PI0010815 (gene) Melon (PI 482460) v1

Overview
NamePI0010815
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionDAR GTPase 3, chloroplastic
Locationchr09: 9773762 .. 9774438 (+)
RNA-Seq ExpressionPI0010815
SyntenyPI0010815
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCACTTTTTTACCTGCTGAAACGGTATGTTTCATAATTTTGATGAGTGACACTAGCTTTTGCGAATCTCCCAGGTATAGGATCACTTCAGAAGCGGTACAAAGTTGATGCGGGCGGTCAATGTGGTCACACGTACGTTAACATATGCTGACCAGTAGTTTTTCGTTTCTAGTTGATATTACTAATATTTATATGTGTGAAGCATCTAGATTTCTAGATGAGAAAAACTCTACCTCTCTTTACTCTCATTTCACCTTATTTCAACCTTGGGTTACGTTCTTTCTTTTGCCCCGTAGATGGTATCTATTTATGAAAAACGAGTGCATATTTGCAGTCTAAAATAATTCCTAATAAATTGCTGGTGACAGATTTGTTCAAAAGTTAGCCCTCCAATTATTCAACGGGGACAATCATCAAGCAGCTTTCCGCATCTTATCGGATTTTCGCAAAGGAAAGTTTGGTTGGACTGCTTTGGAGAGGCCTCCCAGATAATGCTGTTGGATGAATGGTTTGCTTGGAGGTCAGAATTTCAGTTTCTCACTCTTACACTAGTTGTATAAATTCTAAAGGCCACTCTCAAACTGAGAAAAGAAATTCATGATGCTTATATTGCTTTCGACTTGCGGACTTGTGAGAAGCTCAAAATTGAAGTCCTTGATCATAAATGGGAATGA

mRNA sequence

ATGTTCACTTTTTTACCTGCTGAAACGGTATGTTTCATAATTTTGATGAGTGACACTAGCTTTTGCGAATCTCCCAGATTTGTTCAAAAGTTAGCCCTCCAATTATTCAACGGGGACAATCATCAAGCAGCTTTCCGCATCTTATCGGATTTTCGCAAAGGAAAGTTTGAAATTCATGATGCTTATATTGCTTTCGACTTGCGGACTTGTGAGAAGCTCAAAATTGAAGTCCTTGATCATAAATGGGAATGA

Coding sequence (CDS)

ATGTTCACTTTTTTACCTGCTGAAACGGTATGTTTCATAATTTTGATGAGTGACACTAGCTTTTGCGAATCTCCCAGATTTGTTCAAAAGTTAGCCCTCCAATTATTCAACGGGGACAATCATCAAGCAGCTTTCCGCATCTTATCGGATTTTCGCAAAGGAAAGTTTGAAATTCATGATGCTTATATTGCTTTCGACTTGCGGACTTGTGAGAAGCTCAAAATTGAAGTCCTTGATCATAAATGGGAATGA

Protein sequence

MFTFLPAETVCFIILMSDTSFCESPRFVQKLALQLFNGDNHQAAFRILSDFRKGKFEIHDAYIAFDLRTCEKLKIEVLDHKWE
Homology
[Close]
BLAST of PI0010815 vs. ExPASy Swiss-Prot
Match: Q8H1F6 (DAR GTPase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DGP3 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 3.8e-06
Identity = 23/31 (74.19%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 26  RFVQKLALQLFNGDNHQAAFRILSDFRKGKF 57
           +FV+ L L LF GD+HQAAFRIL+DFRKGKF
Sbjct: 332 KFVKTLGLNLFGGDSHQAAFRILTDFRKGKF 362

[Close]
BLAST of PI0010815 vs. ExPASy TrEMBL
Match: A0A0A0KPR0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G308790 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 8.4e-25
Identity = 74/134 (55.22%), Postives = 75/134 (55.97%), Query Frame = 0 

Query: 1   MFTFLPAETVCFIILMSDTSFCESPR-------------------FVQKLALQLFNGDNH 60
           MFTFLPAE VCFIILM+D SF ESP                    FVQKLALQLFNGDNH
Sbjct: 1   MFTFLPAEMVCFIILMNDISFWESPGIETLQKRYKVDAGGQCGQIFVQKLALQLFNGDNH 60

Query: 61  QAAFRILSDFRKGKF---------------------------------EIHDAYIAFDLR 83
           QAAFRILSDFRKGKF                                 EIHDAYIAFDLR
Sbjct: 61  QAAFRILSDFRKGKFGWTALERPPRSEFELLALTLVVQILKATLKLRNEIHDAYIAFDLR 120

[Close]
BLAST of PI0010815 vs. ExPASy TrEMBL
Match: A0A5D3CV40 (DAR GTPase 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G001140 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.6e-07
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 27  FVQKLALQLFNGDNHQAAFRILSDFRKGKF 57
           FVQKLALQLFNGDNHQAAFRILSDFRKGKF
Sbjct: 330 FVQKLALQLFNGDNHQAAFRILSDFRKGKF 359

[Close]
BLAST of PI0010815 vs. ExPASy TrEMBL
Match: A0A1S3CIW2 (DAR GTPase 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501342 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.6e-07
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 27  FVQKLALQLFNGDNHQAAFRILSDFRKGKF 57
           FVQKLALQLFNGDNHQAAFRILSDFRKGKF
Sbjct: 330 FVQKLALQLFNGDNHQAAFRILSDFRKGKF 359

[Close]
BLAST of PI0010815 vs. ExPASy TrEMBL
Match: A0A6J1DPX2 (DAR GTPase 3, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022728 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.4e-06
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 27  FVQKLALQLFNGDNHQAAFRILSDFRKGKF 57
           FVQKLALQLFNGD+HQAAFRILSDFRKGKF
Sbjct: 331 FVQKLALQLFNGDSHQAAFRILSDFRKGKF 360

[Close]
BLAST of PI0010815 vs. ExPASy TrEMBL
Match: A0A6J1HS12 (DAR GTPase 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111466972 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.4e-06
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 27  FVQKLALQLFNGDNHQAAFRILSDFRKGKF 57
           FVQKLALQLFNGD+HQAAFRILSDFRKGKF
Sbjct: 330 FVQKLALQLFNGDSHQAAFRILSDFRKGKF 359

[Close]
BLAST of PI0010815 vs. NCBI nr
Match: XP_008463116.1 (PREDICTED: DAR GTPase 3, chloroplastic [Cucumis melo])

HSP 1 Score: 63.9 bits (154), Expect = 7.3e-07
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 27  FVQKLALQLFNGDNHQAAFRILSDFRKGKF 57
           FVQKLALQLFNGDNHQAAFRILSDFRKGKF
Sbjct: 330 FVQKLALQLFNGDNHQAAFRILSDFRKGKF 359

[Close]
BLAST of PI0010815 vs. NCBI nr
Match: XP_011655122.1 (DAR GTPase 3, chloroplastic [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 7.3e-07
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 27  FVQKLALQLFNGDNHQAAFRILSDFRKGKF 57
           FVQKLALQLFNGDNHQAAFRILSDFRKGKF
Sbjct: 330 FVQKLALQLFNGDNHQAAFRILSDFRKGKF 359

[Close]
BLAST of PI0010815 vs. NCBI nr
Match: KAA0066191.1 (DAR GTPase 3 [Cucumis melo var. makuwa] >TYK15230.1 DAR GTPase 3 [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 7.3e-07
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 27  FVQKLALQLFNGDNHQAAFRILSDFRKGKF 57
           FVQKLALQLFNGDNHQAAFRILSDFRKGKF
Sbjct: 330 FVQKLALQLFNGDNHQAAFRILSDFRKGKF 359

[Close]
BLAST of PI0010815 vs. NCBI nr
Match: XP_022963690.1 (DAR GTPase 3, chloroplastic [Cucurbita moschata])

HSP 1 Score: 62.0 bits (149), Expect = 2.8e-06
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 27  FVQKLALQLFNGDNHQAAFRILSDFRKGKF 57
           FVQKLALQLFNGD+HQAAFRILSDFRKGKF
Sbjct: 330 FVQKLALQLFNGDSHQAAFRILSDFRKGKF 359

[Close]
BLAST of PI0010815 vs. NCBI nr
Match: XP_022155646.1 (DAR GTPase 3, chloroplastic isoform X1 [Momordica charantia] >XP_022155647.1 DAR GTPase 3, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 62.0 bits (149), Expect = 2.8e-06
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 27  FVQKLALQLFNGDNHQAAFRILSDFRKGKF 57
           FVQKLALQLFNGD+HQAAFRILSDFRKGKF
Sbjct: 331 FVQKLALQLFNGDSHQAAFRILSDFRKGKF 360

[Close]
BLAST of PI0010815 vs. TAIR 10
Match: AT4G02790.1 (GTP-binding family protein )

HSP 1 Score: 52.0 bits (123), Expect = 2.7e-07
Identity = 23/31 (74.19%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 26  RFVQKLALQLFNGDNHQAAFRILSDFRKGKF 57
           +FV+ L L LF GD+HQAAFRIL+DFRKGKF
Sbjct: 332 KFVKTLGLNLFGGDSHQAAFRILTDFRKGKF 362

The following BLAST results are available for this feature:
BLAST of PI0010815 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8H1F63.8e-0674.19DAR GTPase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DGP3 PE=2 SV=1[more]
BLAST of PI0010815 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPR08.4e-2555.22Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G308790 PE=4 SV=1[more]
A0A5D3CV403.6e-07100.00DAR GTPase 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G001140 ... [more]
A0A1S3CIW23.6e-07100.00DAR GTPase 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501342 PE=4 SV=1[more]
A0A6J1DPX21.4e-0696.67DAR GTPase 3, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC1110... [more]
A0A6J1HS121.4e-0696.67DAR GTPase 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111466972 PE=4 SV=... [more]
BLAST of PI0010815 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008463116.17.3e-07100.00PREDICTED: DAR GTPase 3, chloroplastic [Cucumis melo][more]
XP_011655122.17.3e-07100.00DAR GTPase 3, chloroplastic [Cucumis sativus][more]
KAA0066191.17.3e-07100.00DAR GTPase 3 [Cucumis melo var. makuwa] >TYK15230.1 DAR GTPase 3 [Cucumis melo v... [more]
XP_022963690.12.8e-0696.67DAR GTPase 3, chloroplastic [Cucurbita moschata][more]
XP_022155646.12.8e-0696.67DAR GTPase 3, chloroplastic isoform X1 [Momordica charantia] >XP_022155647.1 DAR... [more]
BLAST of PI0010815 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G02790.12.7e-0774.19GTP-binding family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0010815.1PI0010815.1mRNA