PI0012367 (gene) Melon (PI 482460) v1

Overview


Name	PI0012367
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	LYR motif-containing protein 2
Location	chr04: 29865240 .. 29866146 (-)
RNA-Seq Expression	PI0012367
Synteny	PI0012367

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTACCTCATTTTAGTCCTCCATTGGATTAAAGCCCATTGTTCCTGAGCCCAATAATTCGCTTCGGCCCAACACTGAGTTCTTCAAAGAAGCCCAACAAGAATAGAAGGCCCAGGCCCAAATAGTTTATCAGAGAGAGCCCATTATTTAGGAGTCACTCGCTCAATGCCAGGCTACTCAAGAACCAAATCGGTCTTCCGTCGTTGAATTCTCAAAGAAATCGGAAACCGAAAGACAGAAATGATTGTACCGTCGATTGAATCAAGCATGGAATTCGCTTCACTTTAATCTGCACCATCAGTGTTATCCTCTTCATTTTGATCATTAAGGTAATTTCGAACATTCTCGAAGAAATTTACATTGTGCCCTAGTTTTCATACAAGTCTTCAAAGAATTAGTTCGATAATAAATCGTAATCTGCCTATGATTTCTGCACAGAACTGTTTGAATTTGTGGTTATAAATGATTGGTTTTGGCATAGGAAAGAGAGATCGCGATGGTTTTCTCCCATGATTTACACGAATTTATTCTTCGAGCAAGAGTGTTGAAACTGTATAGACAGGGTTTAAGAACAGCTCGGAAAGCTCCTGTTCATGGTCGAGGTAAAGCTTTGTTTAATGGGATTTTATAATTACTTGTGTTGTGATTATTGAAATTTCATGTAATTGGATTAGATGATGAGAGTGTTTTTGGAACAGATGAATTGAGGCATACGATGAGAGAAGAAATGGAGAAGAACAGAAGGTGTAATGATAGACAGAAAATAAGATTTTTGTTGAGTGAAGGAATAGAGAGATTGAAGCGTTTAGATGAGATGTTGGATATGCAAGGTCATTCTTAGATAGAGACTCGAGAGCTTCTTTTTTCTTTTTCTTTTTTTTTTTTTTTTTTGAATTTTGATTATTAGG

mRNA sequence

AGTACCTCATTTTAGTCCTCCATTGGATTAAAGCCCATTGTTCCTGAGCCCAATAATTCGCTTCGGCCCAACACTGAGTTCTTCAAAGAAGCCCAACAAGAATAGAAGGCCCAGGCCCAAATAGTTTATCAGAGAGAGCCCATTATTTAGGAGTCACTCGCTCAATGCCAGGCTACTCAAGAACCAAATCGGTCTTCCGTCGTTGAATTCTCAAAGAAATCGGAAACCGAAAGACAGAAATGATTGTACCGTCGATTGAATCAAGCATGGAATTCGCTTCACTTTAATCTGCACCATCAGTGTTATCCTCTTCATTTTGATCATTAAGAACTGTTTGAATTTGTGGTTATAAATGATTGGTTTTGGCATAGGAAAGAGAGATCGCGATGGTTTTCTCCCATGATTTACACGAATTTATTCTTCGAGCAAGAGTGTTGAAACTGTATAGACAGGGTTTAAGAACAGCTCGGAAAGCTCCTGTTCATGGTCGAGATGAATTGAGGCATACGATGAGAGAAGAAATGGAGAAGAACAGAAGGTGTAATGATAGACAGAAAATAAGATTTTTGTTGAGTGAAGGAATAGAGAGATTGAAGCGTTTAGATGAGATGTTGGATATGCAAGGTCATTCTTAGATAGAGACTCGAGAGCTTCTTTTTTCTTTTTCTTTTTTTTTTTTTTTTTTGAATTTTGATTATTAGG

Coding sequence (CDS)

ATGGTTTTCTCCCATGATTTACACGAATTTATTCTTCGAGCAAGAGTGTTGAAACTGTATAGACAGGGTTTAAGAACAGCTCGGAAAGCTCCTGTTCATGGTCGAGATGAATTGAGGCATACGATGAGAGAAGAAATGGAGAAGAACAGAAGGTGTAATGATAGACAGAAAATAAGATTTTTGTTGAGTGAAGGAATAGAGAGATTGAAGCGTTTAGATGAGATGTTGGATATGCAAGGTCATTCTTAG

Protein sequence

MVFSHDLHEFILRARVLKLYRQGLRTARKAPVHGRDELRHTMREEMEKNRRCNDRQKIRFLLSEGIERLKRLDEMLDMQGHS

Homology

[Close]

BLAST of PI0012367 vs. ExPASy TrEMBL
Match: A0A5A7V7X8 (LYR motif-containing protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold205G001390 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 8.3e-33
Identity = 76/81 (93.83%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 1  MVFSHDLHEFILRARVLKLYRQGLRTARKAPVHGRDELRHTMREEMEKNRRCNDRQKIRF 60
          MVFSHDL EFILRARVLKLYRQGLRTARKAPV GRDELRH MREEMEKNR+CNDRQKIRF
Sbjct: 1  MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60

Query: 61 LLSEGIERLKRLDEMLDMQGH 82
          LLSEGIERLK+LDEMLDMQGH
Sbjct: 61 LLSEGIERLKQLDEMLDMQGH 81

[Close]

BLAST of PI0012367 vs. ExPASy TrEMBL
Match: A0A1S3CRB8 (LYR motif-containing protein 2 OS=Cucumis melo OX=3656 GN=LOC103503854 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.1e-32
Identity = 75/81 (92.59%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 1  MVFSHDLHEFILRARVLKLYRQGLRTARKAPVHGRDELRHTMREEMEKNRRCNDRQKIRF 60
          MVFSHDL EFILRARVLKLYRQGLR ARKAPV GRDELRH MREEMEKNR+CNDRQKIRF
Sbjct: 1  MVFSHDLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60

Query: 61 LLSEGIERLKRLDEMLDMQGH 82
          LLSEGIERLK+LDEMLDMQGH
Sbjct: 61 LLSEGIERLKQLDEMLDMQGH 81

[Close]

BLAST of PI0012367 vs. ExPASy TrEMBL
Match: A0A5D3E7B8 (LYR motif-containing protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007760 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.1e-32
Identity = 75/81 (92.59%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 1  MVFSHDLHEFILRARVLKLYRQGLRTARKAPVHGRDELRHTMREEMEKNRRCNDRQKIRF 60
          MVFSHDL EFILRARVLKLYRQGLR ARKAPV GRDELRH MREEMEKNR+CNDRQKIRF
Sbjct: 1  MVFSHDLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60

Query: 61 LLSEGIERLKRLDEMLDMQGH 82
          LLSEGIERLK+LDEMLDMQGH
Sbjct: 61 LLSEGIERLKQLDEMLDMQGH 81

[Close]

BLAST of PI0012367 vs. ExPASy TrEMBL
Match: A0A6J1CHJ1 (uncharacterized protein LOC111011218 OS=Momordica charantia OX=3673 GN=LOC111011218 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.2e-28
Identity = 67/82 (81.71%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 1  MVFSHDLHEFILRARVLKLYRQGLRTARKAPVHGRDELRHTMREEMEKNRRCNDRQKIRF 60
          MV S DLHEFILRARVLKL+RQ LRTARKAPVH R+ELRHT+R+EME NR CND+QK+R+
Sbjct: 1  MVVSLDLHEFILRARVLKLFRQALRTARKAPVHAREELRHTIRQEMENNRSCNDKQKVRY 60

Query: 61 LLSEGIERLKRLDEMLDMQGHS 83
          L+SEGIE LKRLDEMLDMQGHS
Sbjct: 61 LISEGIESLKRLDEMLDMQGHS 82

[Close]

BLAST of PI0012367 vs. ExPASy TrEMBL
Match: A0A6J1F8N3 (uncharacterized protein LOC111443321 OS=Cucurbita moschata OX=3662 GN=LOC111443321 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.1e-28
Identity = 68/82 (82.93%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 1  MVFSHDLHEFILRARVLKLYRQGLRTARKAPVHGRDELRHTMREEMEKNRRCNDRQKIRF 60
          MV + DL EFILRARVLKLYRQ LRT RKAPVH R+ELRHT+R+EME NR C+DRQK+RF
Sbjct: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRGCSDRQKVRF 60

Query: 61 LLSEGIERLKRLDEMLDMQGHS 83
          LLSEGIERLKRLDEMLDMQGHS
Sbjct: 61 LLSEGIERLKRLDEMLDMQGHS 82

[Close]

BLAST of PI0012367 vs. NCBI nr
Match: XP_004136367.1 (LYR motif-containing protein 2 [Cucumis sativus] >XP_011652458.1 LYR motif-containing protein 2 [Cucumis sativus] >KAE8651352.1 hypothetical protein Csa_000719 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 5.9e-33
Identity = 77/81 (95.06%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 1  MVFSHDLHEFILRARVLKLYRQGLRTARKAPVHGRDELRHTMREEMEKNRRCNDRQKIRF 60
          MVFSHDL EFILRARVLKLYRQGLRTARKAPV GRDELRH MREEMEKNR+CNDRQKIRF
Sbjct: 1  MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60

Query: 61 LLSEGIERLKRLDEMLDMQGH 82
          LLSEGIERLKRLDEMLDMQGH
Sbjct: 61 LLSEGIERLKRLDEMLDMQGH 81

[Close]

BLAST of PI0012367 vs. NCBI nr
Match: KAA0063314.1 (LYR motif-containing protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 149.1 bits (375), Expect = 1.7e-32
Identity = 76/81 (93.83%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 1  MVFSHDLHEFILRARVLKLYRQGLRTARKAPVHGRDELRHTMREEMEKNRRCNDRQKIRF 60
          MVFSHDL EFILRARVLKLYRQGLRTARKAPV GRDELRH MREEMEKNR+CNDRQKIRF
Sbjct: 1  MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60

Query: 61 LLSEGIERLKRLDEMLDMQGH 82
          LLSEGIERLK+LDEMLDMQGH
Sbjct: 61 LLSEGIERLKQLDEMLDMQGH 81

[Close]

BLAST of PI0012367 vs. NCBI nr
Match: XP_008466455.1 (PREDICTED: LYR motif-containing protein 2 [Cucumis melo] >XP_008466456.1 PREDICTED: LYR motif-containing protein 2 [Cucumis melo] >TYK31461.1 LYR motif-containing protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 146.7 bits (369), Expect = 8.5e-32
Identity = 75/81 (92.59%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 1  MVFSHDLHEFILRARVLKLYRQGLRTARKAPVHGRDELRHTMREEMEKNRRCNDRQKIRF 60
          MVFSHDL EFILRARVLKLYRQGLR ARKAPV GRDELRH MREEMEKNR+CNDRQKIRF
Sbjct: 1  MVFSHDLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60

Query: 61 LLSEGIERLKRLDEMLDMQGH 82
          LLSEGIERLK+LDEMLDMQGH
Sbjct: 61 LLSEGIERLKQLDEMLDMQGH 81

[Close]

BLAST of PI0012367 vs. NCBI nr
Match: XP_022140612.1 (uncharacterized protein LOC111011218 [Momordica charantia] >XP_022140617.1 uncharacterized protein LOC111011218 [Momordica charantia])

HSP 1 Score: 135.2 bits (339), Expect = 2.6e-28
Identity = 67/82 (81.71%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 1  MVFSHDLHEFILRARVLKLYRQGLRTARKAPVHGRDELRHTMREEMEKNRRCNDRQKIRF 60
          MV S DLHEFILRARVLKL+RQ LRTARKAPVH R+ELRHT+R+EME NR CND+QK+R+
Sbjct: 1  MVVSLDLHEFILRARVLKLFRQALRTARKAPVHAREELRHTIRQEMENNRSCNDKQKVRY 60

Query: 61 LLSEGIERLKRLDEMLDMQGHS 83
          L+SEGIE LKRLDEMLDMQGHS
Sbjct: 61 LISEGIESLKRLDEMLDMQGHS 82

[Close]

BLAST of PI0012367 vs. NCBI nr
Match: XP_023535371.1 (uncharacterized protein LOC111796833 [Cucurbita pepo subsp. pepo] >XP_023535372.1 uncharacterized protein LOC111796833 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 134.8 bits (338), Expect = 3.3e-28
Identity = 68/82 (82.93%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 1  MVFSHDLHEFILRARVLKLYRQGLRTARKAPVHGRDELRHTMREEMEKNRRCNDRQKIRF 60
          MV + DL EFILRARVLKLYRQ LRT RKAPVH R+ELRHT+R+EME NR C+DRQK+RF
Sbjct: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRSCSDRQKVRF 60

Query: 61 LLSEGIERLKRLDEMLDMQGHS 83
          LLSEGIERLKRLDEMLDMQGHS
Sbjct: 61 LLSEGIERLKRLDEMLDMQGHS 82

[Close]

BLAST of PI0012367 vs. TAIR 10
Match: AT1G76065.1 (LYR family of Fe/S cluster biogenesis protein )

HSP 1 Score: 113.6 bits (283), Expect = 7.4e-26
Identity = 56/76 (73.68%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 6  DLHEFILRARVLKLYRQGLRTARKAPVHGRDELRHTMREEMEKNRRCNDRQKIRFLLSEG 65
          DL  FILRARVLKLYRQ L+ A +APVH R EL+ T+R+EMEKNR CND+QKIR+L+SEG
Sbjct: 5  DLQSFILRARVLKLYRQALKIAHRAPVHVRGELKQTVRQEMEKNRDCNDKQKIRYLISEG 64

Query: 66 IERLKRLDEMLDMQGH 82
          +ER+K LDEMLDMQGH
Sbjct: 65 LERIKGLDEMLDMQGH 80

The following BLAST results are available for this feature:

BLAST of PI0012367 vs.


Match Name	E-value	Identity	Description

BLAST of PI0012367 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V7X8	8.3e-33	93.83	LYR motif-containing protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S3CRB8	4.1e-32	92.59	LYR motif-containing protein 2 OS=Cucumis melo OX=3656 GN=LOC103503854 PE=4 SV=1	[more]
A0A5D3E7B8	4.1e-32	92.59	LYR motif-containing protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A6J1CHJ1	1.2e-28	81.71	uncharacterized protein LOC111011218 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A6J1F8N3	2.1e-28	82.93	uncharacterized protein LOC111443321 OS=Cucurbita moschata OX=3662 GN=LOC1114433...	[more]

BLAST of PI0012367 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136367.1	5.9e-33	95.06	LYR motif-containing protein 2 [Cucumis sativus] >XP_011652458.1 LYR motif-conta...	[more]
KAA0063314.1	1.7e-32	93.83	LYR motif-containing protein 2 [Cucumis melo var. makuwa]	[more]
XP_008466455.1	8.5e-32	92.59	PREDICTED: LYR motif-containing protein 2 [Cucumis melo] >XP_008466456.1 PREDICT...	[more]
XP_022140612.1	2.6e-28	81.71	uncharacterized protein LOC111011218 [Momordica charantia] >XP_022140617.1 uncha...	[more]
XP_023535371.1	3.3e-28	82.93	uncharacterized protein LOC111796833 [Cucurbita pepo subsp. pepo] >XP_023535372....	[more]

BLAST of PI0012367 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G76065.1	7.4e-26	73.68	LYR family of Fe/S cluster biogenesis protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 35..55
None	No IPR available	PANTHER	PTHR13675	LYR MOTIF-CONTAINING PROTEIN 2	coord: 3..81
None	No IPR available	PANTHER	PTHR13675:SF0	LYR MOTIF-CONTAINING PROTEIN 2	coord: 3..81
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 15..70 e-value: 3.0E-15 score: 56.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0012367.1	PI0012367.1	mRNA