTCCCTCCTACAAATTCAATGGTAGGTTTTGCTTCATATGATATATCTTCTATCACCTAG

Coding sequence (CDS)

ATGGGGCCGTTCTTTCAGTTCTCATCATTGCAGCCATCTCAAGAGGTCAAGCTAGAGAGCTGTCCTCCTCCATCGGCTGGTGTCGGTGGATGTATCAGTGTCGTTGGTGACGATGTCATCGCCATGGCTAAGAAACTTAAACACAATGCTAACGAGCGTGACCGTCGAAGAAAGATCAACTCGCTCTATTATTCTCTCCGTTGCTTGCTCCCTCCTACAAATTCAATGGTAGGTTTTGCTTCATATGATATATCTTCTATCACCTAG

Protein sequence

MGPFFQFSSLQPSQEVKLESCPPPSAGVGGCISVVGDDVIAMAKKLKHNANERDRRRKINSLYYSLRCLLPPTNSMVGFASYDISSIT

Homology

[Close]

BLAST of PI0012488 vs. ExPASy Swiss-Prot
Match: Q9FYE6 (Transcription factor bHLH101 OS=Arabidopsis thaliana OX=3702 GN=BHLH101 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.2e-05
Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 0


Query: 40 IAMAKKLKHNANERDRRRKINSLYYSLRCLLP 72
          + + KKL HNA+ERDRRRK+N+LY SLR LLP
Sbjct: 62 VVLEKKLNHNASERDRRRKLNALYSSLRALLP 93

[Close]

BLAST of PI0012488 vs. ExPASy Swiss-Prot
Match: Q9ZVB5 (Transcription factor bHLH100 OS=Arabidopsis thaliana OX=3702 GN=BHLH100 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.0e-05
Identity = 23/38 (60.53%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 37 DDVIAMAKKLKHNANERDRRRKINSLYYSLRCLLPPTN 75
          D+ + M KKL HNA+ER+RR+KIN+++ SLR  LPPTN
Sbjct: 56 DNPVVM-KKLNHNASERERRKKINTMFSSLRSCLPPTN 92

[Close]

BLAST of PI0012488 vs. ExPASy Swiss-Prot
Match: Q9M1K0 (Transcription factor ORG3 OS=Arabidopsis thaliana OX=3702 GN=ORG3 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 7.6e-05
Identity = 23/35 (65.71%), Postives = 27/35 (77.14%), Query Frame = 0


Query: 37  DDVIAMAKKLKHNANERDRRRKINSLYYSLRCLLP 72
           D+   + KKL HNA+ERDRRRKINSL+ SLR  LP
Sbjct: 70  DNNPVVVKKLNHNASERDRRRKINSLFSSLRSCLP 104

[Close]

BLAST of PI0012488 vs. ExPASy Swiss-Prot
Match: Q9M1K1 (Transcription factor ORG2 OS=Arabidopsis thaliana OX=3702 GN=ORG2 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.9e-04
Identity = 21/38 (55.26%), Postives = 29/38 (76.32%), Query Frame = 0


Query: 37  DDVIAMAKKLKHNANERDRRRKINSLYYSLRCLLPPTN 75
           D+   + KKL HNA+ERDRR+KIN+L+ SLR  LP ++
Sbjct: 65  DNNPVVVKKLNHNASERDRRKKINTLFSSLRSCLPASD 102

[Close]

BLAST of PI0012488 vs. ExPASy TrEMBL
Match: A0A5A7SIL4 (Transcription factor bHLH101-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1479G00080 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.6e-29
Identity = 73/89 (82.02%), Postives = 77/89 (86.52%), Query Frame = 0


Query: 1  MGPFFQFSSLQPSQEVKLESCPP-PSAGVGGCISVVGDDVIAMAKKLKHNANERDRRRKI 60
          M PF+QFSSLQPSQ+VKLESCP   SAG      VVGDD+ AM KKLKHNANERDRRRKI
Sbjct: 1  MEPFYQFSSLQPSQQVKLESCPTLLSAG------VVGDDITAMDKKLKHNANERDRRRKI 60

Query: 61 NSLYYSLRCLLPPTNSMVGFASYDISSIT 89
          NSLYYSLRCLLPPT+SMVGFASYDISSIT
Sbjct: 61 NSLYYSLRCLLPPTDSMVGFASYDISSIT 83

[Close]

BLAST of PI0012488 vs. ExPASy TrEMBL
Match: A0A1S3C1M0 (transcription factor bHLH101-like OS=Cucumis melo OX=3656 GN=LOC103495812 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 8.4e-23
Identity = 61/77 (79.22%), Postives = 65/77 (84.42%), Query Frame = 0


Query: 1  MGPFFQFSSLQPSQEVKLESCPP-PSAGVGGCISVVGDDVIAMAKKLKHNANERDRRRKI 60
          M PF+QFSSLQPSQ+VKLESCP   SAG      VVGDD+ AM KKLKHNANERDRRRKI
Sbjct: 1  MEPFYQFSSLQPSQQVKLESCPTLLSAG------VVGDDITAMDKKLKHNANERDRRRKI 60

Query: 61 NSLYYSLRCLLPPTNSM 77
          NSLYYSLRCLLPPT+SM
Sbjct: 61 NSLYYSLRCLLPPTDSM 71

[Close]

BLAST of PI0012488 vs. ExPASy TrEMBL
Match: A0A6J1EBF8 (transcription factor bHLH101-like OS=Cucurbita moschata OX=3662 GN=LOC111432509 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.3e-17
Identity = 50/74 (67.57%), Postives = 57/74 (77.03%), Query Frame = 0


Query: 4   FFQFSSLQPSQEVKLESCPPPSAGVG---GCISVVGDDVIAMAKKLKHNANERDRRRKIN 63
           F QFSS +PS  VK+ESC PPSAG G   G     GDD +A+AKKLKHNA+ERDRR+K+N
Sbjct: 31  FIQFSSPRPSHHVKVESCSPPSAGDGRHRGGGGCGGDDPVAVAKKLKHNASERDRRKKMN 90

Query: 64  SLYYSLRCLLPPTN 75
           SLY SLRCLLP TN
Sbjct: 91  SLYTSLRCLLPSTN 104

[Close]

BLAST of PI0012488 vs. ExPASy TrEMBL
Match: A0A6J1HRN3 (transcription factor bHLH101-like OS=Cucurbita maxima OX=3661 GN=LOC111466098 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 9.0e-17
Identity = 50/74 (67.57%), Postives = 56/74 (75.68%), Query Frame = 0


Query: 4   FFQFSSLQPSQEVKLESCPPPSAGVG---GCISVVGDDVIAMAKKLKHNANERDRRRKIN 63
           F QFSS QPS  VK+ESC PPSAG G   G      DD +A+AKKLKHNA+ERDRR+K+N
Sbjct: 31  FIQFSSPQPSHHVKVESCSPPSAGDGRHRGGGGFGSDDPVAVAKKLKHNASERDRRKKMN 90

Query: 64  SLYYSLRCLLPPTN 75
           SLY SLRCLLP TN
Sbjct: 91  SLYTSLRCLLPSTN 104

[Close]

BLAST of PI0012488 vs. ExPASy TrEMBL
Match: A0A2J6KMM6 (BHLH domain-containing protein OS=Lactuca sativa OX=4236 GN=LSAT_5X158120 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.9e-06
Identity = 31/71 (43.66%), Postives = 47/71 (66.20%), Query Frame = 0


Query: 4   FFQFSSLQPSQEVKLESCPPPSAGVGGCISVVGDDVIAMAKKLKHNANERDRRRKINSLY 63
           F +F S   S +++L+  P  S+  GG ++    D + + KKL HNA+ERDRR+K+N+LY
Sbjct: 34  FLEFPS---SDQIQLDFTPENSSSFGGAVNRGKGDGMNVVKKLNHNASERDRRKKVNNLY 93

Query: 64  YSLRCLLPPTN 75
            SLR +LP +N
Sbjct: 94  ESLRSVLPMSN 101

[Close]

BLAST of PI0012488 vs. NCBI nr
Match: KAA0026018.1 (transcription factor bHLH101-like [Cucumis melo var. makuwa] >TYK21925.1 transcription factor bHLH101-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 138.3 bits (347), Expect = 3.3e-29
Identity = 73/89 (82.02%), Postives = 77/89 (86.52%), Query Frame = 0


Query: 1  MGPFFQFSSLQPSQEVKLESCPP-PSAGVGGCISVVGDDVIAMAKKLKHNANERDRRRKI 60
          M PF+QFSSLQPSQ+VKLESCP   SAG      VVGDD+ AM KKLKHNANERDRRRKI
Sbjct: 1  MEPFYQFSSLQPSQQVKLESCPTLLSAG------VVGDDITAMDKKLKHNANERDRRRKI 60

Query: 61 NSLYYSLRCLLPPTNSMVGFASYDISSIT 89
          NSLYYSLRCLLPPT+SMVGFASYDISSIT
Sbjct: 61 NSLYYSLRCLLPPTDSMVGFASYDISSIT 83

[Close]

BLAST of PI0012488 vs. NCBI nr
Match: XP_008455701.1 (PREDICTED: transcription factor bHLH101-like [Cucumis melo])

HSP 1 Score: 115.9 bits (289), Expect = 1.7e-22
Identity = 61/77 (79.22%), Postives = 65/77 (84.42%), Query Frame = 0


Query: 1  MGPFFQFSSLQPSQEVKLESCPP-PSAGVGGCISVVGDDVIAMAKKLKHNANERDRRRKI 60
          M PF+QFSSLQPSQ+VKLESCP   SAG      VVGDD+ AM KKLKHNANERDRRRKI
Sbjct: 1  MEPFYQFSSLQPSQQVKLESCPTLLSAG------VVGDDITAMDKKLKHNANERDRRRKI 60

Query: 61 NSLYYSLRCLLPPTNSM 77
          NSLYYSLRCLLPPT+SM
Sbjct: 61 NSLYYSLRCLLPPTDSM 71

[Close]

BLAST of PI0012488 vs. NCBI nr
Match: XP_004144366.2 (transcription factor bHLH101 [Cucumis sativus] >KAE8649686.1 hypothetical protein Csa_012494 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 2.9e-22
Identity = 61/77 (79.22%), Postives = 64/77 (83.12%), Query Frame = 0


Query: 1  MGPFFQFSSLQPSQEVKLESCPPP-SAGVGGCISVVGDDVIAMAKKLKHNANERDRRRKI 60
          M PFFQFSSLQPSQ+VKLESCP P SAG      VV DD+  MAKKLKHNANERDRRRKI
Sbjct: 1  MEPFFQFSSLQPSQQVKLESCPTPLSAG------VVADDITDMAKKLKHNANERDRRRKI 60

Query: 61 NSLYYSLRCLLPPTNSM 77
          NSLY SLRCLLPPT+SM
Sbjct: 61 NSLYCSLRCLLPPTDSM 71

[Close]

BLAST of PI0012488 vs. NCBI nr
Match: XP_038882377.1 (transcription factor bHLH101-like [Benincasa hispida])

HSP 1 Score: 108.6 bits (270), Expect = 2.8e-20
Identity = 56/79 (70.89%), Postives = 60/79 (75.95%), Query Frame = 0


Query: 3   PFFQFSSLQPSQEVKLESCPPPSAG-----VGGCISVVGDDVIAMAKKLKHNANERDRRR 62
           PF QFSS Q SQ VKLE+C PPSAG      GGC   V  D+ A+AKKLKHNA+ERDRRR
Sbjct: 37  PFIQFSSPQSSQHVKLEACSPPSAGDGGHRGGGCTGNVNHDLTAIAKKLKHNASERDRRR 96

Query: 63  KINSLYYSLRCLLPPTNSM 77
           KINSLYYSLRCLLP TN M
Sbjct: 97  KINSLYYSLRCLLPATNPM 115

[Close]

BLAST of PI0012488 vs. NCBI nr
Match: KAG6595594.1 (Transcription factor ORG2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 98.2 bits (243), Expect = 3.7e-17
Identity = 51/74 (68.92%), Postives = 57/74 (77.03%), Query Frame = 0


Query: 4   FFQFSSLQPSQEVKLESCPPPSAGVG---GCISVVGDDVIAMAKKLKHNANERDRRRKIN 63
           F QFSS QPS  VK+ESC PPSAG G   G     GDD +A+AKKLKHNA+ERDRR+K+N
Sbjct: 31  FIQFSSPQPSHHVKVESCSPPSAGDGRHRGGGGCGGDDPVAVAKKLKHNASERDRRKKMN 90

Query: 64  SLYYSLRCLLPPTN 75
           SLY SLRCLLP TN
Sbjct: 91  SLYTSLRCLLPSTN 104

[Close]

BLAST of PI0012488 vs. TAIR 10
Match: AT5G04150.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 50.4 bits (119), Expect = 8.3e-07
Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 0


Query: 40 IAMAKKLKHNANERDRRRKINSLYYSLRCLLP 72
          + + KKL HNA+ERDRRRK+N+LY SLR LLP
Sbjct: 62 VVLEKKLNHNASERDRRRKLNALYSSLRALLP 93

[Close]

BLAST of PI0012488 vs. TAIR 10
Match: AT2G41240.1 (basic helix-loop-helix protein 100 )

HSP 1 Score: 49.7 bits (117), Expect = 1.4e-06
Identity = 23/38 (60.53%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 37 DDVIAMAKKLKHNANERDRRRKINSLYYSLRCLLPPTN 75
          D+ + M KKL HNA+ER+RR+KIN+++ SLR  LPPTN
Sbjct: 56 DNPVVM-KKLNHNASERERRKKINTMFSSLRSCLPPTN 92

[Close]

BLAST of PI0012488 vs. TAIR 10
Match: AT2G41240.2 (basic helix-loop-helix protein 100 )

