PI0011212 (gene) Melon (PI 482460) v1

Overview


Name	PI0011212
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr04: 10804429 .. 10804593 (+)
RNA-Seq Expression	PI0011212
Synteny	PI0011212

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAACGCTGACATACCAGACGAAGTTGATGAGGGTGACTCAACGTATGCCACTACTGGTGGGGAGGACATACATTATATAGAGACGTCCAACGCATGGAGTCAATGGAGGGACGAGCTTGCAAAAAGAATGTTTTGTGATTGGGAGTTGCGTAATCAGTAA

mRNA sequence

ATGACAAACGCTGACATACCAGACGAAGTTGATGAGGGTGACTCAACGTATGCCACTACTGGTGGGGAGGACATACATTATATAGAGACGTCCAACGCATGGAGTCAATGGAGGGACGAGCTTGCAAAAAGAATGTTTTGTGATTGGGAGTTGCGTAATCAGTAA

Coding sequence (CDS)

ATGACAAACGCTGACATACCAGACGAAGTTGATGAGGGTGACTCAACGTATGCCACTACTGGTGGGGAGGACATACATTATATAGAGACGTCCAACGCATGGAGTCAATGGAGGGACGAGCTTGCAAAAAGAATGTTTTGTGATTGGGAGTTGCGTAATCAGTAA

Protein sequence

MTNADIPDEVDEGDSTYATTGGEDIHYIETSNAWSQWRDELAKRMFCDWELRNQ

Homology

[Close]

BLAST of PI0011212 vs. ExPASy TrEMBL
Match: A0A5A7UIM7 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00420 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.9e-15
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 1   MTNADIPDEVDEGDSTYATTGGEDIHYIETSNAWSQWRDELAKRMFCDWELRNQ 55
           MTN DI D +DE DST+ATT  +DIHYIETSN WSQWRD+LA+ MF DWELRNQ
Sbjct: 254 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTDWELRNQ 307

[Close]

BLAST of PI0011212 vs. ExPASy TrEMBL
Match: A0A5D3BL48 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00970 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.7e-15
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 1   MTNADIPDEVDEGDSTYATTGGEDIHYIETSNAWSQWRDELAKRMFCDWELRNQ 55
           MTN DI D +DE DST+ATT  +DIHYIETSN WSQWRD+LA+ MF DWELRNQ
Sbjct: 161 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 214

[Close]

BLAST of PI0011212 vs. ExPASy TrEMBL
Match: A0A5A7VJX3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40G001490 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.7e-15
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 1   MTNADIPDEVDEGDSTYATTGGEDIHYIETSNAWSQWRDELAKRMFCDWELRNQ 55
           MTN DI D +DE DST+ATT  +DIHYIETSN WSQWRD+LA+ MF DWELRNQ
Sbjct: 254 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 307

[Close]

BLAST of PI0011212 vs. ExPASy TrEMBL
Match: A0A5D3D9Z3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold519G00220 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-14
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 1   MTNADIPDEVDEGDSTYATTGGEDIHYIETSNAWSQWRDELAKRMFCDWELRNQ 55
           MTN DI D +DE DST+ATT  +DIHYIETSN WSQWRD+LA+ MF +WELRNQ
Sbjct: 313 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 366

[Close]

BLAST of PI0011212 vs. ExPASy TrEMBL
Match: A0A5A7TWH8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G001380 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-14
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 1   MTNADIPDEVDEGDSTYATTGGEDIHYIETSNAWSQWRDELAKRMFCDWELRNQ 55
           MTN DI D +DE DST+ATT  +DIHYIETSN WSQWRD+LA+ MF +WELRNQ
Sbjct: 335 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 388

[Close]

BLAST of PI0011212 vs. NCBI nr
Match: KAA0054126.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 8.1e-15
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 1   MTNADIPDEVDEGDSTYATTGGEDIHYIETSNAWSQWRDELAKRMFCDWELRNQ 55
           MTN DI D +DE DST+ATT  +DIHYIETSN WSQWRD+LA+ MF DWELRNQ
Sbjct: 254 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTDWELRNQ 307

[Close]

BLAST of PI0011212 vs. NCBI nr
Match: KAA0067470.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 1.4e-14
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 1   MTNADIPDEVDEGDSTYATTGGEDIHYIETSNAWSQWRDELAKRMFCDWELRNQ 55
           MTN DI D +DE DST+ATT  +DIHYIETSN WSQWRD+LA+ MF DWELRNQ
Sbjct: 254 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 307

[Close]

BLAST of PI0011212 vs. NCBI nr
Match: TYJ99699.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 1.4e-14
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 1   MTNADIPDEVDEGDSTYATTGGEDIHYIETSNAWSQWRDELAKRMFCDWELRNQ 55
           MTN DI D +DE DST+ATT  +DIHYIETSN WSQWRD+LA+ MF DWELRNQ
Sbjct: 161 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 214

[Close]

BLAST of PI0011212 vs. NCBI nr
Match: KAA0065286.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 2.4e-14
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 1   MTNADIPDEVDEGDSTYATTGGEDIHYIETSNAWSQWRDELAKRMFCDWELRNQ 55
           MTN DI D +DE DST+ATT  +DIHYIETSN WSQWRD+LA+ MF +WELRNQ
Sbjct: 335 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 388

[Close]

BLAST of PI0011212 vs. NCBI nr
Match: KAA0048281.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 2.4e-14
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 1   MTNADIPDEVDEGDSTYATTGGEDIHYIETSNAWSQWRDELAKRMFCDWELRNQ 55
           MTN DI D +DE DST+ATT  +DIHYIETSN WSQWRD+LA+ MF +WELRNQ
Sbjct: 269 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 322

The following BLAST results are available for this feature:

BLAST of PI0011212 vs.


Match Name	E-value	Identity	Description

BLAST of PI0011212 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UIM7	3.9e-15	74.07	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5D3BL48	6.7e-15	74.07	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7VJX3	6.7e-15	74.07	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3D9Z3	1.1e-14	72.22	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TWH8	1.1e-14	72.22	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of PI0011212 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054126.1	8.1e-15	74.07	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
KAA0067470.1	1.4e-14	74.07	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYJ99699.1	1.4e-14	74.07	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
KAA0065286.1	2.4e-14	72.22	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0048281.1	2.4e-14	72.22	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0011212 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0011212.1	PI0011212.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding