PI0011801 (gene) Melon (PI 482460) v1

Overview
NamePI0011801
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionUnknown protein
Locationchr04: 4634486 .. 4634767 (+)
RNA-Seq ExpressionPI0011801
SyntenyPI0011801
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGGTGGAGATGGGATTTGGTGGCTTAGAAGTAATTAGAACCGTTAGATTGAATTGACAGAGATGGCAAAGTTTGGCGCTTACGCTGCTTTTGGATCTTCCTTGCGTCTCTACGTTGGCACCAGGTCGGCCTTTCCTCTACGCTTGATCTTATTCTTAAACATTCTCATCAACGGCTCTCATTTCGCCACGTATCTTGTTTTTACAGCTTTGATCTTGACGTCGAATCATGAACGTCCATATTCCCGTTTACTTCCCCCACATGAGGTTCTCGCATAA

mRNA sequence

ATGGACGGTGGAGATGGGATTTGGTGGCTTAGAAAGATGGCAAAGTTTGGCGCTTACGCTGCTTTTGGATCTTCCTTGCGTCTCTACGTTGGCACCAGGTCGGCCTTTCCTCTACGCTTGATCTTATTCTTAAACATTCTCATCAACGGCTCTCATTTCGCCACGTATCTTGTTTTTACAGCTTTGATCTTGACGTCGAATCATGAACGTCCATATTCCCGTTTACTTCCCCCACATGAGGTTCTCGCATAA

Coding sequence (CDS)

ATGGACGGTGGAGATGGGATTTGGTGGCTTAGAAAGATGGCAAAGTTTGGCGCTTACGCTGCTTTTGGATCTTCCTTGCGTCTCTACGTTGGCACCAGGTCGGCCTTTCCTCTACGCTTGATCTTATTCTTAAACATTCTCATCAACGGCTCTCATTTCGCCACGTATCTTGTTTTTACAGCTTTGATCTTGACGTCGAATCATGAACGTCCATATTCCCGTTTACTTCCCCCACATGAGGTTCTCGCATAA

Protein sequence

MDGGDGIWWLRKMAKFGAYAAFGSSLRLYVGTRSAFPLRLILFLNILINGSHFATYLVFTALILTSNHERPYSRLLPPHEVLA
Homology
[Close]
BLAST of PI0011801 vs. ExPASy TrEMBL
Match: A0A0A0LB76 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G746600 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.8e-30
Identity = 76/93 (81.72%), Postives = 78/93 (83.87%), Query Frame = 0 

Query: 1  MDGGDGIWWLR----------KMAKFGAYAAFGSSLRLYVGTRSAFPLRLILFLNILING 60
          MDG DGIWWLR          +MAKFGAYAAFGSSLRLYVGTRSAFPLRLILFLNILING
Sbjct: 1  MDGVDGIWWLRSNYARQIELTEMAKFGAYAAFGSSLRLYVGTRSAFPLRLILFLNILING 60

Query: 61 SHFATYLVFTALILTSNHERPYSRLLPPHEVLA 84
          SH +T  VFTALILTSNHERPYSRLL PHEVLA
Sbjct: 61 SHSSTCPVFTALILTSNHERPYSRLLSPHEVLA 93

[Close]
BLAST of PI0011801 vs. ExPASy TrEMBL
Match: A0A5A7TRW0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G003190 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.1e-06
Identity = 30/42 (71.43%), Postives = 32/42 (76.19%), Query Frame = 0 

Query: 1  MDGGDGIWWLR----------KMAKFGAYAAFGSSLRLYVGT 33
          M+GGDGIWWLR          +MAKFGAYAAFGSSLRLYVGT
Sbjct: 4  MEGGDGIWWLRNNYDRWIELTEMAKFGAYAAFGSSLRLYVGT 45

[Close]
BLAST of PI0011801 vs. NCBI nr
Match: KGN59218.2 (hypothetical protein Csa_001496, partial [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 8.9e-29
Identity = 73/90 (81.11%), Postives = 75/90 (83.33%), Query Frame = 0 

Query: 1  MDGGDGIWWLR----------KMAKFGAYAAFGSSLRLYVGTRSAFPLRLILFLNILING 60
          MDG DGIWWLR          +MAKFGAYAAFGSSLRLYVGTRSAFPLRLILFLNILING
Sbjct: 1  MDGVDGIWWLRSNYARQIELTEMAKFGAYAAFGSSLRLYVGTRSAFPLRLILFLNILING 60

Query: 61 SHFATYLVFTALILTSNHERPYSRLLPPHE 81
          SH +T  VFTALILTSNHERPYSRLL PHE
Sbjct: 61 SHSSTCPVFTALILTSNHERPYSRLLSPHE 90

[Close]
BLAST of PI0011801 vs. NCBI nr
Match: KAA0043949.1 (hypothetical protein E6C27_scaffold236G002920 [Cucumis melo var. makuwa] >TYK25192.1 hypothetical protein E5676_scaffold352G003190 [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-05
Identity = 30/42 (71.43%), Postives = 32/42 (76.19%), Query Frame = 0 

Query: 1  MDGGDGIWWLR----------KMAKFGAYAAFGSSLRLYVGT 33
          M+GGDGIWWLR          +MAKFGAYAAFGSSLRLYVGT
Sbjct: 4  MEGGDGIWWLRNNYDRWIELTEMAKFGAYAAFGSSLRLYVGT 45

The following BLAST results are available for this feature:
BLAST of PI0011801 vs.
Match NameE-valueIdentityDescription
BLAST of PI0011801 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LB761.8e-3081.72Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G746600 PE=4 SV=1[more]
A0A5A7TRW05.1e-0671.43Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of PI0011801 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN59218.28.9e-2981.11hypothetical protein Csa_001496, partial [Cucumis sativus][more]
KAA0043949.11.1e-0571.43hypothetical protein E6C27_scaffold236G002920 [Cucumis melo var. makuwa] >TYK251... [more]
BLAST of PI0011801 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0011801.1PI0011801.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
molecular_function GO:0005524 ATP binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0003724 RNA helicase activity