PI0012082 (gene) Melon (PI 482460) v1

Overview
NamePI0012082
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr07: 15076914 .. 15077144 (-)
RNA-Seq ExpressionPI0012082
SyntenyPI0012082
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCAGAGGCACAATCAGTAAATTCAAGAGGTAGAAGAAATGTGGTGGAGGAGTTATATGATCGTGTGGTGCAACGACTGATATATGGTTTATCTAGGGAACCAGAGAAGAAGTATGAAATAGAACAACTTAAGGAGTTAGGTGCTAAGGAATTTATAGGAACGGGGGAACCTGAACAACCGGAGAAATGGTTGCGGACGTTGGAGAAATGCTTTCGAGTAATGTAG

mRNA sequence

ATGGATTCAGAGGCACAATCAGTAAATTCAAGAGGTAGAAGAAATGTGGTGGAGGAGTTATATGATCGTGTGGTGCAACGACTGATATATGGTTTATCTAGGGAACCAGAGAAGAAGTATGAAATAGAACAACTTAAGGAGTTAGGTGCTAAGGAATTTATAGGAACGGGGGAACCTGAACAACCGGAGAAATGGTTGCGGACGTTGGAGAAATGCTTTCGAGTAATGTAG

Coding sequence (CDS)

ATGGATTCAGAGGCACAATCAGTAAATTCAAGAGGTAGAAGAAATGTGGTGGAGGAGTTATATGATCGTGTGGTGCAACGACTGATATATGGTTTATCTAGGGAACCAGAGAAGAAGTATGAAATAGAACAACTTAAGGAGTTAGGTGCTAAGGAATTTATAGGAACGGGGGAACCTGAACAACCGGAGAAATGGTTGCGGACGTTGGAGAAATGCTTTCGAGTAATGTAG

Protein sequence

MDSEAQSVNSRGRRNVVEELYDRVVQRLIYGLSREPEKKYEIEQLKELGAKEFIGTGEPEQPEKWLRTLEKCFRVM
Homology
BLAST of PI0012082 vs. ExPASy TrEMBL
Match: A0A5D3CDA4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G001250 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 7.2e-15
Identity = 44/73 (60.27%), Postives = 55/73 (75.34%), Query Frame = 0

Query: 1  MDSEAQSVNSRGRRNVVEELYDRVVQRLIYGLSREPEKKYEIEQLKELGAKEFIGTGEPE 60
          MD EA S+N   RR+  E LYDRV QRLI  L+++PEKK++IE+LK LGA +F GT  P+
Sbjct: 18 MDLEAHSLNPNARRDQKEALYDRVAQRLIDVLTQQPEKKFQIEKLKALGATKFNGTTNPD 77

Query: 61 QPEKWLRTLEKCF 74
          + EKW RTLEKCF
Sbjct: 78 EAEKWSRTLEKCF 90

BLAST of PI0012082 vs. ExPASy TrEMBL
Match: A0A0A0L7X2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G426910 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.1e-14
Identity = 43/74 (58.11%), Postives = 55/74 (74.32%), Query Frame = 0

Query: 1  MDSEAQSVNSRGRRNVVEELYDRVVQRLIYGLSREPEKKYEIEQLKELGAKEFIGTGEPE 60
          M+SEA SVN    +   E +YDRV QRL+  ++ +PEKK+ IE+LK LGA EF GT +PE
Sbjct: 1  MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPE 60

Query: 61 QPEKWLRTLEKCFR 75
          + EKW+RTLEKCFR
Sbjct: 61 EFEKWIRTLEKCFR 74

BLAST of PI0012082 vs. ExPASy TrEMBL
Match: A0A0A0LI31 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G163160 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 8.9e-13
Identity = 41/76 (53.95%), Postives = 53/76 (69.74%), Query Frame = 0

Query: 1  MDSEAQSVNSRGRRNVVEELYDRVVQRLIYGLSREPEKKYEIEQLKELGAKEFIGTGEPE 60
          +DSEA ++N   RR   E LYDR  QRLI  L+++ +K + IE++K LGA EF G    E
Sbjct: 5  IDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGIENHE 64

Query: 61 QPEKWLRTLEKCFRVM 77
          + EKW+RTLEKCFRVM
Sbjct: 65 EAEKWIRTLEKCFRVM 80

BLAST of PI0012082 vs. ExPASy TrEMBL
Match: A0A5D3DES5 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold991G00660 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.4e-10
Identity = 38/77 (49.35%), Postives = 49/77 (63.64%), Query Frame = 0

Query: 2   DSEAQSVNSRGRRNVVEELYDRVVQRLIYGL---SREPEKKYEIEQLKELGAKEFIGTGE 61
           +S+A+S       N+ E+L DR+ QRLI G+     +PEKKY IE+LK LGA  F+GT  
Sbjct: 46  ESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTN 105

Query: 62  PEQPEKWLRTLEKCFRV 76
           P   E WL  +EKCFRV
Sbjct: 106 PADAEAWLTLIEKCFRV 122

BLAST of PI0012082 vs. ExPASy TrEMBL
Match: A0A5D3BB91 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001760 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.4e-10
Identity = 38/77 (49.35%), Postives = 48/77 (62.34%), Query Frame = 0

Query: 2   DSEAQSVNSRGRRNVVEELYDRVVQRLIYGL---SREPEKKYEIEQLKELGAKEFIGTGE 61
           +S+A+S   R   NV E+L DR+ QRL+ G+     +PEKKY  E+LK LGA  F GT  
Sbjct: 27  ESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSAQSDPEKKYGFERLKALGATTFAGTTN 86

Query: 62  PEQPEKWLRTLEKCFRV 76
           P   E WL  +EKCFRV
Sbjct: 87  PTDVEAWLTLIEKCFRV 103

BLAST of PI0012082 vs. NCBI nr
Match: KAA0037861.1 (hypothetical protein E6C27_scaffold36G00200 [Cucumis melo var. makuwa] >TYK09821.1 hypothetical protein E5676_scaffold127G001250 [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 1.5e-14
Identity = 44/73 (60.27%), Postives = 55/73 (75.34%), Query Frame = 0

Query: 1  MDSEAQSVNSRGRRNVVEELYDRVVQRLIYGLSREPEKKYEIEQLKELGAKEFIGTGEPE 60
          MD EA S+N   RR+  E LYDRV QRLI  L+++PEKK++IE+LK LGA +F GT  P+
Sbjct: 18 MDLEAHSLNPNARRDQKEALYDRVAQRLIDVLTQQPEKKFQIEKLKALGATKFNGTTNPD 77

Query: 61 QPEKWLRTLEKCF 74
          + EKW RTLEKCF
Sbjct: 78 EAEKWSRTLEKCF 90

BLAST of PI0012082 vs. NCBI nr
Match: KGN58005.1 (hypothetical protein Csa_009787 [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 4.4e-14
Identity = 43/74 (58.11%), Postives = 55/74 (74.32%), Query Frame = 0

Query: 1  MDSEAQSVNSRGRRNVVEELYDRVVQRLIYGLSREPEKKYEIEQLKELGAKEFIGTGEPE 60
          M+SEA SVN    +   E +YDRV QRL+  ++ +PEKK+ IE+LK LGA EF GT +PE
Sbjct: 1  MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPE 60

Query: 61 QPEKWLRTLEKCFR 75
          + EKW+RTLEKCFR
Sbjct: 61 EFEKWIRTLEKCFR 74

BLAST of PI0012082 vs. NCBI nr
Match: KGN61535.1 (hypothetical protein Csa_006696 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 1.8e-12
Identity = 41/76 (53.95%), Postives = 53/76 (69.74%), Query Frame = 0

Query: 1  MDSEAQSVNSRGRRNVVEELYDRVVQRLIYGLSREPEKKYEIEQLKELGAKEFIGTGEPE 60
          +DSEA ++N   RR   E LYDR  QRLI  L+++ +K + IE++K LGA EF G    E
Sbjct: 5  IDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGIENHE 64

Query: 61 QPEKWLRTLEKCFRVM 77
          + EKW+RTLEKCFRVM
Sbjct: 65 EAEKWIRTLEKCFRVM 80

BLAST of PI0012082 vs. NCBI nr
Match: KAA0036813.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-09
Identity = 38/77 (49.35%), Postives = 48/77 (62.34%), Query Frame = 0

Query: 2   DSEAQSVNSRGRRNVVEELYDRVVQRLIYGL---SREPEKKYEIEQLKELGAKEFIGTGE 61
           +S+A+S   R   NV E+L DR+ QRL+ G+     +PEKKY  E+LK LGA  F GT  
Sbjct: 27  ESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSAQSDPEKKYGFERLKALGATTFAGTTN 86

Query: 62  PEQPEKWLRTLEKCFRV 76
           P   E WL  +EKCFRV
Sbjct: 87  PTDVEAWLTLIEKCFRV 103

BLAST of PI0012082 vs. NCBI nr
Match: TYJ95881.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-09
Identity = 38/77 (49.35%), Postives = 48/77 (62.34%), Query Frame = 0

Query: 2   DSEAQSVNSRGRRNVVEELYDRVVQRLIYGL---SREPEKKYEIEQLKELGAKEFIGTGE 61
           +S+A+S   R   NV E+L DR+ QRL+ G+     +PEKKY  E+LK LGA  F GT  
Sbjct: 27  ESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSAQSDPEKKYGFERLKALGATTFAGTTN 86

Query: 62  PEQPEKWLRTLEKCFRV 76
           P   E WL  +EKCFRV
Sbjct: 87  PTDVEAWLTLIEKCFRV 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CDA47.2e-1560.27Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0L7X22.1e-1458.11Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G426910 PE=4 SV=1[more]
A0A0A0LI318.9e-1353.95Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G163160 PE=4 SV=1[more]
A0A5D3DES55.4e-1049.35DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5D3BB915.4e-1049.35Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11... [more]
Match NameE-valueIdentityDescription
KAA0037861.11.5e-1460.27hypothetical protein E6C27_scaffold36G00200 [Cucumis melo var. makuwa] >TYK09821... [more]
KGN58005.14.4e-1458.11hypothetical protein Csa_009787 [Cucumis sativus][more]
KGN61535.11.8e-1253.95hypothetical protein Csa_006696 [Cucumis sativus][more]
KAA0036813.11.1e-0949.35DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
TYJ95881.11.1e-0949.35retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0012082.1PI0012082.1mRNA