PI0012375 (gene) Melon (PI 482460) v1

Overview
NamePI0012375
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionUnknown protein
Locationchr04: 9395931 .. 9396192 (-)
RNA-Seq ExpressionPI0012375
SyntenyPI0012375
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACGGTGCCTCACCTTCATTCAGCCGCTATCCGGCCGGAGGACGCCATCCTCCGCCGTAATTCTCTGTCTGTGAAATTTTCCTCATCGCCGGTGGCGGAATTGCCTGAATCTCAGAGGGTATTTGGAGTCTTTCCTATCGGTTGCTGTCGGGCCCAATCTACTTGGTGTCAGGGCTCTGTTTGTTTGGGCCTAATTATGGTTGAATGAGCTTCTCGCCAGGCCCAATTCAAGCCCAATTAATGTTTCGGCCCATTAA

mRNA sequence

ATGGCCACGGTGCCTCACCTTCATTCAGCCGCTATCCGGCCGGAGGACGCCATCCTCCGCCGTAATTCTCTGTCTGTGAAATTTTCCTCATCGCCGTCTTTCCTATCGGTTGCTGTCGGGCCCAATCTACTTGGTGTCAGGGCTCTGCCCAATTCAAGCCCAATTAATGTTTCGGCCCATTAA

Coding sequence (CDS)

ATGGCCACGGTGCCTCACCTTCATTCAGCCGCTATCCGGCCGGAGGACGCCATCCTCCGCCGTAATTCTCTGTCTGTGAAATTTTCCTCATCGCCGTCTTTCCTATCGGTTGCTGTCGGGCCCAATCTACTTGGTGTCAGGGCTCTGCCCAATTCAAGCCCAATTAATGTTTCGGCCCATTAA

Protein sequence

MATVPHLHSAAIRPEDAILRRNSLSVKFSSSPSFLSVAVGPNLLGVRALPNSSPINVSAH
Homology
[Close]
BLAST of PI0012375 vs. ExPASy TrEMBL
Match: A0A5A7UEN9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1545G00420 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.9e-10
Identity = 44/61 (72.13%), Postives = 45/61 (73.77%), Query Frame = 0 

Query: 1  MATVPHLHSAAIRPEDAILRRNSLSVKFSSSP------------SFLSVAVGPNLLGVRA 50
          MATV HLHSAAIRPE+AILRRNSLSVKFSSSP            SF SVAVGPNL  VRA
Sbjct: 1  MATVLHLHSAAIRPENAILRRNSLSVKFSSSPVADLPECQRDLESFRSVAVGPNLFDVRA 60

[Close]
BLAST of PI0012375 vs. ExPASy TrEMBL
Match: A0A0A0LFH6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G837020 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.2e-10
Identity = 47/72 (65.28%), Postives = 47/72 (65.28%), Query Frame = 0 

Query: 1  MATVPHLHSAAIRPEDAILRRNSLSVKFSSSP------------SFLSVAVGPNLLGVRA 60
          MATV HLHSA      AIL RNS SVKFSSSP             F  VAVGPNL GVRA
Sbjct: 1  MATVLHLHSA------AILNRNSQSVKFSSSPVAELTECQRDLQFFRWVAVGPNLFGVRA 60

[Close]
BLAST of PI0012375 vs. NCBI nr
Match: KAA0053670.1 (hypothetical protein E6C27_scaffold135G00420 [Cucumis melo var. makuwa] >TYK00839.1 hypothetical protein E5676_scaffold1545G00420 [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 3.9e-10
Identity = 44/61 (72.13%), Postives = 45/61 (73.77%), Query Frame = 0 

Query: 1  MATVPHLHSAAIRPEDAILRRNSLSVKFSSSP------------SFLSVAVGPNLLGVRA 50
          MATV HLHSAAIRPE+AILRRNSLSVKFSSSP            SF SVAVGPNL  VRA
Sbjct: 1  MATVLHLHSAAIRPENAILRRNSLSVKFSSSPVADLPECQRDLESFRSVAVGPNLFDVRA 60

[Close]
BLAST of PI0012375 vs. NCBI nr
Match: KGN59669.1 (hypothetical protein Csa_002539 [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 8.8e-10
Identity = 47/72 (65.28%), Postives = 47/72 (65.28%), Query Frame = 0 

Query: 1  MATVPHLHSAAIRPEDAILRRNSLSVKFSSSP------------SFLSVAVGPNLLGVRA 60
          MATV HLHSA      AIL RNS SVKFSSSP             F  VAVGPNL GVRA
Sbjct: 1  MATVLHLHSA------AILNRNSQSVKFSSSPVAELTECQRDLQFFRWVAVGPNLFGVRA 60

The following BLAST results are available for this feature:
BLAST of PI0012375 vs.
Match NameE-valueIdentityDescription
BLAST of PI0012375 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UEN91.9e-1072.13Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LFH64.2e-1065.28Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G837020 PE=4 SV=1[more]
BLAST of PI0012375 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0053670.13.9e-1072.13hypothetical protein E6C27_scaffold135G00420 [Cucumis melo var. makuwa] >TYK0083... [more]
KGN59669.18.8e-1065.28hypothetical protein Csa_002539 [Cucumis sativus][more]
BLAST of PI0012375 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0012375.1PI0012375.1mRNA