HSP 1 Score: 49.7 bits (117), Expect = 1.4e-06
Identity = 23/38 (60.53%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 37 DDVIAMAKKLKHNANERDRRRKINSLYYSLRCLLPPTN 75
          D+ + M KKL HNA+ER+RR+KIN+++ SLR  LPPTN
Sbjct: 56 DNPVVM-KKLNHNASERERRKKINTMFSSLRSCLPPTN 92

[Close]

BLAST of PI0012488 vs. TAIR 10
Match: AT3G56980.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 47.8 bits (112), Expect = 5.4e-06
Identity = 23/35 (65.71%), Postives = 27/35 (77.14%), Query Frame = 0


Query: 37  DDVIAMAKKLKHNANERDRRRKINSLYYSLRCLLP 72
           D+   + KKL HNA+ERDRRRKINSL+ SLR  LP
Sbjct: 70  DNNPVVVKKLNHNASERDRRRKINSLFSSLRSCLP 104

[Close]

BLAST of PI0012488 vs. TAIR 10
Match: AT3G56970.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 45.8 bits (107), Expect = 2.0e-05
Identity = 21/38 (55.26%), Postives = 29/38 (76.32%), Query Frame = 0


Query: 37  DDVIAMAKKLKHNANERDRRRKINSLYYSLRCLLPPTN 75
           D+   + KKL HNA+ERDRR+KIN+L+ SLR  LP ++
Sbjct: 65  DNNPVVVKKLNHNASERDRRKKINTLFSSLRSCLPASD 102

The following BLAST results are available for this feature:

BLAST of PI0012488 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FYE6	1.2e-05	68.75	Transcription factor bHLH101 OS=Arabidopsis thaliana OX=3702 GN=BHLH101 PE=1 SV=...	[more]
Q9ZVB5	2.0e-05	60.53	Transcription factor bHLH100 OS=Arabidopsis thaliana OX=3702 GN=BHLH100 PE=1 SV=...	[more]
Q9M1K0	7.6e-05	65.71	Transcription factor ORG3 OS=Arabidopsis thaliana OX=3702 GN=ORG3 PE=1 SV=1	[more]
Q9M1K1	2.9e-04	55.26	Transcription factor ORG2 OS=Arabidopsis thaliana OX=3702 GN=ORG2 PE=1 SV=1	[more]

BLAST of PI0012488 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SIL4	1.6e-29	82.02	Transcription factor bHLH101-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3C1M0	8.4e-23	79.22	transcription factor bHLH101-like OS=Cucumis melo OX=3656 GN=LOC103495812 PE=4 S...	[more]
A0A6J1EBF8	5.3e-17	67.57	transcription factor bHLH101-like OS=Cucurbita moschata OX=3662 GN=LOC111432509 ...	[more]
A0A6J1HRN3	9.0e-17	67.57	transcription factor bHLH101-like OS=Cucurbita maxima OX=3661 GN=LOC111466098 PE...	[more]
A0A2J6KMM6	1.9e-06	43.66	BHLH domain-containing protein OS=Lactuca sativa OX=4236 GN=LSAT_5X158120 PE=4 S...	[more]

BLAST of PI0012488 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0026018.1	3.3e-29	82.02	transcription factor bHLH101-like [Cucumis melo var. makuwa] >TYK21925.1 transcr...	[more]
XP_008455701.1	1.7e-22	79.22	PREDICTED: transcription factor bHLH101-like [Cucumis melo]	[more]
XP_004144366.2	2.9e-22	79.22	transcription factor bHLH101 [Cucumis sativus] >KAE8649686.1 hypothetical protei...	[more]
XP_038882377.1	2.8e-20	70.89	transcription factor bHLH101-like [Benincasa hispida]	[more]
KAG6595594.1	3.7e-17	68.92	Transcription factor ORG2, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of PI0012488 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G04150.1	8.3e-07	68.75	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT2G41240.1	1.4e-06	60.53	basic helix-loop-helix protein 100	[more]
AT2G41240.2	1.4e-06	60.53	basic helix-loop-helix protein 100	[more]
AT3G56980.1	5.4e-06	65.71	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G56970.1	2.0e-05	55.26	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 41..83 e-value: 8.9E-7 score: 30.8
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 44..74
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 44..71 e-value: 3.0E-7 score: 30.3
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 43..88 score: 10.575443
IPR015660	Achaete-scute transcription factor-related	PANTHER	PTHR13935	ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED	coord: 26..76
None	No IPR available	PANTHER	PTHR13935:SF41	TRANSCRIPTION FACTOR ORG2-RELATED	coord: 26..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0012488.1	PI0012488.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:2000112	regulation of cellular macromolecule biosynthetic process
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity