PI0010861 (gene) Melon (PI 482460) v1

Overview


Name	PI0010861
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon gag protein
Location	chr04: 27102194 .. 27103628 (-)
RNA-Seq Expression	PI0010861
Synteny	PI0010861

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTACTTTATTAACTTCCTTTGTGCAAGGTGGATCTGTGAAAGTTGCTAAGTGCGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTGCCCTGACTTAGTGGAAGAAGCAAATGTCATTAGGAAGTACGATCCTCATAGCAATACTTACAATGTCGGTTGGAGAGACAACCTTAATCTAAGGTGGGGAAACGACAACCAAAGACCCTCACAAGCAACTTCCTCTTCAAACAATCAAGGTACGAATTTAGAAGATCTAGTTAAAGCTCTTGCTACTAACACCATCTCTTTTCAAAATGAAATGAAGCAACAAATGTCTCATCTTACAAATGCGATTAGCAAGCTAGAAGGTAAAGGCAAACTTCCCGTTCAGCCAGATCATGCTAACGTAAGTACCATCTCACTTAGAAGCGGTAAGATTCTGGAAACCCCTTCAAGTGAAGAAAAGGTAATTTCTACCCTTATCCTTCTAGAAAATAATGATGAGAAAAAGGAAGAAAAATTAGAAACAAATTCTCTACCATCAAGTTCTAACAAAGGGAAATCCCATATACTTGATTTTACTCCTTATGTCCCTAAAGCTCCTTTTCCTTCCAGGTTAGCTCCTTAAAAGAAAGAATCGCCGAAGGAAGAAGAACTTTTAGAGATGTTCAGAGAGGTGCAAATAAACCTACCTCTACTTGATGCAATCCAACAAGTCCCAAGGTATGCTAAGTTTCTCAAAGAATTGTGCACAAACAAAAGGAAAATCAAGGAGAAACCGATGGTAAGTCATAATGTTTCTGCCCTTCTAAAGAATTCTATTCCTAAAAAACAAAACGATCCTGGTATGTTTTCTCTTCCTTGCATTATAGGCAATAGGCCAATTTCCCATGCAATGCTTGACTTAGGAGCATCTGTAAATGTCATGCCATATTCTGTATATAAAGATCTAGAATTAAACAACTTGCAAAAAACAAGTGTATGCATTCAACTAGCTAATAGATCTTTTATATCGCCGCTAGGAATTGTAGAAGATGTACTTGTTAAAGTAGACAAATTAATATTTCCTGTGGATTTTTACATTATAGACATGAATGATGCATGCTCTAAACCTTTCCATTCAATTCTACTAGGAAGACCTTTTCTTAAGACTGCTAAAGCAATAATAGATGTAGATAAAGGCTCCTTAAGTGTAGAATTTGATGGAGATGTAGTGACATGTAACATTTTTGAATCAATGAAATATCCTGAAGAATGTCTATCTTTATGCTCACTAGAATTGCATGATGAAATGGAAGAAATGCCTATTGATGTTGAATTTTCTAAACAAGAATTGGATGAAATTGATGATGATAAAGAGATGATAGAAGTAGAAATGGATGAAAATTTAGATCTTGAAAACAATAATTCTGACAATTTTTCTTTTCTCCCCAGGAAAAAGGGATTGA

mRNA sequence

ATGACTACTTTATTAACTTCCTTTGTGCAAGGTGGATCTGTGAAAGTTGCTAAGTGCGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTGCCCTGACTTAGTGGAAGAAGCAAATGTCATTAGGAAGTACGATCCTCATAGCAATACTTACAATGTCGGTTGGAGAGACAACCTTAATCTAAGGTGGGGAAACGACAACCAAAGACCCTCACAAGCAACTTCCTCTTCAAACAATCAAGGTACGAATTTAGAAGATCTAGTTAAAGCTCTTGCTACTAACACCATCTCTTTTCAAAATGAAATGAAGCAACAAATGTCTCATCTTACAAATGCGATTAGCAAGCTAGAAGGTAAAGGCAAACTTCCCGTTCAGCCAGATCATGCTAACGTAAGTACCATCTCACTTAGAAGCGGAAAAAGGGATTGA

Coding sequence (CDS)

ATGACTACTTTATTAACTTCCTTTGTGCAAGGTGGATCTGTGAAAGTTGCTAAGTGCGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTGCCCTGACTTAGTGGAAGAAGCAAATGTCATTAGGAAGTACGATCCTCATAGCAATACTTACAATGTCGGTTGGAGAGACAACCTTAATCTAAGGTGGGGAAACGACAACCAAAGACCCTCACAAGCAACTTCCTCTTCAAACAATCAAGGTACGAATTTAGAAGATCTAGTTAAAGCTCTTGCTACTAACACCATCTCTTTTCAAAATGAAATGAAGCAACAAATGTCTCATCTTACAAATGCGATTAGCAAGCTAGAAGGTAAAGGCAAACTTCCCGTTCAGCCAGATCATGCTAACGTAAGTACCATCTCACTTAGAAGCGGAAAAAGGGATTGA

Protein sequence

MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNLNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGKGKLPVQPDHANVSTISLRSGKRD

Homology

[Close]

BLAST of PI0010861 vs. ExPASy TrEMBL
Match: A0A5D3CB46 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold544G00170 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 6.9e-59
Identity = 110/141 (78.01%), Postives = 127/141 (90.07%), Query Frame = 0


Query: 1   MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNL 60
           MTTLLTSFVQG   KV KCGVCGLVGHPNDKCP ++E+ N++R+YDPHSNTYN GWRDNL
Sbjct: 106 MTTLLTSFVQGTPPKVTKCGVCGLVGHPNDKCPKVIEDVNIVRRYDPHSNTYNSGWRDNL 165

Query: 61  NLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGK 120
           NLRWGNDNQ+ +QA S+S+NQGTNLED++KALATNT+SFQ +MKQQM+ LT AISK++GK
Sbjct: 166 NLRWGNDNQKYTQAPSTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTAISKMDGK 225

Query: 121 GKLPVQPDHANVSTISLRSGK 142
           GKLP QPDHANVS ISLRSGK
Sbjct: 226 GKLPAQPDHANVSAISLRSGK 246

[Close]

BLAST of PI0010861 vs. ExPASy TrEMBL
Match: A0A5D3CFE7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G00840 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 8.4e-57
Identity = 106/141 (75.18%), Postives = 123/141 (87.23%), Query Frame = 0


Query: 1   MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNL 60
           MTTLLTSFVQG   KV KCGVCGLVGHPNDKCP+++E+ N++R+YDPH NTYN+GWRD  
Sbjct: 186 MTTLLTSFVQGTPFKVTKCGVCGLVGHPNDKCPEVIEDINIVRRYDPHGNTYNLGWRDKP 245

Query: 61  NLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGK 120
           NLRWGND Q  +QA S+S+NQGTNLED++KAL TNT+SFQ EMKQQM+ LT AISK++GK
Sbjct: 246 NLRWGNDKQNHTQAPSTSSNQGTNLEDIIKALTTNTLSFQQEMKQQMTQLTTAISKMDGK 305

Query: 121 GKLPVQPDHANVSTISLRSGK 142
           GKLP QPDHANVS ISLRSGK
Sbjct: 306 GKLPAQPDHANVSAISLRSGK 326

[Close]

BLAST of PI0010861 vs. ExPASy TrEMBL
Match: A0A1S3CQU8 (uncharacterized protein LOC103503291 OS=Cucumis melo OX=3656 GN=LOC103503291 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.9e-56
Identity = 104/141 (73.76%), Postives = 125/141 (88.65%), Query Frame = 0


Query: 1   MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNL 60
           MTTLLTSFVQG ++KV KCGVCGLVG+PNDKCP ++E+ N++R+YDPH NTYN+GWRDN 
Sbjct: 56  MTTLLTSFVQGTALKVTKCGVCGLVGYPNDKCPKVIEDVNIVRRYDPHGNTYNLGWRDNP 115

Query: 61  NLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGK 120
           NLRWGNDNQ+ +QA  +S+NQGTNLED++KALATNT+SFQ +MKQQM+ LT  ISK++GK
Sbjct: 116 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTVISKMDGK 175

Query: 121 GKLPVQPDHANVSTISLRSGK 142
           GKLP QPDH NVS ISLRSGK
Sbjct: 176 GKLPAQPDHVNVSAISLRSGK 196

[Close]

BLAST of PI0010861 vs. ExPASy TrEMBL
Match: A0A5A7V0Q7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00020 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.5e-56
Identity = 107/141 (75.89%), Postives = 124/141 (87.94%), Query Frame = 0


Query: 1   MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNL 60
           MTTLLTSFVQG   KV KCGVCGLVGHPNDKC  ++E+ N++R+YDPHSNTYN GWRDN 
Sbjct: 169 MTTLLTSFVQGTPPKVTKCGVCGLVGHPNDKCLKVIEDVNIVRRYDPHSNTYNSGWRDNP 228

Query: 61  NLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGK 120
           NLRWGNDNQ+ +QA S+S+NQGTNLED++KAL TNT+SFQ EMKQQM+ LT AISK++GK
Sbjct: 229 NLRWGNDNQKHTQAPSTSSNQGTNLEDIIKALGTNTLSFQQEMKQQMTQLTTAISKMDGK 288

Query: 121 GKLPVQPDHANVSTISLRSGK 142
           GKLP QPD+ANVS ISLRSGK
Sbjct: 289 GKLPAQPDYANVSAISLRSGK 309

[Close]

BLAST of PI0010861 vs. ExPASy TrEMBL
Match: E5GBZ4 (Retrotransposon gag protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.5e-56
Identity = 106/141 (75.18%), Postives = 125/141 (88.65%), Query Frame = 0


Query: 1   MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNL 60
           MTTLLTSFVQG  +KV KCGVC LVGHPNDKCP+++E+ N++RKYDP+ NTYN GWRDN 
Sbjct: 57  MTTLLTSFVQGTPLKVTKCGVCRLVGHPNDKCPEVIEDVNIVRKYDPYGNTYNSGWRDNP 116

Query: 61  NLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGK 120
           NLRWGNDNQ+ +QA  +S+NQGTNLED++KALATNT+SFQ EMKQQM+ LT AISK++GK
Sbjct: 117 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGK 176

Query: 121 GKLPVQPDHANVSTISLRSGK 142
           GKLP QPD+ANVS ISLRSGK
Sbjct: 177 GKLPAQPDYANVSAISLRSGK 197

[Close]

BLAST of PI0010861 vs. NCBI nr
Match: TYK07549.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 236.5 bits (602), Expect = 1.4e-58
Identity = 110/141 (78.01%), Postives = 127/141 (90.07%), Query Frame = 0


Query: 1   MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNL 60
           MTTLLTSFVQG   KV KCGVCGLVGHPNDKCP ++E+ N++R+YDPHSNTYN GWRDNL
Sbjct: 106 MTTLLTSFVQGTPPKVTKCGVCGLVGHPNDKCPKVIEDVNIVRRYDPHSNTYNSGWRDNL 165

Query: 61  NLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGK 120
           NLRWGNDNQ+ +QA S+S+NQGTNLED++KALATNT+SFQ +MKQQM+ LT AISK++GK
Sbjct: 166 NLRWGNDNQKYTQAPSTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTAISKMDGK 225

Query: 121 GKLPVQPDHANVSTISLRSGK 142
           GKLP QPDHANVS ISLRSGK
Sbjct: 226 GKLPAQPDHANVSAISLRSGK 246

[Close]

BLAST of PI0010861 vs. NCBI nr
Match: TYK10613.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 229.6 bits (584), Expect = 1.7e-56
Identity = 106/141 (75.18%), Postives = 123/141 (87.23%), Query Frame = 0


Query: 1   MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNL 60
           MTTLLTSFVQG   KV KCGVCGLVGHPNDKCP+++E+ N++R+YDPH NTYN+GWRD  
Sbjct: 186 MTTLLTSFVQGTPFKVTKCGVCGLVGHPNDKCPEVIEDINIVRRYDPHGNTYNLGWRDKP 245

Query: 61  NLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGK 120
           NLRWGND Q  +QA S+S+NQGTNLED++KAL TNT+SFQ EMKQQM+ LT AISK++GK
Sbjct: 246 NLRWGNDKQNHTQAPSTSSNQGTNLEDIIKALTTNTLSFQQEMKQQMTQLTTAISKMDGK 305

Query: 121 GKLPVQPDHANVSTISLRSGK 142
           GKLP QPDHANVS ISLRSGK
Sbjct: 306 GKLPAQPDHANVSAISLRSGK 326

[Close]

BLAST of PI0010861 vs. NCBI nr
Match: XP_008465649.1 (PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo])

HSP 1 Score: 228.4 bits (581), Expect = 3.9e-56
Identity = 104/141 (73.76%), Postives = 125/141 (88.65%), Query Frame = 0


Query: 1   MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNL 60
           MTTLLTSFVQG ++KV KCGVCGLVG+PNDKCP ++E+ N++R+YDPH NTYN+GWRDN 
Sbjct: 56  MTTLLTSFVQGTALKVTKCGVCGLVGYPNDKCPKVIEDVNIVRRYDPHGNTYNLGWRDNP 115

Query: 61  NLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGK 120
           NLRWGNDNQ+ +QA  +S+NQGTNLED++KALATNT+SFQ +MKQQM+ LT  ISK++GK
Sbjct: 116 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTVISKMDGK 175

Query: 121 GKLPVQPDHANVSTISLRSGK 142
           GKLP QPDH NVS ISLRSGK
Sbjct: 176 GKLPAQPDHVNVSAISLRSGK 196

[Close]

BLAST of PI0010861 vs. NCBI nr
Match: KAA0061138.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 228.0 bits (580), Expect = 5.1e-56
Identity = 107/141 (75.89%), Postives = 124/141 (87.94%), Query Frame = 0


Query: 1   MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNL 60
           MTTLLTSFVQG   KV KCGVCGLVGHPNDKC  ++E+ N++R+YDPHSNTYN GWRDN 
Sbjct: 169 MTTLLTSFVQGTPPKVTKCGVCGLVGHPNDKCLKVIEDVNIVRRYDPHSNTYNSGWRDNP 228

Query: 61  NLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGK 120
           NLRWGNDNQ+ +QA S+S+NQGTNLED++KAL TNT+SFQ EMKQQM+ LT AISK++GK
Sbjct: 229 NLRWGNDNQKHTQAPSTSSNQGTNLEDIIKALGTNTLSFQQEMKQQMTQLTTAISKMDGK 288

Query: 121 GKLPVQPDHANVSTISLRSGK 142
           GKLP QPD+ANVS ISLRSGK
Sbjct: 289 GKLPAQPDYANVSAISLRSGK 309

[Close]

BLAST of PI0010861 vs. NCBI nr
Match: ADN33993.1 (retrotransposon gag protein [Cucumis melo subsp. melo])

HSP 1 Score: 228.0 bits (580), Expect = 5.1e-56
Identity = 106/141 (75.18%), Postives = 125/141 (88.65%), Query Frame = 0


Query: 1   MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNL 60
           MTTLLTSFVQG  +KV KCGVC LVGHPNDKCP+++E+ N++RKYDP+ NTYN GWRDN 
Sbjct: 57  MTTLLTSFVQGTPLKVTKCGVCRLVGHPNDKCPEVIEDVNIVRKYDPYGNTYNSGWRDNP 116

Query: 61  NLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGK 120
           NLRWGNDNQ+ +QA  +S+NQGTNLED++KALATNT+SFQ EMKQQM+ LT AISK++GK
Sbjct: 117 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGK 176

Query: 121 GKLPVQPDHANVSTISLRSGK 142
           GKLP QPD+ANVS ISLRSGK
Sbjct: 177 GKLPAQPDYANVSAISLRSGK 197

The following BLAST results are available for this feature:

BLAST of PI0010861 vs.


Match Name	E-value	Identity	Description

BLAST of PI0010861 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CB46	6.9e-59	78.01	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3CFE7	8.4e-57	75.18	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3CQU8	1.9e-56	73.76	uncharacterized protein LOC103503291 OS=Cucumis melo OX=3656 GN=LOC103503291 PE=...	[more]
A0A5A7V0Q7	2.5e-56	75.89	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
E5GBZ4	2.5e-56	75.18	Retrotransposon gag protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

BLAST of PI0010861 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK07549.1	1.4e-58	78.01	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
TYK10613.1	1.7e-56	75.18	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
XP_008465649.1	3.9e-56	73.76	PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo]	[more]
KAA0061138.1	5.1e-56	75.89	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
ADN33993.1	5.1e-56	75.18	retrotransposon gag protein [Cucumis melo subsp. melo]	[more]

BLAST of PI0010861 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 100..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..143
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0010861.1	PI0010861.1	mRNA