PI0012456 (gene) Melon (PI 482460) v1

Overview


Name	PI0012456
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag/pol protein
Location	chr01: 7117536 .. 7118690 (+)
RNA-Seq Expression	PI0012456
Synteny	PI0012456

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAACATACACCTCATCAGTAAATTTTATCTTAACAGATTTTAACTTATTAATTAAAGTGGTGACCTCATTGATATAGGAATTAACTAAAACATCCTCGACCATTTGCATGTTGAAATATTTCTTAAGGAATAAGTCTTAGCATTGGTAGATGGTTTCTCATATTTGTTTGTAAGCGCTTCATCAACTTCACTACATTAGTCTCATTAGCTACAAAACTAGCAATGTTCATTGACAAACATATTCTGATGATTGCAACTACTTCTTCATTCAGGTTCTTCCAAGCTTCATCCGACATCTATTTTGGTTTCTCCTTCAATTGCCTTATGCAATTTCTTGTAAGTCAAGAAATATTTAACTTGCATCTTCCAATACCCAAAATTTTTCCTTCAAATTTCATGATTATTTCGAAACCTCTTGGCTATGATGATCCCATGACTTTTGAACTAAATTCCTGATACCACTTATTGGAAATTTATGCTTAAATATAAATAAAATGCGGAAACCGAATTATATCTAAGATTTCCACTTCCACATGTTTGAGCCAAAAAGAGTAATGATCATAAAATTATCATATAATAAAGAGAAGTGAAAAGAGAATGGCACAAAAAATTATGTTGGTTTGCCTACAACTGCAGGTATTCAGGATTACGTCAAGTCTTCTACAACTGCAGGTTCTTCTGCAACTTTAGGTTCTGCTATGATGAAGACTGTAAAGTTCAAACTTGCGCTACAAAACTCTTTCCAAATAGCCCAATACGAATTATTTTGTTCCTTATACCATACTCTTACTCTGGGTAAGGAAAAGGAAGTGGAAGCAAATGTTGCTACCACTAAAAAGAAGTTTTTAAGAGGATCGTCCTCTAAAACCAAAGTTGGTCCCACAAACATGAAAAAGAAGAAGGAAAAGGGAAAGACTCCCAAGACGAGCAAGGGAAAGAAAGCTACAGATAAATGTATATGTTACCACTATAACCAAAATGGTCATTGGTTGAGGAACTGTCTGAAGTACCTTGCAAAAAAGAAAGCAGAGAAGGAAGCACAAGGTAAATATGATTTACTAGTTGTTGAAATATGTTAAGTGGATACTTCCACCTGGATACTAGATTCATGAGTCACTAATCATATTTACTTCTCGTTTCAGGAAAATAG

mRNA sequence

ATGAATAACATACACCTCATCAGTATTCAGGATTACGTCAAGTCTTCTACAACTGCAGGTTCTTCTGCAACTTTAGGTTCTGCTATGATGAAGACTGTAAAGTTCAAACTTGCGCTACAAAACTCTTTCCAAATAGCCCAATACGAATTATTTTGTTCCTTATACCATACTCTTACTCTGGGTAAGGAAAAGGAAGTGGAAGCAAATGTTGCTACCACTAAAAAGAAGTTTTTAAGAGGATCGTCCTCTAAAACCAAAGTTGGTCCCACAAACATGAAAAAGAAGAAGGAAAAGGGAAAGACTCCCAAGACGAGCAAGGGAAAGAAAGCTACAGATAAATGTATATGTTACCACTATAACCAAAATGGTCATTGGTTGAGGAACTGTCTGAAGTACCTTGCAAAAAAGAAAGCAGAGAAGGAAGCACAAGGAAAATAG

Coding sequence (CDS)

ATGAATAACATACACCTCATCAGTATTCAGGATTACGTCAAGTCTTCTACAACTGCAGGTTCTTCTGCAACTTTAGGTTCTGCTATGATGAAGACTGTAAAGTTCAAACTTGCGCTACAAAACTCTTTCCAAATAGCCCAATACGAATTATTTTGTTCCTTATACCATACTCTTACTCTGGGTAAGGAAAAGGAAGTGGAAGCAAATGTTGCTACCACTAAAAAGAAGTTTTTAAGAGGATCGTCCTCTAAAACCAAAGTTGGTCCCACAAACATGAAAAAGAAGAAGGAAAAGGGAAAGACTCCCAAGACGAGCAAGGGAAAGAAAGCTACAGATAAATGTATATGTTACCACTATAACCAAAATGGTCATTGGTTGAGGAACTGTCTGAAGTACCTTGCAAAAAAGAAAGCAGAGAAGGAAGCACAAGGAAAATAG

Protein sequence

MNNIHLISIQDYVKSSTTAGSSATLGSAMMKTVKFKLALQNSFQIAQYELFCSLYHTLTLGKEKEVEANVATTKKKFLRGSSSKTKVGPTNMKKKKEKGKTPKTSKGKKATDKCICYHYNQNGHWLRNCLKYLAKKKAEKEAQGK

Homology

[Close]

BLAST of PI0012456 vs. ExPASy TrEMBL
Match: A0A5D3E7W3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold398G00700 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.0e-25
Identity = 67/94 (71.28%), Postives = 76/94 (80.85%), Query Frame = 0


Query: 55  YHTLTLGKEKEVEANVATTKKKFLRGSSSKTKVGPTNMK---KKKEKGKTPKTSKGKKAT 114
           + TLT+GK K+VEANVA TK+KF RGSSSKTK GP   K   KKK KGKTPK +KGKKA+
Sbjct: 226 FQTLTMGKGKQVEANVAITKRKFSRGSSSKTKAGPLKPKPQIKKKGKGKTPKQNKGKKAS 285

Query: 115 DKCICYHYNQNGHWLRNCLKYLAKKKAEKEAQGK 146
           +K  CYHY QNGHWLRNC KYLA+KKAEKE QG+
Sbjct: 286 EKGKCYHYGQNGHWLRNCPKYLAEKKAEKETQGQ 319

[Close]

BLAST of PI0012456 vs. ExPASy TrEMBL
Match: A0A5D3DMH3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G00800 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.7e-25
Identity = 66/94 (70.21%), Postives = 76/94 (80.85%), Query Frame = 0


Query: 55  YHTLTLGKEKEVEANVATTKKKFLRGSSSKTKVGPTNMKK---KKEKGKTPKTSKGKKAT 114
           +  LT GKEKE+EANVATTK+KF RGSSSK+KVGP+   +   KK KGKTPK +KGKK  
Sbjct: 116 FQNLTKGKEKEIEANVATTKEKFKRGSSSKSKVGPSRSNRKIEKKGKGKTPKQNKGKKTA 175

Query: 115 DKCICYHYNQNGHWLRNCLKYLAKKKAEKEAQGK 146
           +K  CYH  +NGHWLRNCLKYLA+KKAEKEAQGK
Sbjct: 176 EKGKCYHCGENGHWLRNCLKYLAQKKAEKEAQGK 209

[Close]

BLAST of PI0012456 vs. ExPASy TrEMBL
Match: A0A5D3C0C2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold351G00280 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.0e-25
Identity = 67/92 (72.83%), Postives = 75/92 (81.52%), Query Frame = 0


Query: 57  TLTLGKEKEVEANVATTKKKFLRGSSSKTKVGPTNMK---KKKEKGKTPKTSKGKKATDK 116
           TLT+GKEK+VEANV TTK+KF RGSSSK K GP+  K   KKKEKG+TPK +KGKKA +K
Sbjct: 116 TLTMGKEKQVEANVGTTKRKFSRGSSSKNKDGPSKPKPQIKKKEKGRTPKQNKGKKAAEK 175

Query: 117 CICYHYNQNGHWLRNCLKYLAKKKAEKEAQGK 146
             CYH +Q GHWLRNC KYLAKKKAEKE QGK
Sbjct: 176 GKCYHCSQKGHWLRNCPKYLAKKKAEKEMQGK 207

[Close]

BLAST of PI0012456 vs. ExPASy TrEMBL
Match: A0A5A7UL81 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G001950 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.0e-25
Identity = 67/92 (72.83%), Postives = 75/92 (81.52%), Query Frame = 0


Query: 57  TLTLGKEKEVEANVATTKKKFLRGSSSKTKVGPTNMK---KKKEKGKTPKTSKGKKATDK 116
           TLT+GKEK+VEANV TTK+KF RGSSSK K GP+  K   KKKEKG+TPK +KGKKA +K
Sbjct: 116 TLTMGKEKQVEANVGTTKRKFSRGSSSKNKDGPSKPKPQIKKKEKGRTPKQNKGKKAAEK 175

Query: 117 CICYHYNQNGHWLRNCLKYLAKKKAEKEAQGK 146
             CYH +Q GHWLRNC KYLAKKKAEKE QGK
Sbjct: 176 GKCYHCSQKGHWLRNCPKYLAKKKAEKEMQGK 207

[Close]

BLAST of PI0012456 vs. ExPASy TrEMBL
Match: A0A5D3DK93 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00930 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 6.6e-25
Identity = 66/94 (70.21%), Postives = 74/94 (78.72%), Query Frame = 0


Query: 55  YHTLTLGKEKEVEANVATTKKKFLRGSSSKTKVGPTNMK---KKKEKGKTPKTSKGKKAT 114
           + TLT+GKEK+VEANVATTK KF RGSSSK K GP+  K   KKK KGKTPK +KGKKA 
Sbjct: 148 FQTLTIGKEKQVEANVATTKGKFSRGSSSKNKTGPSKPKLQIKKKGKGKTPKQNKGKKAA 207

Query: 115 DKCICYHYNQNGHWLRNCLKYLAKKKAEKEAQGK 146
           +K  CYH  QNGHW+RNC KYL +KKAEKE QGK
Sbjct: 208 EKGKCYHCGQNGHWVRNCPKYLVEKKAEKETQGK 241

[Close]

BLAST of PI0012456 vs. NCBI nr
Match: TYK31700.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 126.3 bits (316), Expect = 2.1e-25
Identity = 67/94 (71.28%), Postives = 76/94 (80.85%), Query Frame = 0


Query: 55  YHTLTLGKEKEVEANVATTKKKFLRGSSSKTKVGPTNMK---KKKEKGKTPKTSKGKKAT 114
           + TLT+GK K+VEANVA TK+KF RGSSSKTK GP   K   KKK KGKTPK +KGKKA+
Sbjct: 226 FQTLTMGKGKQVEANVAITKRKFSRGSSSKTKAGPLKPKPQIKKKGKGKTPKQNKGKKAS 285

Query: 115 DKCICYHYNQNGHWLRNCLKYLAKKKAEKEAQGK 146
           +K  CYHY QNGHWLRNC KYLA+KKAEKE QG+
Sbjct: 286 EKGKCYHYGQNGHWLRNCPKYLAEKKAEKETQGQ 319

[Close]

BLAST of PI0012456 vs. NCBI nr
Match: KAA0059877.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK24827.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 125.6 bits (314), Expect = 3.6e-25
Identity = 66/94 (70.21%), Postives = 76/94 (80.85%), Query Frame = 0


Query: 55  YHTLTLGKEKEVEANVATTKKKFLRGSSSKTKVGPTNMKK---KKEKGKTPKTSKGKKAT 114
           +  LT GKEKE+EANVATTK+KF RGSSSK+KVGP+   +   KK KGKTPK +KGKK  
Sbjct: 116 FQNLTKGKEKEIEANVATTKEKFKRGSSSKSKVGPSRSNRKIEKKGKGKTPKQNKGKKTA 175

Query: 115 DKCICYHYNQNGHWLRNCLKYLAKKKAEKEAQGK 146
           +K  CYH  +NGHWLRNCLKYLA+KKAEKEAQGK
Sbjct: 176 EKGKCYHCGENGHWLRNCLKYLAQKKAEKEAQGK 209

[Close]

BLAST of PI0012456 vs. NCBI nr
Match: KAA0056663.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 124.8 bits (312), Expect = 6.1e-25
Identity = 67/92 (72.83%), Postives = 75/92 (81.52%), Query Frame = 0


Query: 57  TLTLGKEKEVEANVATTKKKFLRGSSSKTKVGPTNMK---KKKEKGKTPKTSKGKKATDK 116
           TLT+GKEK+VEANV TTK+KF RGSSSK K GP+  K   KKKEKG+TPK +KGKKA +K
Sbjct: 116 TLTMGKEKQVEANVGTTKRKFSRGSSSKNKDGPSKPKPQIKKKEKGRTPKQNKGKKAAEK 175

Query: 117 CICYHYNQNGHWLRNCLKYLAKKKAEKEAQGK 146
             CYH +Q GHWLRNC KYLAKKKAEKE QGK
Sbjct: 176 GKCYHCSQKGHWLRNCPKYLAKKKAEKEMQGK 207

[Close]

BLAST of PI0012456 vs. NCBI nr
Match: TYK04622.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 124.8 bits (312), Expect = 6.1e-25
Identity = 67/92 (72.83%), Postives = 75/92 (81.52%), Query Frame = 0


Query: 57  TLTLGKEKEVEANVATTKKKFLRGSSSKTKVGPTNMK---KKKEKGKTPKTSKGKKATDK 116
           TLT+GKEK+VEANV TTK+KF RGSSSK K GP+  K   KKKEKG+TPK +KGKKA +K
Sbjct: 116 TLTMGKEKQVEANVGTTKRKFSRGSSSKNKDGPSKPKPQIKKKEKGRTPKQNKGKKAAEK 175

Query: 117 CICYHYNQNGHWLRNCLKYLAKKKAEKEAQGK 146
             CYH +Q GHWLRNC KYLAKKKAEKE QGK
Sbjct: 176 GKCYHCSQKGHWLRNCPKYLAKKKAEKEMQGK 207

[Close]

BLAST of PI0012456 vs. NCBI nr
Match: KAA0061924.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK24004.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 123.6 bits (309), Expect = 1.4e-24
Identity = 66/94 (70.21%), Postives = 74/94 (78.72%), Query Frame = 0


Query: 55  YHTLTLGKEKEVEANVATTKKKFLRGSSSKTKVGPTNMK---KKKEKGKTPKTSKGKKAT 114
           + TLT+GKEK+VEANVATTK KF RGSSSK K GP+  K   KKK KGKTPK +KGKKA 
Sbjct: 148 FQTLTIGKEKQVEANVATTKGKFSRGSSSKNKTGPSKPKLQIKKKGKGKTPKQNKGKKAA 207

Query: 115 DKCICYHYNQNGHWLRNCLKYLAKKKAEKEAQGK 146
           +K  CYH  QNGHW+RNC KYL +KKAEKE QGK
Sbjct: 208 EKGKCYHCGQNGHWVRNCPKYLVEKKAEKETQGK 241

The following BLAST results are available for this feature:

BLAST of PI0012456 vs.


Match Name	E-value	Identity	Description

BLAST of PI0012456 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E7W3	1.0e-25	71.28	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold398G0070...	[more]
A0A5D3DMH3	1.7e-25	70.21	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G0080...	[more]
A0A5D3C0C2	3.0e-25	72.83	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold351G0028...	[more]
A0A5A7UL81	3.0e-25	72.83	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G0019...	[more]
A0A5D3DK93	6.6e-25	70.21	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G0093...	[more]

BLAST of PI0012456 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK31700.1	2.1e-25	71.28	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0059877.1	3.6e-25	70.21	gag/pol protein [Cucumis melo var. makuwa] >TYK24827.1 gag/pol protein [Cucumis ...	[more]
KAA0056663.1	6.1e-25	72.83	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK04622.1	6.1e-25	72.83	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0061924.1	1.4e-24	70.21	gag/pol protein [Cucumis melo var. makuwa] >TYK24004.1 gag/pol protein [Cucumis ...	[more]

BLAST of PI0012456 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 133..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..110
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 98..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0012456.1	PI0012456.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding