PI0012029 (gene) Melon (PI 482460) v1

Overview


Name	PI0012029
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr02: 5766205 .. 5766466 (-)
RNA-Seq Expression	PI0012029
Synteny	PI0012029

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTTTAAGCCCAAATGTAAATCTTCACGACACCTAAAGAGAACTTCGAGTAAAAGAGAAGGGCTCAGGCGTAAAAGAGAATCGCGCAAATAACTTACATTATTCTGCTTCAAACTGAACAAAATTTTTTCCAGTAGAAAGGAATCCGAAGGAGAGAGCGAAGAAGTGACAGGATCGTAAAGAGGAGGTCCTGGAGTAGAATGGATTTGGAGGAATCGAAGGGCAGTATTTGAAGGCGAGTAGATACTTTGAAGTCTAA

mRNA sequence

ATGAATTTTAAGCCCAAATGTAAATCTTCACGACACCTAAAGAGAACTTCGAGTAAAAGAGAAGGGCTCAGGCGTAAAAGAGAATCGCTAGAAAGGAATCCGAAGGAGAGAAATGGATTTGGAGGAATCGAAGGGCAGTATTTGAAGGCGAGTAGATACTTTGAAGTCTAA

Coding sequence (CDS)

ATGAATTTTAAGCCCAAATGTAAATCTTCACGACACCTAAAGAGAACTTCGAGTAAAAGAGAAGGGCTCAGGCGTAAAAGAGAATCGCTAGAAAGGAATCCGAAGGAGAGAAATGGATTTGGAGGAATCGAAGGGCAGTATTTGAAGGCGAGTAGATACTTTGAAGTCTAA

Protein sequence

MNFKPKCKSSRHLKRTSSKREGLRRKRESLERNPKERNGFGGIEGQYLKASRYFEV

Homology

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BLAST of PI0012029 vs. ExPASy TrEMBL
Match: A0A0A0LXH4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G627450 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.5e-14
Identity = 49/64 (76.56%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 1  MNFKPKCKSSRHLKRTSSKREGLRRKRESLERNPKER------------NGFGGIEGQYL 53
          MNFKPKCKS RHLKRT SKREGLRRKRESLERNPKER            NGFGGIEGQYL
Sbjct: 1  MNFKPKCKSPRHLKRTWSKREGLRRKRESLERNPKERVKKRQDEEVLEQNGFGGIEGQYL 60

The following BLAST results are available for this feature:

BLAST of PI0012029 vs.


Match Name	E-value	Identity	Description

BLAST of PI0012029 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXH4	4.5e-14	76.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G627450 PE=4 SV=1	[more]

BLAST of PI0012029 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

BLAST of PI0012029 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 13..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0012029.1	PI0012029.1	mRNA