PI0012253 (gene) Melon (PI 482460) v1

Overview


Name	PI0012253
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	zinc_ribbon_15 domain-containing protein
Location	chr03: 14089582 .. 14089917 (+)
RNA-Seq Expression	PI0012253
Synteny	PI0012253

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTTCTTCTTCGTCGGAGGTTTAGAGCAACAAGTTCGCCAACTCCTCAAATCCGGCGCCGCCCGTTGTATAAACTGCAACTCCCCGGCCGATCTCGTCGACTATGAGAAAGTCCTAAAGCTTTTCTTTGTTCCGGTGTGGCGGTGGCCGGGAAAAGAGCCATTGATGCACTGCAACAACTGTAAGCTCTTTTTCCCTCAGTCGTTATCTCCGCCGTCATTTTCCGATCAATCGCCATCAGCCGCTCTTTTAAGAGCCCTTCGTTGCCGTTCTTGCAACAAAGTGGTGGAGCCCGACTTCAGTTTCTGCCCTTACTGTGGATCTTCTCTGTAA

mRNA sequence

ATGTTCTTCTTCTTCGTCGGAGGTTTAGAGCAACAAGTTCGCCAACTCCTCAAATCCGGCGCCGCCCGTTGTATAAACTGCAACTCCCCGGCCGATCTCGTCGACTATGAGAAAGTCCTAAAGCTTTTCTTTGTTCCGGTGTGGCGGTGGCCGGGAAAAGAGCCATTGATGCACTGCAACAACTGTAAGCTCTTTTTCCCTCAGTCGTTATCTCCGCCGTCATTTTCCGATCAATCGCCATCAGCCGCTCTTTTAAGAGCCCTTCGTTGCCGTTCTTGCAACAAAGTGGTGGAGCCCGACTTCAGTTTCTGCCCTTACTGTGGATCTTCTCTGTAA

Coding sequence (CDS)

ATGTTCTTCTTCTTCGTCGGAGGTTTAGAGCAACAAGTTCGCCAACTCCTCAAATCCGGCGCCGCCCGTTGTATAAACTGCAACTCCCCGGCCGATCTCGTCGACTATGAGAAAGTCCTAAAGCTTTTCTTTGTTCCGGTGTGGCGGTGGCCGGGAAAAGAGCCATTGATGCACTGCAACAACTGTAAGCTCTTTTTCCCTCAGTCGTTATCTCCGCCGTCATTTTCCGATCAATCGCCATCAGCCGCTCTTTTAAGAGCCCTTCGTTGCCGTTCTTGCAACAAAGTGGTGGAGCCCGACTTCAGTTTCTGCCCTTACTGTGGATCTTCTCTGTAA

Protein sequence

MFFFFVGGLEQQVRQLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCNNCKLFFPQSLSPPSFSDQSPSAALLRALRCRSCNKVVEPDFSFCPYCGSSL

Homology

[Close]

BLAST of PI0012253 vs. ExPASy TrEMBL
Match: A0A5A7V2D0 (zinc_ribbon_15 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G001160 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.8e-59
Identity = 108/111 (97.30%), Postives = 110/111 (99.10%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVRQLLKSGAARCINC+SPADLV+YEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQLLKSGAARCINCDSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPQSLSPPSFSDQSPSAALLRALRCRSCNKVVEPDFSFCPYCGSSL 112
           NCKLFFPQSLSPPSFSDQSPSAAL RALRCRSCNKVVEPDFSFCPYCGSSL
Sbjct: 61  NCKLFFPQSLSPPSFSDQSPSAALSRALRCRSCNKVVEPDFSFCPYCGSSL 111

[Close]

BLAST of PI0012253 vs. ExPASy TrEMBL
Match: A0A0A0KDD6 (zinc_ribbon_15 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G385100 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.8e-59
Identity = 108/111 (97.30%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVR+LLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPQSLSPPSFSDQSPSAALLRALRCRSCNKVVEPDFSFCPYCGSSL 112
           NCKLFFPQSLSPPSFSDQS SA LLRALRCRSCNKVVEPDFSFCPYCGSSL
Sbjct: 61  NCKLFFPQSLSPPSFSDQSTSATLLRALRCRSCNKVVEPDFSFCPYCGSSL 111

[Close]

BLAST of PI0012253 vs. ExPASy TrEMBL
Match: A0A1S3CRV3 (uncharacterized protein LOC103504060 OS=Cucumis melo OX=3656 GN=LOC103504060 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.8e-59
Identity = 108/111 (97.30%), Postives = 110/111 (99.10%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVRQLLKSGAARCINC+SPADLV+YEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQLLKSGAARCINCDSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPQSLSPPSFSDQSPSAALLRALRCRSCNKVVEPDFSFCPYCGSSL 112
           NCKLFFPQSLSPPSFSDQSPSAAL RALRCRSCNKVVEPDFSFCPYCGSSL
Sbjct: 61  NCKLFFPQSLSPPSFSDQSPSAALSRALRCRSCNKVVEPDFSFCPYCGSSL 111

[Close]

BLAST of PI0012253 vs. ExPASy TrEMBL
Match: A0A6J1HEV4 (uncharacterized protein LOC111462885 OS=Cucurbita moschata OX=3662 GN=LOC111462885 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.0e-54
Identity = 100/112 (89.29%), Postives = 104/112 (92.86%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVR LLK+GA RCI+CNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPQSLSPPSFSDQ-SPSAALLRALRCRSCNKVVEPDFSFCPYCGSSL 112
           NCKLFFP+S SPP  SDQ  PSAALLRALRC SCNKVVEPDFSFCP+CGSSL
Sbjct: 61  NCKLFFPRSFSPPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSL 112

[Close]

BLAST of PI0012253 vs. ExPASy TrEMBL
Match: A0A6J1JRI4 (uncharacterized protein LOC111489157 OS=Cucurbita maxima OX=3661 GN=LOC111489157 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.7e-52
Identity = 98/112 (87.50%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVRQLLKS A RCINCNSPADLV+YEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQLLKSAAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPQSLSPPSFSDQS-PSAALLRALRCRSCNKVVEPDFSFCPYCGSSL 112
           NC LFFP+S SPP  SDQS P AAL R LRCRSCNKVVEPDFSFCP+CG SL
Sbjct: 61  NCNLFFPRSFSPPPISDQSTPPAALSRTLRCRSCNKVVEPDFSFCPFCGFSL 112

[Close]

BLAST of PI0012253 vs. NCBI nr
Match: XP_008466714.1 (PREDICTED: uncharacterized protein LOC103504060 [Cucumis melo] >KAA0059901.1 uncharacterized protein E6C27_scaffold108G001990 [Cucumis melo var. makuwa] >TYK24851.1 uncharacterized protein E5676_scaffold184G001160 [Cucumis melo var. makuwa])

HSP 1 Score: 238.0 bits (606), Expect = 3.8e-59
Identity = 108/111 (97.30%), Postives = 110/111 (99.10%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVRQLLKSGAARCINC+SPADLV+YEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQLLKSGAARCINCDSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPQSLSPPSFSDQSPSAALLRALRCRSCNKVVEPDFSFCPYCGSSL 112
           NCKLFFPQSLSPPSFSDQSPSAAL RALRCRSCNKVVEPDFSFCPYCGSSL
Sbjct: 61  NCKLFFPQSLSPPSFSDQSPSAALSRALRCRSCNKVVEPDFSFCPYCGSSL 111

[Close]

BLAST of PI0012253 vs. NCBI nr
Match: XP_011657434.1 (uncharacterized protein LOC105435859 [Cucumis sativus])

HSP 1 Score: 238.0 bits (606), Expect = 3.8e-59
Identity = 108/111 (97.30%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVR+LLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPQSLSPPSFSDQSPSAALLRALRCRSCNKVVEPDFSFCPYCGSSL 112
           NCKLFFPQSLSPPSFSDQS SA LLRALRCRSCNKVVEPDFSFCPYCGSSL
Sbjct: 61  NCKLFFPQSLSPPSFSDQSTSATLLRALRCRSCNKVVEPDFSFCPYCGSSL 111

[Close]

BLAST of PI0012253 vs. NCBI nr
Match: XP_038884584.1 (uncharacterized protein LOC120075351 [Benincasa hispida])

HSP 1 Score: 224.2 bits (570), Expect = 5.7e-55
Identity = 101/112 (90.18%), Postives = 105/112 (93.75%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGL+QQVRQ++KS A RCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLQQQVRQIIKSSAGRCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPQSLSPPSFSDQS-PSAALLRALRCRSCNKVVEPDFSFCPYCGSSL 112
           NCKLFFPQS SPP  SDQS PSAALLRAL CRSCN+VVEPDFSFCPYCGSSL
Sbjct: 61  NCKLFFPQSFSPPPISDQSLPSAALLRALHCRSCNRVVEPDFSFCPYCGSSL 112

[Close]

BLAST of PI0012253 vs. NCBI nr
Match: XP_022962458.1 (uncharacterized protein LOC111462885 [Cucurbita moschata])

HSP 1 Score: 220.3 bits (560), Expect = 8.2e-54
Identity = 100/112 (89.29%), Postives = 104/112 (92.86%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVR LLK+GA RCI+CNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPQSLSPPSFSDQ-SPSAALLRALRCRSCNKVVEPDFSFCPYCGSSL 112
           NCKLFFP+S SPP  SDQ  PSAALLRALRC SCNKVVEPDFSFCP+CGSSL
Sbjct: 61  NCKLFFPRSFSPPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSL 112

[Close]

BLAST of PI0012253 vs. NCBI nr
Match: KAE8647272.1 (hypothetical protein Csa_018307 [Cucumis sativus])

HSP 1 Score: 219.9 bits (559), Expect = 1.1e-53
Identity = 99/102 (97.06%), Postives = 100/102 (98.04%), Query Frame = 0


Query: 10  EQQVRQLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCNNCKLFFPQS 69
           EQQVR+LLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCNNCKLFFPQS
Sbjct: 77  EQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCNNCKLFFPQS 136

Query: 70  LSPPSFSDQSPSAALLRALRCRSCNKVVEPDFSFCPYCGSSL 112
           LSPPSFSDQS SA LLRALRCRSCNKVVEPDFSFCPYCGSSL
Sbjct: 137 LSPPSFSDQSTSATLLRALRCRSCNKVVEPDFSFCPYCGSSL 178

[Close]

BLAST of PI0012253 vs. TAIR 10
Match: AT1G44414.1 (unknown protein; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 168.7 bits (426), Expect = 2.6e-42
Identity = 75/111 (67.57%), Postives = 86/111 (77.48%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGL QQVRQ+LKSGA  CI C S ADLV+Y+KV+KLFFVPVWRWPGK+PL+HC 
Sbjct: 1   MFFFFVGGLGQQVRQVLKSGAGTCIRCGSQADLVEYDKVIKLFFVPVWRWPGKDPLLHCR 60

Query: 61  NCKLFFPQSLSPPSFSDQSPSAALLRALRCRSCNKVVEPDFSFCPYCGSSL 112
           +C LFFPQSLSPP  S             CR C++VVEP+F FCP+CGSSL
Sbjct: 61  DCDLFFPQSLSPPPVS----------LATCRFCDRVVEPEFRFCPFCGSSL 101

The following BLAST results are available for this feature:

BLAST of PI0012253 vs.


Match Name	E-value	Identity	Description

BLAST of PI0012253 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V2D0	1.8e-59	97.30	zinc_ribbon_15 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A0A0KDD6	1.8e-59	97.30	zinc_ribbon_15 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G385...	[more]
A0A1S3CRV3	1.8e-59	97.30	uncharacterized protein LOC103504060 OS=Cucumis melo OX=3656 GN=LOC103504060 PE=...	[more]
A0A6J1HEV4	4.0e-54	89.29	uncharacterized protein LOC111462885 OS=Cucurbita moschata OX=3662 GN=LOC1114628...	[more]
A0A6J1JRI4	1.7e-52	87.50	uncharacterized protein LOC111489157 OS=Cucurbita maxima OX=3661 GN=LOC111489157...	[more]

BLAST of PI0012253 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008466714.1	3.8e-59	97.30	PREDICTED: uncharacterized protein LOC103504060 [Cucumis melo] >KAA0059901.1 unc...	[more]
XP_011657434.1	3.8e-59	97.30	uncharacterized protein LOC105435859 [Cucumis sativus]	[more]
XP_038884584.1	5.7e-55	90.18	uncharacterized protein LOC120075351 [Benincasa hispida]	[more]
XP_022962458.1	8.2e-54	89.29	uncharacterized protein LOC111462885 [Cucurbita moschata]	[more]
KAE8647272.1	1.1e-53	97.06	hypothetical protein Csa_018307 [Cucumis sativus]	[more]

BLAST of PI0012253 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G44414.1	2.6e-42	67.57	unknown protein; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR031493	Zinc-ribbon 15	PFAM	PF17032	zinc_ribbon_15	coord: 23..108 e-value: 4.1E-23 score: 82.0
None	No IPR available	PANTHER	PTHR36718	OS05G0435400 PROTEIN	coord: 1..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0012253.1	PI0012253.1	mRNA