Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTATCTCAGCAGACTTCTTGACCATCTGATGCAAAATAATTCCATTGGAGGCGTTAGATTCAGCAATAATTGTTATCTCAACCACATTCTTTTTGCAGATGATATTTTGATCTTTATGGAAGACAACAATGATCAGATGAGAAACTTGTTCCTTGCTATAAGATCTTTTTGAGCTAGCCTCTAGTCTCAGTTTCAACAGAACAAAATCTACCATCTTCCCAATCAATGTATCTGAGGAAAGAACATTAACAATTGCAACTGACTGGGGTATCTCTTGGGGTTCACTACCAACAAAATATCTTGGTGTCCCGCTGGGTGGTAATCCAAATTCAAAGGCATTCTGGGAAAACATTGAAAGGAAAGTTCATAAGAAGCTTAATAGTTGGAAGTATACTCATATATCCAAAGGCAGAAAGTTAACTTTATTGAAGGCAACTCTTTCTAATCTGCCTACTTACCAACTCTCGATTTTTAAAGCTCCAGCCTCTACTTGTGATATTATTGAGAGACATTGGCGTGATTTCCTTTGGCATGACAAAGCAAATGAAAAAAGAATGCATCTAGTCAACTGGGATACTGTCACTACTCCAAAGGAAAAAGGAGGCTTGGGGATCAATAAAGTTAGAAACACAAACTTTGCCTTTATGTGTAAATGGCTGTGGCGTTTTCAAAATGAACCACAGTCGTTGTGGAGAAAAGTCATTGCTGCAAAATATAAAGGCCTGTATCTTGGCTCCATTCCTACTGAAGGGCAATACAGCAGTAAAAAAGCTCCTTAG
mRNA sequence
ATGGACTATCTCAGCAGACTTCTTGACCATCTGATGCAAAATAATTCCATTGGAGGCGTTAGATTCAGCAATAATTGTTATCTCAACCACATTCTTTTTGCAGATGATATTTTGATCTTTATGGAAGACAACAATGATCAGATGAGAAACTTTCTCAGTTTCAACAGAACAAAATCTACCATCTTCCCAATCAATGTATCTGAGGAAAGAACATTAACAATTGCAACTGACTGGGGTATCTCTTGGGGTTCACTACCAACAAAATATCTTGGTGTCCCGCTGGGTGGTAATCCAAATTCAAAGGCATTCTGGGAAAACATTGAAAGGAAAGTTCATAAGAAGCTTAATAGTTGGAAGTATACTCATATATCCAAAGGCAGAAAGTTAACTTTATTGAAGGCAACTCTTTCTAATCTGCCTACTTACCAACTCTCGATTTTTAAAGCTCCAGCCTCTACTTGTGATATTATTGAGAGACATTGGCGTGATTTCCTTTGGCATGACAAAGCAAATGAAAAAAGAATGCATCTAGTCAACTGGGATACTGTCACTACTCCAAAGGAAAAAGGAGGCTTGGGGATCAATAAAGTTAGAAACACAAACTTTGCCTTTATGTGTAAATGGCTGTGGCGTTTTCAAAATGAACCACAGTCGTTGTGGAGAAAAGTCATTGCTGCAAAATATAAAGGCCTGTATCTTGGCTCCATTCCTACTGAAGGGCAATACAGCAGTAAAAAAGCTCCTTAG
Coding sequence (CDS)
ATGGACTATCTCAGCAGACTTCTTGACCATCTGATGCAAAATAATTCCATTGGAGGCGTTAGATTCAGCAATAATTGTTATCTCAACCACATTCTTTTTGCAGATGATATTTTGATCTTTATGGAAGACAACAATGATCAGATGAGAAACTTTCTCAGTTTCAACAGAACAAAATCTACCATCTTCCCAATCAATGTATCTGAGGAAAGAACATTAACAATTGCAACTGACTGGGGTATCTCTTGGGGTTCACTACCAACAAAATATCTTGGTGTCCCGCTGGGTGGTAATCCAAATTCAAAGGCATTCTGGGAAAACATTGAAAGGAAAGTTCATAAGAAGCTTAATAGTTGGAAGTATACTCATATATCCAAAGGCAGAAAGTTAACTTTATTGAAGGCAACTCTTTCTAATCTGCCTACTTACCAACTCTCGATTTTTAAAGCTCCAGCCTCTACTTGTGATATTATTGAGAGACATTGGCGTGATTTCCTTTGGCATGACAAAGCAAATGAAAAAAGAATGCATCTAGTCAACTGGGATACTGTCACTACTCCAAAGGAAAAAGGAGGCTTGGGGATCAATAAAGTTAGAAACACAAACTTTGCCTTTATGTGTAAATGGCTGTGGCGTTTTCAAAATGAACCACAGTCGTTGTGGAGAAAAGTCATTGCTGCAAAATATAAAGGCCTGTATCTTGGCTCCATTCCTACTGAAGGGCAATACAGCAGTAAAAAAGCTCCTTAG
Protein sequence
MDYLSRLLDHLMQNNSIGGVRFSNNCYLNHILFADDILIFMEDNNDQMRNFLSFNRTKSTIFPINVSEERTLTIATDWGISWGSLPTKYLGVPLGGNPNSKAFWENIERKVHKKLNSWKYTHISKGRKLTLLKATLSNLPTYQLSIFKAPASTCDIIERHWRDFLWHDKANEKRMHLVNWDTVTTPKEKGGLGINKVRNTNFAFMCKWLWRFQNEPQSLWRKVIAAKYKGLYLGSIPTEGQYSSKKAP
Homology
BLAST of PI0010893 vs. ExPASy Swiss-Prot
Match:
P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)
HSP 1 Score: 97.1 bits (240), Expect = 3.1e-19
Identity = 48/130 (36.92%), Postives = 73/130 (56.15%), Query Frame = 0
Query: 99 NSKAFWENIERKVHKKLNSWKYTHISKGRKLTLLKATLSNLPTYQLSIFKAPASTCDIIE 158
N F E +ER V +++ W+ +S +LTL KA LS++P + +S P S + ++
Sbjct: 9 NKDTFGEILER-VSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLD 68
Query: 159 RHWRDFLWHDKANEKRMHLVNWDTVTTPKEKGGLGINKVRNTNFAFMCKWLWRFQNEPQS 218
+ R FLW A +K+ HLV W V +PK++GGLG+ ++ N A + K WR E S
Sbjct: 69 QLSRTFLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNS 128
Query: 219 LWRKVIAAKY 229
LW V+ KY
Sbjct: 129 LWTLVLQKKY 137
BLAST of PI0010893 vs. ExPASy TrEMBL
Match:
A0A5A7TTK1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G00450 PE=4 SV=1)
HSP 1 Score: 294.3 bits (752), Expect = 4.8e-76
Identity = 141/260 (54.23%), Postives = 181/260 (69.62%), Query Frame = 0
Query: 1 MDYLSRLLDHLMQNNSIGGVRFSNNCYLNHILFADDILIFMEDNNDQMRNF--------- 60
MDYLSRLL HL +I GV FS+NC ++HILFADDIL+F+EDN+ + N
Sbjct: 495 MDYLSRLLSHLEITGAIKGVSFSSNCNISHILFADDILLFIEDNDFFLNNLRMALSLFER 554
Query: 61 ---LSFNRTKSTIFPINVSEERTLTIATDWGISWGSLPTKYLGVPLGGNPNSKAFWENIE 120
L N KS + P+NVSE R A+ WGIS SLP YLGVPLGGNP S+ FW N+E
Sbjct: 555 ASGLKINLLKSALVPMNVSEIRAKECASFWGISSQSLPLSYLGVPLGGNPKSRLFWSNVE 614
Query: 121 RKVHKKLNSWKYTHISKGRKLTLLKATLSNLPTYQLSIFKAPASTCDIIERHWRDFLWHD 180
K+ KKLN+WKY ISKG +LTL+K+TLS+LPTYQLS+F+AP+ TC IE+ WR+FLW
Sbjct: 615 EKIQKKLNNWKYAQISKGGRLTLIKSTLSSLPTYQLSVFQAPSLTCKNIEKFWRNFLWKG 674
Query: 181 KANEKRMHLVNWDTVTTPKEKGGLGINKVRNTNFAFMCKWLWRFQNEPQSLWRKVIAAKY 240
+ + HL+NW VT K +GGLGI++V TN A + KWLWR+ +EP++LWR++I KY
Sbjct: 675 NNSSEGFHLINWTKVTKSKAEGGLGISRVHVTNKALLTKWLWRYLSEPKALWRRLIQCKY 734
Query: 241 KGLYLGSIPTEGQYSSKKAP 249
KG+Y G IP+ S+ KAP
Sbjct: 735 KGIYPGDIPSNISSSTSKAP 754
BLAST of PI0010893 vs. ExPASy TrEMBL
Match:
A0A5A7UTI6 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005580 PE=4 SV=1)
HSP 1 Score: 293.5 bits (750), Expect = 8.2e-76
Identity = 142/260 (54.62%), Postives = 178/260 (68.46%), Query Frame = 0
Query: 1 MDYLSRLLDHLMQNNSIGGVRFSNNCYLNHILFADDILIFMEDNNDQMRNF--------- 60
MDYLSRLL HL +I GV F+N C ++H+LFADD+LIF+EDN + N
Sbjct: 208 MDYLSRLLSHLESKGAIKGVSFNNYCNISHLLFADDVLIFVEDNERYLNNLQMALTLFEK 267
Query: 61 ---LSFNRTKSTIFPINVSEERTLTIATDWGISWGSLPTKYLGVPLGGNPNSKAFWENIE 120
L+FN +KSTI PIN+S RT IA+ +G LP YLGVPLGGNP S++FW
Sbjct: 268 ASGLTFNNSKSTISPINISAGRTDQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWSQTI 327
Query: 121 RKVHKKLNSWKYTHISKGRKLTLLKATLSNLPTYQLSIFKAPASTCDIIERHWRDFLWHD 180
+HKKLN WKY+ ISKG +LTLLKA+LS+LPTYQLS FKAP S IE+HWRDFLW
Sbjct: 328 ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 387
Query: 181 KANEKRMHLVNWDTVTTPKEKGGLGINKVRNTNFAFMCKWLWRFQNEPQSLWRKVIAAKY 240
+++ HL+NW+ T+PKE GGLGI+KV++TN A +CKWLWR+ NE SLW+K I AKY
Sbjct: 388 SEDKQNAHLINWNICTSPKELGGLGISKVKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 447
Query: 241 KGLYLGSIPTEGQYSSKKAP 249
+ G IP G+ SS +P
Sbjct: 448 TKNHQGDIPVVGRNSSANSP 467
BLAST of PI0010893 vs. ExPASy TrEMBL
Match:
A0A5D3CA17 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00050 PE=4 SV=1)
HSP 1 Score: 293.1 bits (749), Expect = 1.1e-75
Identity = 141/260 (54.23%), Postives = 179/260 (68.85%), Query Frame = 0
Query: 1 MDYLSRLLDHLMQNNSIGGVRFSNNCYLNHILFADDILIFMEDNNDQMRNF--------- 60
MDYLSRLL HL +I GV F+N C ++H+LFADD+LIF+EDN + N
Sbjct: 1261 MDYLSRLLSHLESKGAIKGVSFNNYCNISHLLFADDVLIFVEDNERYLNNLQMALTLFEK 1320
Query: 61 ---LSFNRTKSTIFPINVSEERTLTIATDWGISWGSLPTKYLGVPLGGNPNSKAFWENIE 120
L+FN +KSTI PIN+S RT IA+ +G LP YLGVPLGGNP S++FW+
Sbjct: 1321 ASGLTFNNSKSTISPINISAGRTDQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWDQTI 1380
Query: 121 RKVHKKLNSWKYTHISKGRKLTLLKATLSNLPTYQLSIFKAPASTCDIIERHWRDFLWHD 180
+HKKLN WKY+ ISKG +LTLLKA+LS+LPTYQLS FKAP S IE+HWRDFLW
Sbjct: 1381 ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 1440
Query: 181 KANEKRMHLVNWDTVTTPKEKGGLGINKVRNTNFAFMCKWLWRFQNEPQSLWRKVIAAKY 240
+++ HL+NW+ T+PKE GGLGI+K+++TN A +CKWLWR+ NE SLW+K I AKY
Sbjct: 1441 SEDKQNAHLINWNICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 1500
Query: 241 KGLYLGSIPTEGQYSSKKAP 249
+ G IP G+ SS +P
Sbjct: 1501 TKNHQGDIPVVGRNSSANSP 1520
BLAST of PI0010893 vs. ExPASy TrEMBL
Match:
A0A5A7US62 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G003960 PE=4 SV=1)
HSP 1 Score: 292.7 bits (748), Expect = 1.4e-75
Identity = 141/260 (54.23%), Postives = 179/260 (68.85%), Query Frame = 0
Query: 1 MDYLSRLLDHLMQNNSIGGVRFSNNCYLNHILFADDILIFMEDNNDQMRNF--------- 60
MDYLSRLL HL +I GV F+N C ++H+LFADD+LIF+EDN + N
Sbjct: 1261 MDYLSRLLSHLESKGAIKGVSFNNCCNISHLLFADDVLIFVEDNERYLNNLQMALTLFEK 1320
Query: 61 ---LSFNRTKSTIFPINVSEERTLTIATDWGISWGSLPTKYLGVPLGGNPNSKAFWENIE 120
L+FN +KSTI PIN+S RT IA+ +G LP YLGVPLGGNP S++FW+
Sbjct: 1321 ASGLTFNNSKSTISPINISAGRTDQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWDQTI 1380
Query: 121 RKVHKKLNSWKYTHISKGRKLTLLKATLSNLPTYQLSIFKAPASTCDIIERHWRDFLWHD 180
+HKKLN WKY+ ISKG +LTLLKA+LS+LPTYQLS FKAP S IE+HWRDFLW
Sbjct: 1381 ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 1440
Query: 181 KANEKRMHLVNWDTVTTPKEKGGLGINKVRNTNFAFMCKWLWRFQNEPQSLWRKVIAAKY 240
+++ HL+NW+ T+PKE GGLGI+K+++TN A +CKWLWR+ NE SLW+K I AKY
Sbjct: 1441 SEDKQNAHLINWNICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 1500
Query: 241 KGLYLGSIPTEGQYSSKKAP 249
+ G IP G+ SS +P
Sbjct: 1501 TKNHQGDIPVVGRNSSANSP 1520
BLAST of PI0010893 vs. ExPASy TrEMBL
Match:
A0A5D3DZM5 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold303G00720 PE=4 SV=1)
HSP 1 Score: 292.4 bits (747), Expect = 1.8e-75
Identity = 140/260 (53.85%), Postives = 179/260 (68.85%), Query Frame = 0
Query: 1 MDYLSRLLDHLMQNNSIGGVRFSNNCYLNHILFADDILIFMEDNNDQMRNF--------- 60
MDYLSRLL HL +I GV F+N C ++H+LFADD+LIF+EDN + N
Sbjct: 129 MDYLSRLLSHLESKGAIKGVSFNNYCNISHLLFADDVLIFVEDNERYLNNLQMALTLFEK 188
Query: 61 ---LSFNRTKSTIFPINVSEERTLTIATDWGISWGSLPTKYLGVPLGGNPNSKAFWENIE 120
L+FN +KSTI PIN+S RT IA+ +G LP YLGVPLGGNP S++FW+
Sbjct: 189 ASGLTFNNSKSTISPINISAGRTDQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWDQTI 248
Query: 121 RKVHKKLNSWKYTHISKGRKLTLLKATLSNLPTYQLSIFKAPASTCDIIERHWRDFLWHD 180
+HKKLN WKY+ ISKG +LTLLKA+LS+LPTYQLS FKAP S IE+HWRDFLW
Sbjct: 249 ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 308
Query: 181 KANEKRMHLVNWDTVTTPKEKGGLGINKVRNTNFAFMCKWLWRFQNEPQSLWRKVIAAKY 240
+++ HL+NW+ T+PKE GG+GI+K+++TN A +CKWLWR+ NE SLW+K I AKY
Sbjct: 309 SEDKQNAHLINWNICTSPKELGGMGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 368
Query: 241 KGLYLGSIPTEGQYSSKKAP 249
+ G IP G+ SS +P
Sbjct: 369 TKNHQGDIPVVGRNSSANSP 388
BLAST of PI0010893 vs. NCBI nr
Match:
KAA0046762.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 294.3 bits (752), Expect = 1.0e-75
Identity = 141/260 (54.23%), Postives = 181/260 (69.62%), Query Frame = 0
Query: 1 MDYLSRLLDHLMQNNSIGGVRFSNNCYLNHILFADDILIFMEDNNDQMRNF--------- 60
MDYLSRLL HL +I GV FS+NC ++HILFADDIL+F+EDN+ + N
Sbjct: 495 MDYLSRLLSHLEITGAIKGVSFSSNCNISHILFADDILLFIEDNDFFLNNLRMALSLFER 554
Query: 61 ---LSFNRTKSTIFPINVSEERTLTIATDWGISWGSLPTKYLGVPLGGNPNSKAFWENIE 120
L N KS + P+NVSE R A+ WGIS SLP YLGVPLGGNP S+ FW N+E
Sbjct: 555 ASGLKINLLKSALVPMNVSEIRAKECASFWGISSQSLPLSYLGVPLGGNPKSRLFWSNVE 614
Query: 121 RKVHKKLNSWKYTHISKGRKLTLLKATLSNLPTYQLSIFKAPASTCDIIERHWRDFLWHD 180
K+ KKLN+WKY ISKG +LTL+K+TLS+LPTYQLS+F+AP+ TC IE+ WR+FLW
Sbjct: 615 EKIQKKLNNWKYAQISKGGRLTLIKSTLSSLPTYQLSVFQAPSLTCKNIEKFWRNFLWKG 674
Query: 181 KANEKRMHLVNWDTVTTPKEKGGLGINKVRNTNFAFMCKWLWRFQNEPQSLWRKVIAAKY 240
+ + HL+NW VT K +GGLGI++V TN A + KWLWR+ +EP++LWR++I KY
Sbjct: 675 NNSSEGFHLINWTKVTKSKAEGGLGISRVHVTNKALLTKWLWRYLSEPKALWRRLIQCKY 734
Query: 241 KGLYLGSIPTEGQYSSKKAP 249
KG+Y G IP+ S+ KAP
Sbjct: 735 KGIYPGDIPSNISSSTSKAP 754
BLAST of PI0010893 vs. NCBI nr
Match:
KAA0056839.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYJ99342.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 293.5 bits (750), Expect = 1.7e-75
Identity = 142/260 (54.62%), Postives = 178/260 (68.46%), Query Frame = 0
Query: 1 MDYLSRLLDHLMQNNSIGGVRFSNNCYLNHILFADDILIFMEDNNDQMRNF--------- 60
MDYLSRLL HL +I GV F+N C ++H+LFADD+LIF+EDN + N
Sbjct: 208 MDYLSRLLSHLESKGAIKGVSFNNYCNISHLLFADDVLIFVEDNERYLNNLQMALTLFEK 267
Query: 61 ---LSFNRTKSTIFPINVSEERTLTIATDWGISWGSLPTKYLGVPLGGNPNSKAFWENIE 120
L+FN +KSTI PIN+S RT IA+ +G LP YLGVPLGGNP S++FW
Sbjct: 268 ASGLTFNNSKSTISPINISAGRTDQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWSQTI 327
Query: 121 RKVHKKLNSWKYTHISKGRKLTLLKATLSNLPTYQLSIFKAPASTCDIIERHWRDFLWHD 180
+HKKLN WKY+ ISKG +LTLLKA+LS+LPTYQLS FKAP S IE+HWRDFLW
Sbjct: 328 ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 387
Query: 181 KANEKRMHLVNWDTVTTPKEKGGLGINKVRNTNFAFMCKWLWRFQNEPQSLWRKVIAAKY 240
+++ HL+NW+ T+PKE GGLGI+KV++TN A +CKWLWR+ NE SLW+K I AKY
Sbjct: 388 SEDKQNAHLINWNICTSPKELGGLGISKVKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 447
Query: 241 KGLYLGSIPTEGQYSSKKAP 249
+ G IP G+ SS +P
Sbjct: 448 TKNHQGDIPVVGRNSSANSP 467
BLAST of PI0010893 vs. NCBI nr
Match:
TYK08190.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 293.1 bits (749), Expect = 2.2e-75
Identity = 141/260 (54.23%), Postives = 179/260 (68.85%), Query Frame = 0
Query: 1 MDYLSRLLDHLMQNNSIGGVRFSNNCYLNHILFADDILIFMEDNNDQMRNF--------- 60
MDYLSRLL HL +I GV F+N C ++H+LFADD+LIF+EDN + N
Sbjct: 1261 MDYLSRLLSHLESKGAIKGVSFNNYCNISHLLFADDVLIFVEDNERYLNNLQMALTLFEK 1320
Query: 61 ---LSFNRTKSTIFPINVSEERTLTIATDWGISWGSLPTKYLGVPLGGNPNSKAFWENIE 120
L+FN +KSTI PIN+S RT IA+ +G LP YLGVPLGGNP S++FW+
Sbjct: 1321 ASGLTFNNSKSTISPINISAGRTDQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWDQTI 1380
Query: 121 RKVHKKLNSWKYTHISKGRKLTLLKATLSNLPTYQLSIFKAPASTCDIIERHWRDFLWHD 180
+HKKLN WKY+ ISKG +LTLLKA+LS+LPTYQLS FKAP S IE+HWRDFLW
Sbjct: 1381 ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 1440
Query: 181 KANEKRMHLVNWDTVTTPKEKGGLGINKVRNTNFAFMCKWLWRFQNEPQSLWRKVIAAKY 240
+++ HL+NW+ T+PKE GGLGI+K+++TN A +CKWLWR+ NE SLW+K I AKY
Sbjct: 1441 SEDKQNAHLINWNICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 1500
Query: 241 KGLYLGSIPTEGQYSSKKAP 249
+ G IP G+ SS +P
Sbjct: 1501 TKNHQGDIPVVGRNSSANSP 1520
BLAST of PI0010893 vs. NCBI nr
Match:
KAA0057507.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 292.7 bits (748), Expect = 2.9e-75
Identity = 141/260 (54.23%), Postives = 179/260 (68.85%), Query Frame = 0
Query: 1 MDYLSRLLDHLMQNNSIGGVRFSNNCYLNHILFADDILIFMEDNNDQMRNF--------- 60
MDYLSRLL HL +I GV F+N C ++H+LFADD+LIF+EDN + N
Sbjct: 1261 MDYLSRLLSHLESKGAIKGVSFNNCCNISHLLFADDVLIFVEDNERYLNNLQMALTLFEK 1320
Query: 61 ---LSFNRTKSTIFPINVSEERTLTIATDWGISWGSLPTKYLGVPLGGNPNSKAFWENIE 120
L+FN +KSTI PIN+S RT IA+ +G LP YLGVPLGGNP S++FW+
Sbjct: 1321 ASGLTFNNSKSTISPINISAGRTDQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWDQTI 1380
Query: 121 RKVHKKLNSWKYTHISKGRKLTLLKATLSNLPTYQLSIFKAPASTCDIIERHWRDFLWHD 180
+HKKLN WKY+ ISKG +LTLLKA+LS+LPTYQLS FKAP S IE+HWRDFLW
Sbjct: 1381 ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 1440
Query: 181 KANEKRMHLVNWDTVTTPKEKGGLGINKVRNTNFAFMCKWLWRFQNEPQSLWRKVIAAKY 240
+++ HL+NW+ T+PKE GGLGI+K+++TN A +CKWLWR+ NE SLW+K I AKY
Sbjct: 1441 SEDKQNAHLINWNICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 1500
Query: 241 KGLYLGSIPTEGQYSSKKAP 249
+ G IP G+ SS +P
Sbjct: 1501 TKNHQGDIPVVGRNSSANSP 1520
BLAST of PI0010893 vs. NCBI nr
Match:
TYK28859.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 292.4 bits (747), Expect = 3.8e-75
Identity = 140/260 (53.85%), Postives = 179/260 (68.85%), Query Frame = 0
Query: 1 MDYLSRLLDHLMQNNSIGGVRFSNNCYLNHILFADDILIFMEDNNDQMRNF--------- 60
MDYLSRLL HL +I GV F+N C ++H+LFADD+LIF+EDN + N
Sbjct: 129 MDYLSRLLSHLESKGAIKGVSFNNYCNISHLLFADDVLIFVEDNERYLNNLQMALTLFEK 188
Query: 61 ---LSFNRTKSTIFPINVSEERTLTIATDWGISWGSLPTKYLGVPLGGNPNSKAFWENIE 120
L+FN +KSTI PIN+S RT IA+ +G LP YLGVPLGGNP S++FW+
Sbjct: 189 ASGLTFNNSKSTISPINISAGRTDQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWDQTI 248
Query: 121 RKVHKKLNSWKYTHISKGRKLTLLKATLSNLPTYQLSIFKAPASTCDIIERHWRDFLWHD 180
+HKKLN WKY+ ISKG +LTLLKA+LS+LPTYQLS FKAP S IE+HWRDFLW
Sbjct: 249 ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 308
Query: 181 KANEKRMHLVNWDTVTTPKEKGGLGINKVRNTNFAFMCKWLWRFQNEPQSLWRKVIAAKY 240
+++ HL+NW+ T+PKE GG+GI+K+++TN A +CKWLWR+ NE SLW+K I AKY
Sbjct: 309 SEDKQNAHLINWNICTSPKELGGMGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 368
Query: 241 KGLYLGSIPTEGQYSSKKAP 249
+ G IP G+ SS +P
Sbjct: 369 TKNHQGDIPVVGRNSSANSP 388
BLAST of PI0010893 vs. TAIR 10
Match:
AT3G24255.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )
HSP 1 Score: 72.4 bits (176), Expect = 5.8e-13
Identity = 34/119 (28.57%), Postives = 61/119 (51.26%), Query Frame = 0
Query: 83 GSLPTKYLGVPLGGNPNSKAFWENIERKVHKKLNSWKYTHISKGRKLTLLKATLSNLPTY 142
G+LP +YLG+PL + + + + K+ ++ W H+S +L L+ + + +L +
Sbjct: 21 GALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNF 80
Query: 143 QLSIFKAPASTCDIIERHWRDFLWHDKANEKRMHLVNWDTVTTPKEKGGLGINKVRNTN 202
+S F+ P++ I+ FLW + V W V TPK++GGLGI ++ N
Sbjct: 81 WMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEAN 139
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| P0C2F6 | 3.1e-19 | 36.92 | Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7TTK1 | 4.8e-76 | 54.23 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
| A0A5A7UTI6 | 8.2e-76 | 54.62 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
| A0A5D3CA17 | 1.1e-75 | 54.23 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
| A0A5A7US62 | 1.4e-75 | 54.23 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
| A0A5D3DZM5 | 1.8e-75 | 53.85 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0046762.1 | 1.0e-75 | 54.23 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
| KAA0056839.1 | 1.7e-75 | 54.62 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYJ993... | [more] |
| TYK08190.1 | 2.2e-75 | 54.23 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
| KAA0057507.1 | 2.9e-75 | 54.23 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
| TYK28859.1 | 3.8e-75 | 53.85 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT3G24255.1 | 5.8e-13 | 28.57 | RNA-directed DNA polymerase (reverse transcriptase)-related family protein | [more] |
