PI0012338 (gene) Melon (PI 482460) v1

Overview
NamePI0012338
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionPhloem filament protein
Locationchr01: 8863613 .. 8864221 (-)
RNA-Seq ExpressionPI0012338
SyntenyPI0012338
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTGCGAGTCAAAGAATGAGTGGATCCAAATCTCTGATGTAACAACACCTTGTGTGATTGATTTTGCAAAACATGCTGTGGATGACCACAACAAAGCAAAAGGAGATAACCTTGTATTCAAAAAGGTTATAATCGGATGGTATTTGGAGATAGATTATGATAAAACAAAGATTCGTCTTATTATTGAAGCAACAAACAGTAAGGGAGAAGTAATAATATTTGAAGGAGTGATTGTGGTAGATGAAAAAGATGGACAAAAAGCGAAGACATCCATTTCATTCGTTCCTGGGTATATAGATGTGAAGAATCCATTGTTATTTTGGATTAAAATTCATAATGTTAACGAGCCTCATGTGCAAGAAATTGCAAAGTTTGCAGTGGATAAGCATAACAAGGATACTAATGACAGTCTTGTATACATTTGCACCACTGAAGGCTGGTATTATGTGTCTAATCCAATTGTTACAGTATTTAAACTTCATCTTAAGGCCAAGGATTGCTTGGGACGTGTGCGGGAGTACGAAGCTTTGGTTCGAGAAGAGAAACCGCCTACTGGGAAAATTCTGATACTTGAATATTTCAAAGTTATACCAAAGATATGTTGA

mRNA sequence

ATGAGTTGCGAGTCAAAGAATGAGTGGATCCAAATCTCTGATGTAACAACACCTTGTGTGATTGATTTTGCAAAACATGCTGTGGATGACCACAACAAAGCAAAAGGAGATAACCTTGTATTCAAAAAGGTTATAATCGGATGGTATTTGGAGATAGATTATGATAAAACAAAGATTCGTCTTATTATTGAAGCAACAAACAGTAAGGGAGAAGTAATAATATTTGAAGGAGTGATTGTGGTAGATGAAAAAGATGGACAAAAAGCGAAGACATCCATTTCATTCGTTCCTGGGTATATAGATGCCAAGGATTGCTTGGGACGTGTGCGGGAGTACGAAGCTTTGGTTCGAGAAGAGAAACCGCCTACTGGGAAAATTCTGATACTTGAATATTTCAAAGTTATACCAAAGATATGTTGA

Coding sequence (CDS)

ATGAGTTGCGAGTCAAAGAATGAGTGGATCCAAATCTCTGATGTAACAACACCTTGTGTGATTGATTTTGCAAAACATGCTGTGGATGACCACAACAAAGCAAAAGGAGATAACCTTGTATTCAAAAAGGTTATAATCGGATGGTATTTGGAGATAGATTATGATAAAACAAAGATTCGTCTTATTATTGAAGCAACAAACAGTAAGGGAGAAGTAATAATATTTGAAGGAGTGATTGTGGTAGATGAAAAAGATGGACAAAAAGCGAAGACATCCATTTCATTCGTTCCTGGGTATATAGATGCCAAGGATTGCTTGGGACGTGTGCGGGAGTACGAAGCTTTGGTTCGAGAAGAGAAACCGCCTACTGGGAAAATTCTGATACTTGAATATTTCAAAGTTATACCAAAGATATGTTGA

Protein sequence

MSCESKNEWIQISDVTTPCVIDFAKHAVDDHNKAKGDNLVFKKVIIGWYLEIDYDKTKIRLIIEATNSKGEVIIFEGVIVVDEKDGQKAKTSISFVPGYIDAKDCLGRVREYEALVREEKPPTGKILILEYFKVIPKIC
Homology
BLAST of PI0012338 vs. ExPASy TrEMBL
Match: A0A0A0K7B3 (Phloem filament protein OS=Cucumis sativus OX=3659 GN=Csa_7G222870 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 5.1e-51
Identity = 107/141 (75.89%), Postives = 117/141 (82.98%), Query Frame = 0

Query: 1   MSCESKNE-WIQISDVTTPCVIDFAKHAVDDHNKAKGDNLVFKKVIIGWYLEIDYDKTKI 60
           MS +SKN+ WIQI D  TPCVID  K+AVDD+NKA  DNLVFKKVIIGWYLEIDYDKTK+
Sbjct: 1   MSSDSKNDKWIQIPDTKTPCVIDLGKYAVDDYNKAHKDNLVFKKVIIGWYLEIDYDKTKL 60

Query: 61  RLIIEATNSKGEVIIFEGVIVVDEKDGQKAKTSISFVPGYID-AKDCLGRVREYEALVRE 120
           RLIIE  NSKGEVII+E VIVVD+KDG+K KT ISF+PGYID AKDCLGRVR+YEALV E
Sbjct: 61  RLIIEVVNSKGEVIIYEVVIVVDDKDGKKVKTPISFIPGYIDEAKDCLGRVRDYEALVEE 120

Query: 121 EKPPTGKILILEYFKVIPKIC 140
           EK     IL L YFKVIPK C
Sbjct: 121 EKKLPNAILKLIYFKVIPKKC 141

BLAST of PI0012338 vs. ExPASy TrEMBL
Match: A0A1S3BHQ3 (uncharacterized protein LOC103489701 OS=Cucumis melo OX=3656 GN=LOC103489701 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 6.5e-46
Identity = 110/204 (53.92%), Postives = 120/204 (58.82%), Query Frame = 0

Query: 1   MSCESKNE-WIQISDVTTPCVIDFAKHAVDDHNKAKGDNLVFKKVIIGWYLEIDYDKTKI 60
           MSCE+K E WIQI D TTPCVI+F KHAVDDHNK KGDNLVFKKVIIGWYLEIDY+KTK+
Sbjct: 1   MSCETKKEQWIQIHDTTTPCVINFGKHAVDDHNKEKGDNLVFKKVIIGWYLEIDYNKTKL 60

Query: 61  RLIIEATNSKGEVIIFEGVIVVDEKDGQKAKTSISFVPGYID------------------ 120
           RLIIE  NSKGEVI FE VIVVD+KDG+  KT ISFVPG+ID                  
Sbjct: 61  RLIIEVVNSKGEVITFEVVIVVDDKDGKTVKTVISFVPGHIDEKNPWTFWIKIHNVTEPH 120

Query: 121 ----------------------------------------------AKDCLGRVREYEAL 140
                                                         AKDCLGRVREYEAL
Sbjct: 121 VQEIAKFAVEEHNKITHDNLIYICIIEGWYHVSTIPPVTLWKLHLKAKDCLGRVREYEAL 180

BLAST of PI0012338 vs. ExPASy TrEMBL
Match: A0A5A7TFI4 (Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G001740 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 3.2e-45
Identity = 111/205 (54.15%), Postives = 121/205 (59.02%), Query Frame = 0

Query: 1   MSCESKNE-WIQISDVTTPCVIDFAKHAVDDHNKAKGDNLVFKKVIIGWYLEIDYDKTKI 60
           MSCE+K E WIQI D TTPCVI+F KHAVDDHNK KGDNLVFKKVIIGWYLEIDY+KTK+
Sbjct: 1   MSCETKKEQWIQIHDTTTPCVINFGKHAVDDHNKEKGDNLVFKKVIIGWYLEIDYNKTKL 60

Query: 61  RLIIEATNSKGEVIIFEGVIVVDEKDGQKAKTSISFVPGYID------------------ 120
           RLIIE  NSKGEVI FE VIVVD+KDG+  KT ISFVPG+ID                  
Sbjct: 61  RLIIEVVNSKGEVITFEVVIVVDDKDGKTVKTVISFVPGHIDEKNPWTFWIKIHNVTEPH 120

Query: 121 ----------------------------------------------AKDCLGRVREYEAL 140
                                                         AKDCLGRVREYEAL
Sbjct: 121 VQEIAKFAVEEHNKITHDNLIYICIIEGWYHVPTIPLVTLWKLHLKAKDCLGRVREYEAL 180

BLAST of PI0012338 vs. ExPASy TrEMBL
Match: A0A0A0K3W6 (Phloem filament protein OS=Cucumis sativus OX=3659 GN=Csa_7G222880 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.5e-29
Identity = 80/198 (40.40%), Postives = 104/198 (52.53%), Query Frame = 0

Query: 1   MSCESKNEWIQISDVTTPCVIDFAKHAVDDHNKAKGDNLVFKKVIIGWYLEIDYDKTKIR 60
           MSC+SK  WI+I D TTPCV + AK  V+ HNKA GD+LV+K+VI+GW+ EID    K R
Sbjct: 1   MSCDSKKTWIKIPDCTTPCVNEVAKDGVNQHNKASGDSLVYKRVIVGWFWEIDDHAIKHR 60

Query: 61  LIIEATNSKGEVIIFEGVIVVDEKDGQKAKTSISFVPGYID------------------- 120
           LIIE   SKG V+I+E +IVV +KDG++ +T ISF+PGY+D                   
Sbjct: 61  LIIEVVTSKGVVLIYELIIVVVQKDGKRVRTLISFLPGYLDEKNPLIFWIKIPDVKKSCV 120

Query: 121 --------------------------------------------AKDCLGRVREYEALVR 136
                                                       AK+C+GRVR+Y A+V+
Sbjct: 121 QDCAKWAVTEHNKITHDYLAYDSTVEGWYHEVNPFVIIFKLHIKAKECIGRVRDYIAVVK 180

BLAST of PI0012338 vs. ExPASy TrEMBL
Match: A0A5D3D2J2 (Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G001660 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 4.7e-28
Identity = 83/203 (40.89%), Postives = 102/203 (50.25%), Query Frame = 0

Query: 1   MSCESKNEWIQISDVTTPCVIDFAKHAVDDHNKAKGDNLVFKKVIIGWYLEIDYDKTKIR 60
           MSC SK EWI+I D  TPCVI+ AK AV+ HNKA GDNLVFK+VIIGW+LEID    K R
Sbjct: 1   MSCGSKKEWIKIPDCNTPCVIEVAKDAVNQHNKASGDNLVFKRVIIGWFLEIDDHTIKHR 60

Query: 61  LIIEATNSKGEVIIFEGVIVVDEKDGQKAKTSISFVPGY--------------------- 120
           L IE  NSKG V+I   VIVV  KDG++ +T +S   GY                     
Sbjct: 61  LYIEVINSKGVVLIISIVIVVVTKDGKRVRTLVSSHHGYPDEKDLFIFWNKIPDVNQPCV 120

Query: 121 --------------------------------------------IDAKDCLGRVREYEAL 138
                                                       I AK+C+GRVR+Y A+
Sbjct: 121 QNVAKWAVNKHNTDTHDHLVYVSTVEGWYIEAADHSGTLVYKLHIKAKECIGRVRDYCAV 180

BLAST of PI0012338 vs. NCBI nr
Match: XP_008447193.1 (PREDICTED: uncharacterized protein LOC103489701 [Cucumis melo])

HSP 1 Score: 193.4 bits (490), Expect = 1.3e-45
Identity = 110/204 (53.92%), Postives = 120/204 (58.82%), Query Frame = 0

Query: 1   MSCESKNE-WIQISDVTTPCVIDFAKHAVDDHNKAKGDNLVFKKVIIGWYLEIDYDKTKI 60
           MSCE+K E WIQI D TTPCVI+F KHAVDDHNK KGDNLVFKKVIIGWYLEIDY+KTK+
Sbjct: 1   MSCETKKEQWIQIHDTTTPCVINFGKHAVDDHNKEKGDNLVFKKVIIGWYLEIDYNKTKL 60

Query: 61  RLIIEATNSKGEVIIFEGVIVVDEKDGQKAKTSISFVPGYID------------------ 120
           RLIIE  NSKGEVI FE VIVVD+KDG+  KT ISFVPG+ID                  
Sbjct: 61  RLIIEVVNSKGEVITFEVVIVVDDKDGKTVKTVISFVPGHIDEKNPWTFWIKIHNVTEPH 120

Query: 121 ----------------------------------------------AKDCLGRVREYEAL 140
                                                         AKDCLGRVREYEAL
Sbjct: 121 VQEIAKFAVEEHNKITHDNLIYICIIEGWYHVSTIPPVTLWKLHLKAKDCLGRVREYEAL 180

BLAST of PI0012338 vs. NCBI nr
Match: KAA0041963.1 (Phloem filament protein [Cucumis melo var. makuwa] >TYK17898.1 Phloem filament protein [Cucumis melo var. makuwa])

HSP 1 Score: 191.0 bits (484), Expect = 6.7e-45
Identity = 111/205 (54.15%), Postives = 121/205 (59.02%), Query Frame = 0

Query: 1   MSCESKNE-WIQISDVTTPCVIDFAKHAVDDHNKAKGDNLVFKKVIIGWYLEIDYDKTKI 60
           MSCE+K E WIQI D TTPCVI+F KHAVDDHNK KGDNLVFKKVIIGWYLEIDY+KTK+
Sbjct: 1   MSCETKKEQWIQIHDTTTPCVINFGKHAVDDHNKEKGDNLVFKKVIIGWYLEIDYNKTKL 60

Query: 61  RLIIEATNSKGEVIIFEGVIVVDEKDGQKAKTSISFVPGYID------------------ 120
           RLIIE  NSKGEVI FE VIVVD+KDG+  KT ISFVPG+ID                  
Sbjct: 61  RLIIEVVNSKGEVITFEVVIVVDDKDGKTVKTVISFVPGHIDEKNPWTFWIKIHNVTEPH 120

Query: 121 ----------------------------------------------AKDCLGRVREYEAL 140
                                                         AKDCLGRVREYEAL
Sbjct: 121 VQEIAKFAVEEHNKITHDNLIYICIIEGWYHVPTIPLVTLWKLHLKAKDCLGRVREYEAL 180

BLAST of PI0012338 vs. NCBI nr
Match: XP_031745077.1 (multicystatin [Cucumis sativus])

HSP 1 Score: 186.4 bits (472), Expect = 1.6e-43
Identity = 107/203 (52.71%), Postives = 117/203 (57.64%), Query Frame = 0

Query: 1   MSCESKNE-WIQISDVTTPCVIDFAKHAVDDHNKAKGDNLVFKKVIIGWYLEIDYDKTKI 60
           MS +SKN+ WIQI D  TPCVID  K+AVDD+NKA  DNLVFKKVIIGWYLEIDYDKTK+
Sbjct: 1   MSSDSKNDKWIQIPDTKTPCVIDLGKYAVDDYNKAHKDNLVFKKVIIGWYLEIDYDKTKL 60

Query: 61  RLIIEATNSKGEVIIFEGVIVVDEKDGQKAKTSISFVPGYID------------------ 120
           RLIIE  NSKGEVII+E VIVVD+KDG+K KT ISF+PGYID                  
Sbjct: 61  RLIIEVVNSKGEVIIYEVVIVVDDKDGKKVKTPISFIPGYIDEVDPWLFWFRIIDINDPH 120

Query: 121 ---------------------------------------------AKDCLGRVREYEALV 140
                                                        AKDCLGRVR+YEALV
Sbjct: 121 VQQIAKFAVEKHNQDNNDSLVYISTIVCWYRLLSPILKQYKVYLKAKDCLGRVRDYEALV 180

BLAST of PI0012338 vs. NCBI nr
Match: KAE8646075.1 (hypothetical protein Csa_016329 [Cucumis sativus])

HSP 1 Score: 176.8 bits (447), Expect = 1.3e-40
Identity = 102/197 (51.78%), Postives = 112/197 (56.85%), Query Frame = 0

Query: 1   MSCESKNE-WIQISDVTTPCVIDFAKHAVDDHNKAKGDNLVFKKVIIGWYLEIDYDKTKI 60
           MS +SKN+ WIQI D  TPCVID  K+AVDD+NKA  DNLVFKKVIIGWYLEIDYDKTK+
Sbjct: 1   MSSDSKNDKWIQIPDTKTPCVIDLGKYAVDDYNKAHKDNLVFKKVIIGWYLEIDYDKTKL 60

Query: 61  RLIIEATNSKGEVIIFEGVIVVDEKDGQKAKTSISFVPGYID------------------ 120
           RLIIE  NSKGEVII+E VIVVD+KDG+K KT ISF+PGYID                  
Sbjct: 61  RLIIEVVNSKGEVIIYEVVIVVDDKDGKKVKTPISFIPGYIDEVDPWLFWFRIIDINDPH 120

Query: 121 ---------------------------------------------AKDCLGRVREYEALV 134
                                                        AKDCLGRVR+YEALV
Sbjct: 121 VQQIAKFAVEKHNQDNNDSLVYISTIVCWYRLLSPILKQYKVYLKAKDCLGRVRDYEALV 180

BLAST of PI0012338 vs. NCBI nr
Match: KAA0041955.1 (Phloem filament protein [Cucumis melo var. makuwa] >TYK17890.1 Phloem filament protein [Cucumis melo var. makuwa])

HSP 1 Score: 134.0 bits (336), Expect = 9.7e-28
Identity = 83/203 (40.89%), Postives = 102/203 (50.25%), Query Frame = 0

Query: 1   MSCESKNEWIQISDVTTPCVIDFAKHAVDDHNKAKGDNLVFKKVIIGWYLEIDYDKTKIR 60
           MSC SK EWI+I D  TPCVI+ AK AV+ HNKA GDNLVFK+VIIGW+LEID    K R
Sbjct: 1   MSCGSKKEWIKIPDCNTPCVIEVAKDAVNQHNKASGDNLVFKRVIIGWFLEIDDHTIKHR 60

Query: 61  LIIEATNSKGEVIIFEGVIVVDEKDGQKAKTSISFVPGY--------------------- 120
           L IE  NSKG V+I   VIVV  KDG++ +T +S   GY                     
Sbjct: 61  LYIEVINSKGVVLIISIVIVVVTKDGKRVRTLVSSHHGYPDEKDLFIFWNKIPDVNQPCV 120

Query: 121 --------------------------------------------IDAKDCLGRVREYEAL 138
                                                       I AK+C+GRVR+Y A+
Sbjct: 121 QNVAKWAVNKHNTDTHDHLVYVSTVEGWYIEAADHSGTLVYKLHIKAKECIGRVRDYCAV 180

BLAST of PI0012338 vs. TAIR 10
Match: AT4G16500.1 (Cystatin/monellin superfamily protein )

HSP 1 Score: 43.5 bits (101), Expect = 1.6e-04
Identity = 25/69 (36.23%), Postives = 40/69 (57.97%), Query Frame = 0

Query: 12  ISDVTTPCVIDFAKHAVDDHNKAKGDNLVFKKVIIGWYLEIDYDKTKIRLIIEATNSKGE 71
           I +V+ P V+  AK+A+++HNK   + LVF KV+ G    +    TK  L I A +  G+
Sbjct: 35  IKNVSDPDVVAVAKYAIEEHNKESKEKLVFVKVVEGTTQVV--SGTKYDLKIAAKDGGGK 94

Query: 72  VIIFEGVIV 81
           +  +E V+V
Sbjct: 95  IKNYEAVVV 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K7B35.1e-5175.89Phloem filament protein OS=Cucumis sativus OX=3659 GN=Csa_7G222870 PE=4 SV=1[more]
A0A1S3BHQ36.5e-4653.92uncharacterized protein LOC103489701 OS=Cucumis melo OX=3656 GN=LOC103489701 PE=... [more]
A0A5A7TFI43.2e-4554.15Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0K3W61.5e-2940.40Phloem filament protein OS=Cucumis sativus OX=3659 GN=Csa_7G222880 PE=4 SV=1[more]
A0A5D3D2J24.7e-2840.89Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
XP_008447193.11.3e-4553.92PREDICTED: uncharacterized protein LOC103489701 [Cucumis melo][more]
KAA0041963.16.7e-4554.15Phloem filament protein [Cucumis melo var. makuwa] >TYK17898.1 Phloem filament p... [more]
XP_031745077.11.6e-4352.71multicystatin [Cucumis sativus][more]
KAE8646075.11.3e-4051.78hypothetical protein Csa_016329 [Cucumis sativus][more]
KAA0041955.19.7e-2840.89Phloem filament protein [Cucumis melo var. makuwa] >TYK17890.1 Phloem filament p... [more]
Match NameE-valueIdentityDescription
AT4G16500.11.6e-0436.23Cystatin/monellin superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009994Phloem filament PP1PFAMPF07430PP1coord: 19..94
e-value: 3.6E-10
score: 39.8
coord: 100..132
e-value: 1.1E-5
score: 25.4
NoneNo IPR availableGENE3D3.10.450.10coord: 4..97
e-value: 2.3E-10
score: 42.5
NoneNo IPR availablePANTHERPTHR47116:SF5PHLOEM FILAMENT PROTEINcoord: 2..137
NoneNo IPR availableSUPERFAMILY54403Cystatin/monellincoord: 8..87
IPR027214CystatinPANTHERPTHR47116PHLOEM FILAMENT PROTEINcoord: 2..137

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0012338.1PI0012338.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0004869 cysteine-type endopeptidase inhibitor activity