PI0011246 (gene) Melon (PI 482460) v1

Overview


Name	PI0011246
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr03: 23912453 .. 23912725 (+)
RNA-Seq Expression	PI0011246
Synteny	PI0011246

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGAAGCACTGGAACAAGAAGACGAGAAGCATAGTTTTAACATTCTTGATCCACCAATAGTTAGAGGTGAAGAAGTGGATGGACCAATAAATACACAATCTACCATACATACATCAAATAGGTCGAGTAGAAAAAGAAAGAGTGTGAACCCTTGGATAGCGGTAGTAAATTGTCTTAAGAATGTTATGAGTAGTCATCTTACAAATGCTAATGAAAATATTCAAGATATTGCTTCATTTGATCGACAAGTAGCCGAAAAGAGTCTATAA

mRNA sequence

ATGTTTGAAGCACTGGAACAAGAAGACGAGAAGCATAGTTTTAACATTCTTGATCCACCAATAGTTAGAGGTGAAGAAGTGGATGGACCAATAAATACACAATCTACCATACATACATCAAATAGGTCGAGTAGAAAAAGAAAGAGTGTGAACCCTTGGATAGCGGTAGTAAATTGTCTTAAGAATGTTATGAGTAGTCATCTTACAAATGCTAATGAAAATATTCAAGATATTGCTTCATTTGATCGACAAGTAGCCGAAAAGAGTCTATAA

Coding sequence (CDS)

ATGTTTGAAGCACTGGAACAAGAAGACGAGAAGCATAGTTTTAACATTCTTGATCCACCAATAGTTAGAGGTGAAGAAGTGGATGGACCAATAAATACACAATCTACCATACATACATCAAATAGGTCGAGTAGAAAAAGAAAGAGTGTGAACCCTTGGATAGCGGTAGTAAATTGTCTTAAGAATGTTATGAGTAGTCATCTTACAAATGCTAATGAAAATATTCAAGATATTGCTTCATTTGATCGACAAGTAGCCGAAAAGAGTCTATAA

Protein sequence

MFEALEQEDEKHSFNILDPPIVRGEEVDGPINTQSTIHTSNRSSRKRKSVNPWIAVVNCLKNVMSSHLTNANENIQDIASFDRQVAEKSL

Homology

[Close]

BLAST of PI0011246 vs. ExPASy TrEMBL
Match: A0A5A7TE82 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G002380 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.6e-11
Identity = 45/84 (53.57%), Postives = 56/84 (66.67%), Query Frame = 0


Query: 10 EKHSFNILDPPIVRGEEVDG-------PINTQSTIHTSNRSSRKR-KSVNPWIAVVNCLK 69
          E   F +  PPIV  EEVDG         NTQS  HTSNRSS+KR +SV+P +A VN L+
Sbjct: 9  EMDGFYVRKPPIVGEEEVDGFASMSETTTNTQSIAHTSNRSSKKRARSVDPLVAAVNGLE 68

Query: 70 NVMSSHLTNANENIQDIASFDRQV 86
          NVMS HL++AN+NIQ+  +F R V
Sbjct: 69 NVMSKHLSSANDNIQETTAFYRYV 92

[Close]

BLAST of PI0011246 vs. NCBI nr
Match: KAA0041258.1 (hypothetical protein E6C27_scaffold128G002380 [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 5.3e-11
Identity = 45/84 (53.57%), Postives = 56/84 (66.67%), Query Frame = 0


Query: 10 EKHSFNILDPPIVRGEEVDG-------PINTQSTIHTSNRSSRKR-KSVNPWIAVVNCLK 69
          E   F +  PPIV  EEVDG         NTQS  HTSNRSS+KR +SV+P +A VN L+
Sbjct: 9  EMDGFYVRKPPIVGEEEVDGFASMSETTTNTQSIAHTSNRSSKKRARSVDPLVAAVNGLE 68

Query: 70 NVMSSHLTNANENIQDIASFDRQV 86
          NVMS HL++AN+NIQ+  +F R V
Sbjct: 69 NVMSKHLSSANDNIQETTAFYRYV 92

The following BLAST results are available for this feature:

BLAST of PI0011246 vs.


Match Name	E-value	Identity	Description

BLAST of PI0011246 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TE82	2.6e-11	53.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of PI0011246 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041258.1	5.3e-11	53.57	hypothetical protein E6C27_scaffold128G002380 [Cucumis melo var. makuwa]	[more]

BLAST of PI0011246 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0011246.1	PI0011246.1	mRNA