Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTACTCTACTAACCTCTTTTGTGCAAGGTGGAAATGTGAAAGTTGCCAAATGTGGAGTATGTGGACTAATAGGACATCCTAATGATAAGTGCCCTGACCTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAATACTTACAATGCCGGTTGGAGAGACAATCCAAACCTTAGATGGGGAAACAATAATCAACAACCCACGCAAGCAACTCCTTCTTCAAACAATCAAGGTACAAATTTGGAGGATTTGGTAAAAGCTCTTGCCAGTAATACAATTTCTTTTCAAAATGAAATGAAGCAACAAATGTCTCAATTAACAAATGCAATAAGCAAGTTAGAAGGCAAAGGTAAGCTGCCAGCTCAACCTGATCATGCAAATGTAAGTGTCATCTCACTTAGAAGTGGTAAAATTCTGCAACCTCCTCCAAGTGAAGAAAAGGTACCTTCTAACCCTGACCTTCTAATTGATGAAAACAAGAAAAAGGAAGAAAATAAAGAAAGCAATGCCTCTTCTCCTTCTTTAAAAGGTAAAAATAAAATTTTGATTTTACCCCTTTTGTTCCTAACGCTCCTTTTCCTTCCAGATTAATTCCTAA
mRNA sequence
ATGACTACTCTACTAACCTCTTTTGTGCAAGGTGGAAATGTGAAAGTTGCCAAATGTGGAGTATGTGGACTAATAGGACATCCTAATGATAAGTGCCCTGACCTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAATACTTACAATGCCGGTTGGAGAGACAATCCAAACCTTAGATGGGGAAACAATAATCAACAACCCACGCAAGCAACTCCTTCTTCAAACAATCAAGGTACAAATTTGGAGGATTTGGTAAAAGCTCTTGCCAGTAATACAATTTCTTTTCAAAATGAAATGAAGCAACAAATGTCTCAATTAACAAATGCAATAAGCAAGTTAGAAGGCAAAGGTAAGCTGCCAGCTCAACCTGATCATGCAAATGTAAGTGTCATCTCACTTAGAAGTGGTAAAATTCTGCAACCTCCTCCAAGTGAAGAAAAGATTAATTCCTAA
Coding sequence (CDS)
ATGACTACTCTACTAACCTCTTTTGTGCAAGGTGGAAATGTGAAAGTTGCCAAATGTGGAGTATGTGGACTAATAGGACATCCTAATGATAAGTGCCCTGACCTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAATACTTACAATGCCGGTTGGAGAGACAATCCAAACCTTAGATGGGGAAACAATAATCAACAACCCACGCAAGCAACTCCTTCTTCAAACAATCAAGGTACAAATTTGGAGGATTTGGTAAAAGCTCTTGCCAGTAATACAATTTCTTTTCAAAATGAAATGAAGCAACAAATGTCTCAATTAACAAATGCAATAAGCAAGTTAGAAGGCAAAGGTAAGCTGCCAGCTCAACCTGATCATGCAAATGTAAGTGTCATCTCACTTAGAAGTGGTAAAATTCTGCAACCTCCTCCAAGTGAAGAAAAGATTAATTCCTAA
Protein sequence
MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGTNLEDLVKALASNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSVISLRSGKILQPPPSEEKINS
Homology
BLAST of PI0010710 vs. ExPASy TrEMBL
Match:
E5GBZ4 (Retrotransposon gag protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)
HSP 1 Score: 246.1 bits (627), Expect = 9.4e-62
Identity = 114/151 (75.50%), Postives = 138/151 (91.39%), Query Frame = 0
Query: 1 MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNP 60
MTTLLTSFVQG +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+GNTYN+GWRDNP
Sbjct: 57 MTTLLTSFVQGTPLKVTKCGVCRLVGHPNDKCPEVIEDVNIVRKYDPYGNTYNSGWRDNP 116
Query: 61 NLRWGNNNQQPTQATPSSNNQGTNLEDLVKALASNTISFQNEMKQQMSQLTNAISKLEGK 120
NLRWGN+NQ+ TQA P+S+NQGTNLED++KALA+NT+SFQ EMKQQM+QLT AISK++GK
Sbjct: 117 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGK 176
Query: 121 GKLPAQPDHANVSVISLRSGKILQPPPSEEK 152
GKLPAQPD+ANVS ISLRSGKIL P ++EK
Sbjct: 177 GKLPAQPDYANVSAISLRSGKILDTPTTKEK 207
BLAST of PI0010710 vs. ExPASy TrEMBL
Match:
A0A1S3CQU8 (uncharacterized protein LOC103503291 OS=Cucumis melo OX=3656 GN=LOC103503291 PE=4 SV=1)
HSP 1 Score: 243.8 bits (621), Expect = 4.7e-61
Identity = 112/151 (74.17%), Postives = 135/151 (89.40%), Query Frame = 0
Query: 1 MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNP 60
MTTLLTSFVQG +KV KCGVCGL+G+PNDKCP ++E+ N++R+YDPHGNTYN GWRDNP
Sbjct: 56 MTTLLTSFVQGTALKVTKCGVCGLVGYPNDKCPKVIEDVNIVRRYDPHGNTYNLGWRDNP 115
Query: 61 NLRWGNNNQQPTQATPSSNNQGTNLEDLVKALASNTISFQNEMKQQMSQLTNAISKLEGK 120
NLRWGN+NQ+ TQA P+S+NQGTNLED++KALA+NT+SFQ +MKQQM+QLT ISK++GK
Sbjct: 116 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTVISKMDGK 175
Query: 121 GKLPAQPDHANVSVISLRSGKILQPPPSEEK 152
GKLPAQPDH NVS ISLRSGKIL P ++EK
Sbjct: 176 GKLPAQPDHVNVSAISLRSGKILDTPTTKEK 206
BLAST of PI0010710 vs. ExPASy TrEMBL
Match:
A0A5D3DCG3 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold860G00100 PE=4 SV=1)
HSP 1 Score: 243.4 bits (620), Expect = 6.1e-61
Identity = 113/151 (74.83%), Postives = 136/151 (90.07%), Query Frame = 0
Query: 1 MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNP 60
MT LLTSFVQG +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNP
Sbjct: 1 MTILLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNP 60
Query: 61 NLRWGNNNQQPTQATPSSNNQGTNLEDLVKALASNTISFQNEMKQQMSQLTNAISKLEGK 120
NLRWGN+NQ+ TQA P+S+NQGTNLED++KALA+NT+SFQ EMKQQM+QLT ISK++GK
Sbjct: 61 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKMDGK 120
Query: 121 GKLPAQPDHANVSVISLRSGKILQPPPSEEK 152
GKL AQPDHANVSVISLRS KIL P ++EK
Sbjct: 121 GKLLAQPDHANVSVISLRSDKILDTPTTKEK 151
BLAST of PI0010710 vs. ExPASy TrEMBL
Match:
A0A1S4E3R2 (uncharacterized protein LOC107991910 OS=Cucumis melo OX=3656 GN=LOC107991910 PE=4 SV=1)
HSP 1 Score: 243.4 bits (620), Expect = 6.1e-61
Identity = 113/151 (74.83%), Postives = 136/151 (90.07%), Query Frame = 0
Query: 1 MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNP 60
MT LLTSFVQG +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNP
Sbjct: 1 MTILLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNP 60
Query: 61 NLRWGNNNQQPTQATPSSNNQGTNLEDLVKALASNTISFQNEMKQQMSQLTNAISKLEGK 120
NLRWGN+NQ+ TQA P+S+NQGTNLED++KALA+NT+SFQ EMKQQM+QLT ISK++GK
Sbjct: 61 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKMDGK 120
Query: 121 GKLPAQPDHANVSVISLRSGKILQPPPSEEK 152
GKL AQPDHANVSVISLRS KIL P ++EK
Sbjct: 121 GKLLAQPDHANVSVISLRSDKILDTPTTKEK 151
BLAST of PI0010710 vs. ExPASy TrEMBL
Match:
A0A5D3CFE7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G00840 PE=4 SV=1)
HSP 1 Score: 241.1 bits (614), Expect = 3.0e-60
Identity = 112/151 (74.17%), Postives = 132/151 (87.42%), Query Frame = 0
Query: 1 MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNP 60
MTTLLTSFVQG KV KCGVCGL+GHPNDKCP+++E+ N++R+YDPHGNTYN GWRD P
Sbjct: 186 MTTLLTSFVQGTPFKVTKCGVCGLVGHPNDKCPEVIEDINIVRRYDPHGNTYNLGWRDKP 245
Query: 61 NLRWGNNNQQPTQATPSSNNQGTNLEDLVKALASNTISFQNEMKQQMSQLTNAISKLEGK 120
NLRWGN+ Q TQA +S+NQGTNLED++KAL +NT+SFQ EMKQQM+QLT AISK++GK
Sbjct: 246 NLRWGNDKQNHTQAPSTSSNQGTNLEDIIKALTTNTLSFQQEMKQQMTQLTTAISKMDGK 305
Query: 121 GKLPAQPDHANVSVISLRSGKILQPPPSEEK 152
GKLPAQPDHANVS ISLRSGKIL P ++EK
Sbjct: 306 GKLPAQPDHANVSAISLRSGKILDTPTTKEK 336
BLAST of PI0010710 vs. NCBI nr
Match:
ADN33993.1 (retrotransposon gag protein [Cucumis melo subsp. melo])
HSP 1 Score: 246.1 bits (627), Expect = 1.9e-61
Identity = 114/151 (75.50%), Postives = 138/151 (91.39%), Query Frame = 0
Query: 1 MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNP 60
MTTLLTSFVQG +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+GNTYN+GWRDNP
Sbjct: 57 MTTLLTSFVQGTPLKVTKCGVCRLVGHPNDKCPEVIEDVNIVRKYDPYGNTYNSGWRDNP 116
Query: 61 NLRWGNNNQQPTQATPSSNNQGTNLEDLVKALASNTISFQNEMKQQMSQLTNAISKLEGK 120
NLRWGN+NQ+ TQA P+S+NQGTNLED++KALA+NT+SFQ EMKQQM+QLT AISK++GK
Sbjct: 117 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGK 176
Query: 121 GKLPAQPDHANVSVISLRSGKILQPPPSEEK 152
GKLPAQPD+ANVS ISLRSGKIL P ++EK
Sbjct: 177 GKLPAQPDYANVSAISLRSGKILDTPTTKEK 207
BLAST of PI0010710 vs. NCBI nr
Match:
XP_008465649.1 (PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo])
HSP 1 Score: 243.8 bits (621), Expect = 9.6e-61
Identity = 112/151 (74.17%), Postives = 135/151 (89.40%), Query Frame = 0
Query: 1 MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNP 60
MTTLLTSFVQG +KV KCGVCGL+G+PNDKCP ++E+ N++R+YDPHGNTYN GWRDNP
Sbjct: 56 MTTLLTSFVQGTALKVTKCGVCGLVGYPNDKCPKVIEDVNIVRRYDPHGNTYNLGWRDNP 115
Query: 61 NLRWGNNNQQPTQATPSSNNQGTNLEDLVKALASNTISFQNEMKQQMSQLTNAISKLEGK 120
NLRWGN+NQ+ TQA P+S+NQGTNLED++KALA+NT+SFQ +MKQQM+QLT ISK++GK
Sbjct: 116 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTVISKMDGK 175
Query: 121 GKLPAQPDHANVSVISLRSGKILQPPPSEEK 152
GKLPAQPDH NVS ISLRSGKIL P ++EK
Sbjct: 176 GKLPAQPDHVNVSAISLRSGKILDTPTTKEK 206
BLAST of PI0010710 vs. NCBI nr
Match:
XP_016902871.1 (PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo])
HSP 1 Score: 243.4 bits (620), Expect = 1.3e-60
Identity = 113/151 (74.83%), Postives = 136/151 (90.07%), Query Frame = 0
Query: 1 MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNP 60
MT LLTSFVQG +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNP
Sbjct: 1 MTILLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNP 60
Query: 61 NLRWGNNNQQPTQATPSSNNQGTNLEDLVKALASNTISFQNEMKQQMSQLTNAISKLEGK 120
NLRWGN+NQ+ TQA P+S+NQGTNLED++KALA+NT+SFQ EMKQQM+QLT ISK++GK
Sbjct: 61 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKMDGK 120
Query: 121 GKLPAQPDHANVSVISLRSGKILQPPPSEEK 152
GKL AQPDHANVSVISLRS KIL P ++EK
Sbjct: 121 GKLLAQPDHANVSVISLRSDKILDTPTTKEK 151
BLAST of PI0010710 vs. NCBI nr
Match:
KAA0051761.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK21361.1 retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 243.4 bits (620), Expect = 1.3e-60
Identity = 113/151 (74.83%), Postives = 136/151 (90.07%), Query Frame = 0
Query: 1 MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNP 60
MT LLTSFVQG +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNP
Sbjct: 1 MTILLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNP 60
Query: 61 NLRWGNNNQQPTQATPSSNNQGTNLEDLVKALASNTISFQNEMKQQMSQLTNAISKLEGK 120
NLRWGN+NQ+ TQA P+S+NQGTNLED++KALA+NT+SFQ EMKQQM+QLT ISK++GK
Sbjct: 61 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKMDGK 120
Query: 121 GKLPAQPDHANVSVISLRSGKILQPPPSEEK 152
GKL AQPDHANVSVISLRS KIL P ++EK
Sbjct: 121 GKLLAQPDHANVSVISLRSDKILDTPTTKEK 151
BLAST of PI0010710 vs. NCBI nr
Match:
KAA0038454.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 241.1 bits (614), Expect = 6.2e-60
Identity = 113/151 (74.83%), Postives = 135/151 (89.40%), Query Frame = 0
Query: 1 MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNP 60
MT LLTSFVQG +KV KCGVC L+GH NDKCP+++E+ N++RKYDP+GNTYN+GWRDNP
Sbjct: 57 MTILLTSFVQGTPLKVTKCGVCRLVGHSNDKCPEVIEDVNIVRKYDPYGNTYNSGWRDNP 116
Query: 61 NLRWGNNNQQPTQATPSSNNQGTNLEDLVKALASNTISFQNEMKQQMSQLTNAISKLEGK 120
NLRWGN+NQ+ TQA P+S+NQGTNLED++KALA+NT SFQ EMKQQM+QLT AISK++GK
Sbjct: 117 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTHSFQQEMKQQMTQLTTAISKMDGK 176
Query: 121 GKLPAQPDHANVSVISLRSGKILQPPPSEEK 152
GKLPAQPDHANVS ISLRSGKIL P ++EK
Sbjct: 177 GKLPAQPDHANVSAISLRSGKILNTPTTKEK 207
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
E5GBZ4 | 9.4e-62 | 75.50 | Retrotransposon gag protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1 | [more] |
A0A1S3CQU8 | 4.7e-61 | 74.17 | uncharacterized protein LOC103503291 OS=Cucumis melo OX=3656 GN=LOC103503291 PE=... | [more] |
A0A5D3DCG3 | 6.1e-61 | 74.83 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
A0A1S4E3R2 | 6.1e-61 | 74.83 | uncharacterized protein LOC107991910 OS=Cucumis melo OX=3656 GN=LOC107991910 PE=... | [more] |
A0A5D3CFE7 | 3.0e-60 | 74.17 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
Match Name | E-value | Identity | Description | |
ADN33993.1 | 1.9e-61 | 75.50 | retrotransposon gag protein [Cucumis melo subsp. melo] | [more] |
XP_008465649.1 | 9.6e-61 | 74.17 | PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo] | [more] |
XP_016902871.1 | 1.3e-60 | 74.83 | PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo] | [more] |
KAA0051761.1 | 1.3e-60 | 74.83 | retrotransposon gag protein [Cucumis melo var. makuwa] >TYK21361.1 retrotranspos... | [more] |
KAA0038454.1 | 6.2e-60 | 74.83 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |