PI0011844 (gene) Melon (PI 482460) v1

Overview


Name	PI0011844
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Photosystem I assembly protein ycf3
Location	chr01: 13071976 .. 13073939 (-)
RNA-Seq Expression	PI0011844
Synteny	PI0011844

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAAATTTTTAAAATATGGGACAACAAAAGAATTAACTGTTGAGCCGTATGAGGTAGGAAACTCTCAAGTATGGTTCTAAGGGAAGGAATTTACCTACCTATTCCGATCGGGGAGAACAGGCCATTCGACAGGGAGATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCCGCTGAGTATTGGAAACAAGCTATAACGCTTACTTCCGGTAATTATATTATCTTAGAAATTGAACTCTATGATGTGTGGGGAATTGATTTTATAGGACCATTTCCTCAATCCGGCGGTCATATCTACATCTTGTTGGCTATGGACTATGTCTCCAAATGGGTTGAAGCCATCTCTTGCGCGAATAATGATGCAATTACAGTATGCAAGTTCTTGAAGAGAAACATTTTCACGCGATTTGGGACGCCTAAAGCCCTTATCAGTGAGGAGGGATCTCACTTTATCAATCACATCATTGCCAAACTGCTCGTAAAATTGCAAATTGGACAAAAGGCATTACTCTTCAATTCACGTCTACGACTGTTTCCGGGTAAACTTCGTTCATGATGGTCAGGGCTATTCTTGGTCAAACAAGTCTTCTCGCATGGTGTTGTGGAGATTACATCGTTGGATGAAACAAATGTGTTCAAGGTAAACGACCAAAGACTCAAGGCATATTTTGAAGACGATGAACGCGTAAAGTCTTTTGTGGAATTAATGTAAATTGCCTTTATTTAAATTACCTTGGACACATCAATGTTTTATTGTATTGCATGAACATATTTTATTACAAACACATTGCTTTTGTGCATCTTTATCTCGCTTATTTCTAATTTTTTATTTTACCGCTTTCTTTACAGCTTTCTTTGCCGCTTTTTAGAGTAGTAATTTTGTGCCTTTGAGGATAGGTGAAGAGAAGCACATCCTAGGTTTACAATGCAAATAATTAGTACATGACAATTTTAATGGGAAATTGCAAATTCAGAAATCAAAGCGTTGCATTTAATGTGACTGTCGCATCCTGACTTCGAAGTGATGTGCAGTTTGGTGTCAGTTCTCATTAATTGCTCTCAAAGCGTAATGATGATCTATGCCGACAATATCACACATAGATACCCAACCACCATCTTCAGAAAAATCATTTGTGTTTTAGATTTCTAGGATTCTTCCAGAAACCTCTCCTTTTTCTCGTCGCGAAACTAATTGCAAAACTCATCCGTCTCTAGAAAACTCATCGGAAAACTCATAGAAGAAATGGCAAGTTCATCCATCCCGTAAAACACGATACACACAAGTATGTTCTGACGAACCTAAGATGAAACAAGCTCAACCACGCGGAAGAGATGAACAAGTTGCGCCCATTTACACTGTCTTGAAACATGGTAAAGGGAAGGTGTTGCTAGAGCCCATGTCGGAGCCTAAACAGTTAGCTGACGAGTTGGAAGTGGACATGGATGATAGGAGCACGGTGCTTGCATTCCTTGTTGAATGAAAAAGAAAAAGAGAAGCAGAAGAAAAAGAGGGAAAGACGACAGAAGAACGCCAAAAAAAAGAAAAAGAGCAAGAGCTGAAAAAATTCGAGGAACGCTGGAAGGTGGAGGGCAAACATTTGGAAATACGCTCCCCACCCGACGAAGTCGCCTTGATCCATAAGAAAATCAAGGAGAAACTTTCAAGGTCTCCTTTGACAAGACGAAGGAGACAATGGCGGTGCTGAAAATCGTCATTCAAAAGAAGGAAAACGAGAAAAAGATGTTCGCCCAATTGGACAAGCAGATTGCGAAGCTCCCAATAAAGTGTAGGGCGTTGGAAGGAGAAAGATGACCTCGAAGCCTTAGTGGAGGAGTTCAAGGAAGAGCTGGAGGCGATGAGTCCAATTGATCAAGGGATATCACCTAAGAAACAAAAGGAGGTCATCGGGCCATCTAAGACAAGGAAGAAAACGGGGACGTCCAGACCTGAGAAGCCCTAA

mRNA sequence

ATGGTAAAATTTTTAAAATATGGGACAACAAAAGAATTAACTGTTGAGCCGTATGAGGAAACTCTCAAGTATGGTTCTAAGGGAAGGAATTTACCTACCTATTCCGATCGGGGAGAACAGGCCATTCGACAGGGAGATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCCGCTGAGTATTGGAAACAAGCTATAACGCTTACTTCCGGGCGTTGGAAGGAGAAAGATGACCTCGAAGCCTTAGTGGAGGAGTTCAAGGAAGAGCTGGAGGCGATGAGTCCAATTGATCAAGGGATATCACCTAAGAAACAAAAGGAGGTCATCGGGCCATCTAAGACAAGGAAGAAAACGGGGACGTCCAGACCTGAGAAGCCCTAA

Coding sequence (CDS)

ATGGTAAAATTTTTAAAATATGGGACAACAAAAGAATTAACTGTTGAGCCGTATGAGGAAACTCTCAAGTATGGTTCTAAGGGAAGGAATTTACCTACCTATTCCGATCGGGGAGAACAGGCCATTCGACAGGGAGATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCCGCTGAGTATTGGAAACAAGCTATAACGCTTACTTCCGGGCGTTGGAAGGAGAAAGATGACCTCGAAGCCTTAGTGGAGGAGTTCAAGGAAGAGCTGGAGGCGATGAGTCCAATTGATCAAGGGATATCACCTAAGAAACAAAAGGAGGTCATCGGGCCATCTAAGACAAGGAAGAAAACGGGGACGTCCAGACCTGAGAAGCCCTAA

Protein sequence

MVKFLKYGTTKELTVEPYEETLKYGSKGRNLPTYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRWKEKDDLEALVEEFKEELEAMSPIDQGISPKKQKEVIGPSKTRKKTGTSRPEKP

Homology

[Close]

BLAST of PI0011844 vs. ExPASy Swiss-Prot
Match: Q4VZH4 (Photosystem I assembly protein Ycf3 OS=Cucumis sativus OX=3659 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 7.0e-12
Identity = 35/50 (70.00%), Postives = 38/50 (76.00%), Query Frame = 0


Query: 37  RGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRWKEKDDLEALVEEFK 87
           RGEQAIRQGDSEIAEAWFNQAAEYWKQAI LT G + E  +   +   FK
Sbjct: 120 RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 169

[Close]

BLAST of PI0011844 vs. ExPASy Swiss-Prot
Match: Q09MH7 (Photosystem I assembly protein Ycf3 OS=Citrus sinensis OX=2711 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.5e-11
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 37  RGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRW 73
           RGEQA+RQGDSEIAEAWFNQAAEYWKQAI LT G +
Sbjct: 119 RGEQAVRQGDSEIAEAWFNQAAEYWKQAIALTPGNY 154

[Close]

BLAST of PI0011844 vs. ExPASy Swiss-Prot
Match: Q9M3M5 (Photosystem I assembly protein Ycf3 OS=Spinacia oleracea OX=3562 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.5e-11
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 37  RGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRWKE 75
           RGEQAIRQGDSEIAEAWF+QAAEYWKQA+TLT G + E
Sbjct: 116 RGEQAIRQGDSEIAEAWFDQAAEYWKQALTLTPGNYIE 153

[Close]

BLAST of PI0011844 vs. ExPASy Swiss-Prot
Match: A0A336 (Photosystem I assembly protein Ycf3 OS=Coffea arabica OX=13443 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.7e-11
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 37  RGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRWKE 75
           RGEQAIRQGDSEIAEAWF+QAAEYWKQAI+LT G + E
Sbjct: 119 RGEQAIRQGDSEIAEAWFDQAAEYWKQAISLTPGNYIE 156

[Close]

BLAST of PI0011844 vs. ExPASy Swiss-Prot
Match: Q49KZ7 (Photosystem I assembly protein Ycf3 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.7e-11
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 0


Query: 37  RGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRWKEKDDLEALVEEFK 87
           RGEQAIRQGDSEIAEAWF+QAAEYWKQAI LT G + E  +   +   F+
Sbjct: 119 RGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNWLKITRRFE 168

[Close]

BLAST of PI0011844 vs. ExPASy TrEMBL
Match: A0A445C631 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A07g032141 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.2e-17
Identity = 48/56 (85.71%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 19 EETLKYGSKGRNLPTYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRWKE 75
          +ETLKYGSKGRNL TYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQAI LT G + E
Sbjct: 3  QETLKYGSKGRNLLTYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIE 58

[Close]

BLAST of PI0011844 vs. ExPASy TrEMBL
Match: A0A445BUX7 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A08g038983 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.2e-17
Identity = 48/56 (85.71%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 19 EETLKYGSKGRNLPTYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRWKE 75
          +ETLKYGSKGRNL TYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQAI LT G + E
Sbjct: 3  QETLKYGSKGRNLLTYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIE 58

[Close]

BLAST of PI0011844 vs. ExPASy TrEMBL
Match: A0A7N2N7U5 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.2e-17
Identity = 48/67 (71.64%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 20  ETLKYGSKGRNLPTYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRWKEKDDLE 79
           ETLKYGSKGRN P YSDRGEQAIRQG+SEIAEAWF+QAAEYWKQAITLT G + E  +  
Sbjct: 77  ETLKYGSKGRNFPAYSDRGEQAIRQGNSEIAEAWFDQAAEYWKQAITLTPGNYIEAQNWL 136

Query: 80  ALVEEFK 87
            +   F+
Sbjct: 137 KITRRFE 143

[Close]

BLAST of PI0011844 vs. ExPASy TrEMBL
Match: A0A445BIP7 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A09g043603 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.0e-17
Identity = 48/55 (87.27%), Postives = 50/55 (90.91%), Query Frame = 0


Query: 20 ETLKYGSKGRNLPTYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRWKE 75
          ETLKYGSKGRNL TYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQAI LT G + E
Sbjct: 8  ETLKYGSKGRNLLTYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIE 62

[Close]

BLAST of PI0011844 vs. ExPASy TrEMBL
Match: A0A445EUW8 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Arachis hypogaea OX=3818 GN=Ahy_A01g004097 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.6e-17
Identity = 50/65 (76.92%), Postives = 55/65 (84.62%), Query Frame = 0


Query: 19 EETLKYGSKGRNLPTYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRW-----K 78
          +ETLKYGSKGRNL TYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQAI LT G +     K
Sbjct: 3  QETLKYGSKGRNLLTYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGLFVCVVRK 62

[Close]

BLAST of PI0011844 vs. NCBI nr
Match: KAE8652973.1 (hypothetical protein Csa_021105 [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 1.6e-18
Identity = 49/52 (94.23%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 19 EETLKYGSKGRNLPTYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSG 71
          EETLKYGSKGRNLP YSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAI LT G
Sbjct: 3  EETLKYGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPG 54

[Close]

BLAST of PI0011844 vs. NCBI nr
Match: QHO42382.1 (Photosystem I assembly protein [Arachis hypogaea] >QHO48658.1 Photosystem I assembly protein [Arachis hypogaea] >RYR46405.1 hypothetical protein Ahy_A07g032141 [Arachis hypogaea])

HSP 1 Score: 99.4 bits (246), Expect = 2.4e-17
Identity = 48/56 (85.71%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 19 EETLKYGSKGRNLPTYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRWKE 75
          +ETLKYGSKGRNL TYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQAI LT G + E
Sbjct: 3  QETLKYGSKGRNLLTYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIE 58

[Close]

BLAST of PI0011844 vs. NCBI nr
Match: RYR42514.1 (hypothetical protein Ahy_A08g038983 [Arachis hypogaea])

HSP 1 Score: 99.4 bits (246), Expect = 2.4e-17
Identity = 48/56 (85.71%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 19 EETLKYGSKGRNLPTYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRWKE 75
          +ETLKYGSKGRNL TYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQAI LT G + E
Sbjct: 3  QETLKYGSKGRNLLTYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIE 58

[Close]

BLAST of PI0011844 vs. NCBI nr
Match: RYR38553.1 (hypothetical protein Ahy_A09g043603 [Arachis hypogaea])

HSP 1 Score: 98.6 bits (244), Expect = 4.1e-17
Identity = 48/55 (87.27%), Postives = 50/55 (90.91%), Query Frame = 0


Query: 20 ETLKYGSKGRNLPTYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRWKE 75
          ETLKYGSKGRNL TYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQAI LT G + E
Sbjct: 8  ETLKYGSKGRNLLTYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIE 62

[Close]

BLAST of PI0011844 vs. NCBI nr
Match: RYR79265.1 (hypothetical protein Ahy_A01g004097 [Arachis hypogaea])

HSP 1 Score: 98.2 bits (243), Expect = 5.3e-17
Identity = 50/65 (76.92%), Postives = 55/65 (84.62%), Query Frame = 0


Query: 19 EETLKYGSKGRNLPTYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRW-----K 78
          +ETLKYGSKGRNL TYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQAI LT G +     K
Sbjct: 3  QETLKYGSKGRNLLTYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGLFVCVVRK 62

[Close]

BLAST of PI0011844 vs. TAIR 10
Match: ATCG00360.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 66.6 bits (161), Expect = 1.6e-11
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 0


Query: 37  RGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRWKEKDDLEALVEEFK 87
           RGEQAI+QGDSE+AEAWF QAAEYWKQAITLT G + E  +   +   F+
Sbjct: 77  RGEQAIQQGDSEMAEAWFAQAAEYWKQAITLTPGNYIEAQNWLTITRRFE 126

The following BLAST results are available for this feature:

BLAST of PI0011844 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZH4	7.0e-12	70.00	Photosystem I assembly protein Ycf3 OS=Cucumis sativus OX=3659 GN=ycf3 PE=3 SV=1	[more]
Q09MH7	4.5e-11	86.11	Photosystem I assembly protein Ycf3 OS=Citrus sinensis OX=2711 GN=ycf3 PE=3 SV=1	[more]
Q9M3M5	4.5e-11	84.21	Photosystem I assembly protein Ycf3 OS=Spinacia oleracea OX=3562 GN=ycf3 PE=3 SV...	[more]
A0A336	7.7e-11	84.21	Photosystem I assembly protein Ycf3 OS=Coffea arabica OX=13443 GN=ycf3 PE=3 SV=1	[more]
Q49KZ7	7.7e-11	66.00	Photosystem I assembly protein Ycf3 OS=Eucalyptus globulus subsp. globulus OX=71...	[more]

BLAST of PI0011844 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A445C631	1.2e-17	85.71	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A07g032141 PE=4 SV=1	[more]
A0A445BUX7	1.2e-17	85.71	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A08g038983 PE=4 SV=1	[more]
A0A7N2N7U5	1.2e-17	71.64	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A445BIP7	2.0e-17	87.27	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A09g043603 PE=4 SV=1	[more]
A0A445EUW8	2.6e-17	76.92	Photosystem I P700 chlorophyll a apoprotein A1 OS=Arachis hypogaea OX=3818 GN=Ah...	[more]

BLAST of PI0011844 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652973.1	1.6e-18	94.23	hypothetical protein Csa_021105 [Cucumis sativus]	[more]
QHO42382.1	2.4e-17	85.71	Photosystem I assembly protein [Arachis hypogaea] >QHO48658.1 Photosystem I asse...	[more]
RYR42514.1	2.4e-17	85.71	hypothetical protein Ahy_A08g038983 [Arachis hypogaea]	[more]
RYR38553.1	4.1e-17	87.27	hypothetical protein Ahy_A09g043603 [Arachis hypogaea]	[more]
RYR79265.1	5.3e-17	76.92	hypothetical protein Ahy_A01g004097 [Arachis hypogaea]	[more]

BLAST of PI0011844 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00360.1	1.6e-11	64.00	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0011844.1	PI0011844.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome