PI0011488 (gene) Melon (PI 482460) v1

Overview


Name	PI0011488
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr11: 14207719 .. 14207934 (-)
RNA-Seq Expression	PI0011488
Synteny	PI0011488

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGTGTGCACGGAGACATTCGTCGATGTGGGGTCGAATGTGCTTGAATGGTATGAGAGATTTCCCGATGACGATGGAAACGATATGGAGATCCCTATGATGTATAGTCAGGGAGTAGACATGTCGCCTAACGACATCATGGGCACACGACCCAGTCGCTTGAGTGAGGGTAGGACTGGTTCAAACGGATCGAAGAGGAAATGGGGAGGCTAG

mRNA sequence

ATGGGAGTGTGCACGGAGACATTCGTCGATGTGGGGTCGAATGTGCTTGAATGGTATGAGAGATTTCCCGATGACGATGGAAACGATATGGAGATCCCTATGATGTATAGTCAGGGAGTAGACATGTCGCCTAACGACATCATGGGCACACGACCCAGTCGCTTGAGTGAGGGTAGGACTGGTTCAAACGGATCGAAGAGGAAATGGGGAGGCTAG

Coding sequence (CDS)

ATGGGAGTGTGCACGGAGACATTCGTCGATGTGGGGTCGAATGTGCTTGAATGGTATGAGAGATTTCCCGATGACGATGGAAACGATATGGAGATCCCTATGATGTATAGTCAGGGAGTAGACATGTCGCCTAACGACATCATGGGCACACGACCCAGTCGCTTGAGTGAGGGTAGGACTGGTTCAAACGGATCGAAGAGGAAATGGGGAGGCTAG

Protein sequence

MGVCTETFVDVGSNVLEWYERFPDDDGNDMEIPMMYSQGVDMSPNDIMGTRPSRLSEGRTGSNGSKRKWGG

Homology

[Close]

BLAST of PI0011488 vs. ExPASy TrEMBL
Match: A0A5A7V469 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00340 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.7e-19
Identity = 51/68 (75.00%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 4  CTETFVDVGSNVLEWYERFPDDDGNDMEIPMMYSQGVDMSPNDIMGTRPSRLSEGRTGSN 63
          C ETF DVGSN  E YE F  DDGNDMEIPMMYSQG+DM  +DIMGTRP R +EGRTGS+
Sbjct: 4  CVETFTDVGSNFPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSS 63

Query: 64 GSKRKWGG 72
          GSKRK GG
Sbjct: 64 GSKRKQGG 71

[Close]

BLAST of PI0011488 vs. ExPASy TrEMBL
Match: A0A5A7UGY0 (RING-H2 finger protein ATL66 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G003020 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.0e-15
Identity = 42/59 (71.19%), Postives = 48/59 (81.36%), Query Frame = 0


Query: 1  MGVCTETFVDVGSNVLEWYERFPDDDGNDMEIPMMYSQGVDMSPNDIMGTRPSRLSEGR 60
          MG C ETFVDVGSNV   YE F ++DGN+M+IPMMYSQG+DM P DIMGT+PS  SEGR
Sbjct: 38 MGACLETFVDVGSNVSGGYEGFSNEDGNNMKIPMMYSQGLDMPPKDIMGTQPSHSSEGR 96

[Close]

BLAST of PI0011488 vs. ExPASy TrEMBL
Match: A0A5D3BIM9 (RING-H2 finger protein ATL66 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold203G00190 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.0e-15
Identity = 42/59 (71.19%), Postives = 48/59 (81.36%), Query Frame = 0


Query: 1  MGVCTETFVDVGSNVLEWYERFPDDDGNDMEIPMMYSQGVDMSPNDIMGTRPSRLSEGR 60
          MG C ETFVDVGSNV   YE F ++DGN+M+IPMMYSQG+DM P DIMGT+PS  SEGR
Sbjct: 1  MGACLETFVDVGSNVSGGYEGFSNEDGNNMKIPMMYSQGLDMPPKDIMGTQPSHSSEGR 59

[Close]

BLAST of PI0011488 vs. ExPASy TrEMBL
Match: A0A5D3CIS8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold73G00710 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.8e-15
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 6   ETFVDVGSNVLEWYERFPDDDGNDMEIPMMYSQGVDMSPNDIMGTRPSRLSEGRTGSNGS 65
           ETFV+VGSNV+  YE F  +DGND+EIP MYSQG+DMS +DIMGTRP + S+GR  S+ S
Sbjct: 281 ETFVNVGSNVIGGYEGFIGNDGNDIEIPSMYSQGLDMSSDDIMGTRPRQASDGRNASSRS 340

Query: 66  KRKWGG 72
           KRKW G
Sbjct: 341 KRKWVG 346

[Close]

BLAST of PI0011488 vs. ExPASy TrEMBL
Match: A0A5A7UNI7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold697G00630 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.8e-15
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 6   ETFVDVGSNVLEWYERFPDDDGNDMEIPMMYSQGVDMSPNDIMGTRPSRLSEGRTGSNGS 65
           ETFV+VGSNV+  YE F  +DGND+EIP MYSQG+DMS +DIMGTRP + S+GR  S+ S
Sbjct: 276 ETFVNVGSNVIGGYEGFIGNDGNDIEIPSMYSQGLDMSSDDIMGTRPRQASDGRNASSRS 335

Query: 66  KRKWGG 72
           KRKW G
Sbjct: 336 KRKWVG 341

[Close]

BLAST of PI0011488 vs. NCBI nr
Match: KAA0060529.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 104.0 bits (258), Expect = 5.5e-19
Identity = 51/68 (75.00%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 4  CTETFVDVGSNVLEWYERFPDDDGNDMEIPMMYSQGVDMSPNDIMGTRPSRLSEGRTGSN 63
          C ETF DVGSN  E YE F  DDGNDMEIPMMYSQG+DM  +DIMGTRP R +EGRTGS+
Sbjct: 4  CVETFTDVGSNFPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSS 63

Query: 64 GSKRKWGG 72
          GSKRK GG
Sbjct: 64 GSKRKQGG 71

[Close]

BLAST of PI0011488 vs. NCBI nr
Match: KAA0054520.1 (RING-H2 finger protein ATL66 [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 8.2e-15
Identity = 42/59 (71.19%), Postives = 48/59 (81.36%), Query Frame = 0


Query: 1  MGVCTETFVDVGSNVLEWYERFPDDDGNDMEIPMMYSQGVDMSPNDIMGTRPSRLSEGR 60
          MG C ETFVDVGSNV   YE F ++DGN+M+IPMMYSQG+DM P DIMGT+PS  SEGR
Sbjct: 38 MGACLETFVDVGSNVSGGYEGFSNEDGNNMKIPMMYSQGLDMPPKDIMGTQPSHSSEGR 96

[Close]

BLAST of PI0011488 vs. NCBI nr
Match: TYJ98275.1 (RING-H2 finger protein ATL66 [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 8.2e-15
Identity = 42/59 (71.19%), Postives = 48/59 (81.36%), Query Frame = 0


Query: 1  MGVCTETFVDVGSNVLEWYERFPDDDGNDMEIPMMYSQGVDMSPNDIMGTRPSRLSEGR 60
          MG C ETFVDVGSNV   YE F ++DGN+M+IPMMYSQG+DM P DIMGT+PS  SEGR
Sbjct: 1  MGACLETFVDVGSNVSGGYEGFSNEDGNNMKIPMMYSQGLDMPPKDIMGTQPSHSSEGR 59

[Close]

BLAST of PI0011488 vs. NCBI nr
Match: KAA0056167.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 1.4e-14
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 6   ETFVDVGSNVLEWYERFPDDDGNDMEIPMMYSQGVDMSPNDIMGTRPSRLSEGRTGSNGS 65
           ETFV+VGSNV+  YE F  +DGND+EIP MYSQG+DMS +DIMGTRP + S+GR  S+ S
Sbjct: 276 ETFVNVGSNVIGGYEGFIGNDGNDIEIPSMYSQGLDMSSDDIMGTRPRQASDGRNASSRS 335

Query: 66  KRKWGG 72
           KRKW G
Sbjct: 336 KRKWVG 341

[Close]

BLAST of PI0011488 vs. NCBI nr
Match: TYK11084.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 1.4e-14
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 6   ETFVDVGSNVLEWYERFPDDDGNDMEIPMMYSQGVDMSPNDIMGTRPSRLSEGRTGSNGS 65
           ETFV+VGSNV+  YE F  +DGND+EIP MYSQG+DMS +DIMGTRP + S+GR  S+ S
Sbjct: 281 ETFVNVGSNVIGGYEGFIGNDGNDIEIPSMYSQGLDMSSDDIMGTRPRQASDGRNASSRS 340

Query: 66  KRKWGG 72
           KRKW G
Sbjct: 341 KRKWVG 346

The following BLAST results are available for this feature:

BLAST of PI0011488 vs.


Match Name	E-value	Identity	Description

BLAST of PI0011488 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V469	2.7e-19	75.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UGY0	4.0e-15	71.19	RING-H2 finger protein ATL66 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5D3BIM9	4.0e-15	71.19	RING-H2 finger protein ATL66 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5D3CIS8	6.8e-15	66.67	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UNI7	6.8e-15	66.67	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of PI0011488 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060529.1	5.5e-19	75.00	retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon p...	[more]
KAA0054520.1	8.2e-15	71.19	RING-H2 finger protein ATL66 [Cucumis melo var. makuwa]	[more]
TYJ98275.1	8.2e-15	71.19	RING-H2 finger protein ATL66 [Cucumis melo var. makuwa]	[more]
KAA0056167.1	1.4e-14	66.67	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK11084.1	1.4e-14	66.67	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0011488 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0011488.1	PI0011488.1	mRNA