PI0010212 (gene) Melon (PI 482460) v1

Overview


Name	PI0010212
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Reverse transcriptase domain-containing protein
Location	chr10: 2874268 .. 2875501 (-)
RNA-Seq Expression	PI0010212
Synteny	PI0010212

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTACAACGAAACAGATGGATAAGGCCCACATAGACCGATTGGTAGAGATCGAAGAGCAGATGTTCTACCTGGTGGAAATTCCAGTCACCGTGCACTTCTTGAAAGGTTAAATTGAAGAAATTTTTGAGAAAGTTGATGCTACTGATGCAGTGACCGGTCGCCTCGACAAATTACTTATAAACGAGTTGTTGACAAGAGTCGACACTCTAGAGGCAAGGGCTGCAAGAACTGGTAACTACGAGCGTGGGGACAGTTCAACGGGCTCTGTTGCCCACATAGAGGAACGGGTTAGCGAGCTAGATAGCTCCCAAAAGTTGATCGTCGAGATGATAAATGGCATGTCAGAGGATTTTCGTGCCGCTCTTGACGTCGTCAGGAATGAGATTGCAGACGTGAGCGCGAGGGTGAACCTCACGATGCGAGCTATGGCAAACCAAGCTCCAACTGGAGGAGCTATACAAGTTAACAGGGTGAAAATCCCCGAACCCAAACCCTTCTGTGGGGCGCAAAAGCCTTAGAGAACTTTATATTTGACCTCGAACAATACTTTCGGGCCACAAACACTGTTGCGGAGGAAGCGAAAGTGACACTAGCAACGATGCACCTAGCCGAGGATGCAAAATTGTGGTGGCGGTCCCAGTATGTCGAGATCCAAGAAGGATGATGTACGATAGACACCTGAGACAGTTTAAAGAAAGAACTACGCTCACAGTTCTTCCTCGAGAATGTTAAAATCCTTGCTCGATGGAAGTTACGTGAATTAAAACACACACGGTAGCATTCGGGATTATGTGAAGCAGTTTACGGGATTGATGTTAGACATACGCGATATGTCCGAGAAAGACAAAGTTTTCTGTTTTGTCGAAGGCCTTAAACCATGGGCAAAAACCAAGCTATACGAACAGAAGGTCCAAGAACTCTCGTCGGCATACATAGTGGCAGAGCGACTATTTGACCTGTCCAGTGACTCTCAAGATGCGAGACGTCATTCAAGTTCCTCATTTGGAGGAAATAAGAACAATCATGCAAGTTTTCCAAAGGCCGAAGGAGGAGATAAACGATCTAGTGGTGATCGTAGGCCCTTTCAACCAAACATCGGGAACACGGGGCGAGGATAGAACCACCAAAACTCTCACAATCGTCCCCCTTCCTGTTTCATATGTAAGGGGCCGCACATGGCGAGAGAATGTCCGAATCGAACCACCTTTAACGCCTTTCAGGCTGCCTTAG

mRNA sequence

ATGTCTACAACGAAACAGATGGATAAGGCCCACATAGACCGATTGGTAGAGATCGAAGAGCAGATGTTCTACCTGGTGGAAATTCCAGTCACCGTGCACTTCTTGAAAGAAATTTTTGAGAAAGTTGATGCTACTGATGCAGTGACCGGTCGCCTCGACAAATTACTTATAAACGAGTTGTTGACAAGAGTCGACACTCTAGAGGCAAGGGCTGCAAGAACTGGTAACTACGAGCGTGGGGACAGTTCAACGGGCTCTGTTGCCCACATAGAGGAACGGGTTAGCGAGCTAGATAGCTCCCAAAAGTTGATCGTCGAGATGATAAATGGCATGTCAGAGGATTTTCGTGCCGCTCTTGACGTCGTCAGGAATGAGATTGCAGACGTGAGCGCGAGGTGGCAGAGCGACTATTTGACCTGTCCAGTGACTCTCAAGATGCGAGACGTCATTCAAGTTCCTCATTTGGAGGAAATAAGAACAATCATGCAAGTTTTCCAAAGGCCGAAGGAGGAGATAAACGATCTAGTGGTGATCGTAGGCCCTTTCAACCAAACATCGGGAACACGGGGCGAGGATAGAACCACCAAAACTCTCACAATCGTCCCCCTTCCTGTTTCATATGTAAGGGGCCGCACATGGCGAGAGAATGTCCGAATCGAACCACCTTTAACGCCTTTCAGGCTGCCTTAG

Coding sequence (CDS)

ATGTCTACAACGAAACAGATGGATAAGGCCCACATAGACCGATTGGTAGAGATCGAAGAGCAGATGTTCTACCTGGTGGAAATTCCAGTCACCGTGCACTTCTTGAAAGAAATTTTTGAGAAAGTTGATGCTACTGATGCAGTGACCGGTCGCCTCGACAAATTACTTATAAACGAGTTGTTGACAAGAGTCGACACTCTAGAGGCAAGGGCTGCAAGAACTGGTAACTACGAGCGTGGGGACAGTTCAACGGGCTCTGTTGCCCACATAGAGGAACGGGTTAGCGAGCTAGATAGCTCCCAAAAGTTGATCGTCGAGATGATAAATGGCATGTCAGAGGATTTTCGTGCCGCTCTTGACGTCGTCAGGAATGAGATTGCAGACGTGAGCGCGAGGTGGCAGAGCGACTATTTGACCTGTCCAGTGACTCTCAAGATGCGAGACGTCATTCAAGTTCCTCATTTGGAGGAAATAAGAACAATCATGCAAGTTTTCCAAAGGCCGAAGGAGGAGATAAACGATCTAGTGGTGATCGTAGGCCCTTTCAACCAAACATCGGGAACACGGGGCGAGGATAGAACCACCAAAACTCTCACAATCGTCCCCCTTCCTGTTTCATATGTAAGGGGCCGCACATGGCGAGAGAATGTCCGAATCGAACCACCTTTAACGCCTTTCAGGCTGCCTTAG

Protein sequence

MSTTKQMDKAHIDRLVEIEEQMFYLVEIPVTVHFLKEIFEKVDATDAVTGRLDKLLINELLTRVDTLEARAARTGNYERGDSSTGSVAHIEERVSELDSSQKLIVEMINGMSEDFRAALDVVRNEIADVSARWQSDYLTCPVTLKMRDVIQVPHLEEIRTIMQVFQRPKEEINDLVVIVGPFNQTSGTRGEDRTTKTLTIVPLPVSYVRGRTWRENVRIEPPLTPFRLP

Homology

[Close]

BLAST of PI0010212 vs. ExPASy TrEMBL
Match: A0A5D3DUL1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00940 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 5.2e-40
Identity = 101/166 (60.84%), Postives = 116/166 (69.88%), Query Frame = 0


Query: 1   MSTTKQMDKAHIDRLVEIEEQMFYLVEIPVTVHFLK----EIFEKVDATDAVTGRLDKLL 60
           MSTTKQ+ K   DRLVE++EQM YLVE+  ++HFLK    EI+EK DA DAVT RLD L 
Sbjct: 1   MSTTKQLGKHQADRLVELKEQMHYLVEVSDSIHFLKSRLEEIYEKADAIDAVTSRLDGLP 60

Query: 61  INELLTRVDTLEARAARTGNYERGDSSTGSVAHIEERVSELDSSQKLIVEMINGMSEDFR 120
           I ELLTRVDTLE +  RTGNYE GDSST  V+HIEERV ELDSSQK I+EMIN MS+DFR
Sbjct: 61  IQELLTRVDTLETKVVRTGNYEHGDSSTSYVSHIEERVVELDSSQKSIMEMINSMSKDFR 120

Query: 121 AALDVVRNEIADVSARWQSDY-----LTCPVTLKMRDVIQVPHLEE 158
           A LDVVRNEIAD    +  D       T  VT + +  +   HL E
Sbjct: 121 ATLDVVRNEIADALENFIFDLEQYFKATSTVTEEAKVTLATMHLSE 166

[Close]

BLAST of PI0010212 vs. ExPASy TrEMBL
Match: A0A5A7UCI7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1510G00050 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 8.8e-40
Identity = 93/136 (68.38%), Postives = 109/136 (80.15%), Query Frame = 0


Query: 1   MSTTKQMDKAHIDRLVEIEEQMFYLVEIPVTVHF----LKEIFEKVDATDAVTGRLDKLL 60
           MS+   + KA  DRLVE+EEQM YLVE+P+++ F    L+EI EK+D  DAV GR+  LL
Sbjct: 1   MSSANPLGKAQRDRLVELEEQMLYLVEVPISIRFLESRLEEIAEKIDMIDAVAGRVKGLL 60

Query: 61  INELLTRVDTLEARAARTGNYERGDSSTGSVAHIEERVSELDSSQKLIVEMINGMSEDFR 120
           I ELL RVDTLE    RTG++ERGDSSTGSVAHIEERV ELDSSQK ++EMINGMSE+FR
Sbjct: 61  IQELLARVDTLEGTVGRTGSHERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSENFR 120

Query: 121 AALDVVRNEIADVSAR 133
           A LDVVRNEIADV+AR
Sbjct: 121 ATLDVVRNEIADVNAR 136

[Close]

BLAST of PI0010212 vs. ExPASy TrEMBL
Match: A0A5A7TEV3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G001730 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 5.3e-37
Identity = 100/196 (51.02%), Postives = 124/196 (63.27%), Query Frame = 0


Query: 1   MSTTKQMDKAHIDRLVEIEEQMFYLVEIPVTVHF----LKEIFEKVDATDAVTGRLDKLL 60
           MS+     KA  DRLVE+EEQM YLVE+P ++HF    L+EI EK D  DA+ GR++ L 
Sbjct: 1   MSSVNPSGKAQRDRLVELEEQMLYLVEVPDSIHFLESHLEEIAEKTDMIDAIAGRVEGLP 60

Query: 61  INELLTRVDTLEARAARTGNYERGDSSTGSVAHIEERVSELDSSQKLIVEMINGMSEDFR 120
           I +LL RVDTLE    RTG++ERGDSSTGSVAHIEERV ELDSSQK ++EMIN MSEDF 
Sbjct: 61  IQKLLARVDTLEGTVGRTGSHERGDSSTGSVAHIEERVQELDSSQKKLLEMINYMSEDFL 120

Query: 121 AALDVVRNEIADVSARWQ-----------------SDYLTCPVTLKMRDVIQVPHLEEIR 176
           A LDVVRNEIADV+AR                    D LTC    +   + ++ H+  IR
Sbjct: 121 ATLDVVRNEIADVNARLSLTMRAMANLGRSTICGGPDLLTC----RRDKLCELKHIGSIR 180

[Close]

BLAST of PI0010212 vs. ExPASy TrEMBL
Match: A0A5A7SKW3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G005100 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 7.0e-37
Identity = 91/138 (65.94%), Postives = 107/138 (77.54%), Query Frame = 0


Query: 1   MSTTKQMDKAHIDRLVEIEEQMFYLVEIPVTVHF----LKEIFEKVDATDAVTGRLDKLL 60
           MS++    KA  DRLVE+EEQM YLVE+P ++ +    L+EIF+K +  DAVTGR++   
Sbjct: 1   MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEIFQKTNTIDAVTGRVEGFP 60

Query: 61  INELLTRVDTLE--ARAARTGNYERGDSSTGSVAHIEERVSELDSSQKLIVEMINGMSED 120
           I EL+TRVD LE      RT NYERGDSSTGSVAHIEERV ELDSSQK ++EMINGMSED
Sbjct: 61  IQELMTRVDALETTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSED 120

Query: 121 FRAALDVVRNEIADVSAR 133
           FRA LDVVRNEIADV+AR
Sbjct: 121 FRATLDVVRNEIADVNAR 138

[Close]

BLAST of PI0010212 vs. ExPASy TrEMBL
Match: A0A5A7TP22 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G00510 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 7.0e-37
Identity = 90/136 (66.18%), Postives = 105/136 (77.21%), Query Frame = 0


Query: 1   MSTTKQMDKAHIDRLVEIEEQMFYLVEIPVTVHF----LKEIFEKVDATDAVTGRLDKLL 60
           MS+     KA  DRL E+EEQM YL+E+P ++ F    L++I EK D  DAV GR++ LL
Sbjct: 1   MSSANPSGKAQRDRLKELEEQMLYLIEVPDSIRFLESRLEKIAEKTDMIDAVAGRVEGLL 60

Query: 61  INELLTRVDTLEARAARTGNYERGDSSTGSVAHIEERVSELDSSQKLIVEMINGMSEDFR 120
           I ELL RVDTLE    RTG++ERGDSSTGSVAHIEERV ELDSSQK ++EMIN MSEDFR
Sbjct: 61  IQELLARVDTLEETVGRTGSHERGDSSTGSVAHIEERVQELDSSQKTLLEMINVMSEDFR 120

Query: 121 AALDVVRNEIADVSAR 133
           A LDVVRNEIADV+AR
Sbjct: 121 ATLDVVRNEIADVNAR 136

[Close]

BLAST of PI0010212 vs. NCBI nr
Match: KAA0062476.1 (uncharacterized protein E6C27_scaffold130G00660 [Cucumis melo var. makuwa] >TYK27406.1 uncharacterized protein E5676_scaffold325G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 174.5 bits (441), Expect = 1.1e-39
Identity = 101/166 (60.84%), Postives = 116/166 (69.88%), Query Frame = 0


Query: 1   MSTTKQMDKAHIDRLVEIEEQMFYLVEIPVTVHFLK----EIFEKVDATDAVTGRLDKLL 60
           MSTTKQ+ K   DRLVE++EQM YLVE+  ++HFLK    EI+EK DA DAVT RLD L 
Sbjct: 1   MSTTKQLGKHQADRLVELKEQMHYLVEVSDSIHFLKSRLEEIYEKADAIDAVTSRLDGLP 60

Query: 61  INELLTRVDTLEARAARTGNYERGDSSTGSVAHIEERVSELDSSQKLIVEMINGMSEDFR 120
           I ELLTRVDTLE +  RTGNYE GDSST  V+HIEERV ELDSSQK I+EMIN MS+DFR
Sbjct: 61  IQELLTRVDTLETKVVRTGNYEHGDSSTSYVSHIEERVVELDSSQKSIMEMINSMSKDFR 120

Query: 121 AALDVVRNEIADVSARWQSDY-----LTCPVTLKMRDVIQVPHLEE 158
           A LDVVRNEIAD    +  D       T  VT + +  +   HL E
Sbjct: 121 ATLDVVRNEIADALENFIFDLEQYFKATSTVTEEAKVTLATMHLSE 166

[Close]

BLAST of PI0010212 vs. NCBI nr
Match: KAA0051251.1 (uncharacterized protein E6C27_scaffold2143G00070 [Cucumis melo var. makuwa] >TYK28094.1 uncharacterized protein E5676_scaffold1510G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 173.7 bits (439), Expect = 1.8e-39
Identity = 93/136 (68.38%), Postives = 109/136 (80.15%), Query Frame = 0


Query: 1   MSTTKQMDKAHIDRLVEIEEQMFYLVEIPVTVHF----LKEIFEKVDATDAVTGRLDKLL 60
           MS+   + KA  DRLVE+EEQM YLVE+P+++ F    L+EI EK+D  DAV GR+  LL
Sbjct: 1   MSSANPLGKAQRDRLVELEEQMLYLVEVPISIRFLESRLEEIAEKIDMIDAVAGRVKGLL 60

Query: 61  INELLTRVDTLEARAARTGNYERGDSSTGSVAHIEERVSELDSSQKLIVEMINGMSEDFR 120
           I ELL RVDTLE    RTG++ERGDSSTGSVAHIEERV ELDSSQK ++EMINGMSE+FR
Sbjct: 61  IQELLARVDTLEGTVGRTGSHERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSENFR 120

Query: 121 AALDVVRNEIADVSAR 133
           A LDVVRNEIADV+AR
Sbjct: 121 ATLDVVRNEIADVNAR 136

[Close]

BLAST of PI0010212 vs. NCBI nr
Match: KAA0041962.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK17897.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 164.5 bits (415), Expect = 1.1e-36
Identity = 100/196 (51.02%), Postives = 124/196 (63.27%), Query Frame = 0


Query: 1   MSTTKQMDKAHIDRLVEIEEQMFYLVEIPVTVHF----LKEIFEKVDATDAVTGRLDKLL 60
           MS+     KA  DRLVE+EEQM YLVE+P ++HF    L+EI EK D  DA+ GR++ L 
Sbjct: 1   MSSVNPSGKAQRDRLVELEEQMLYLVEVPDSIHFLESHLEEIAEKTDMIDAIAGRVEGLP 60

Query: 61  INELLTRVDTLEARAARTGNYERGDSSTGSVAHIEERVSELDSSQKLIVEMINGMSEDFR 120
           I +LL RVDTLE    RTG++ERGDSSTGSVAHIEERV ELDSSQK ++EMIN MSEDF 
Sbjct: 61  IQKLLARVDTLEGTVGRTGSHERGDSSTGSVAHIEERVQELDSSQKKLLEMINYMSEDFL 120

Query: 121 AALDVVRNEIADVSARWQ-----------------SDYLTCPVTLKMRDVIQVPHLEEIR 176
           A LDVVRNEIADV+AR                    D LTC    +   + ++ H+  IR
Sbjct: 121 ATLDVVRNEIADVNARLSLTMRAMANLGRSTICGGPDLLTC----RRDKLCELKHIGSIR 180

[Close]

BLAST of PI0010212 vs. NCBI nr
Match: KAA0031722.1 (uncharacterized protein E6C27_scaffold139G005100 [Cucumis melo var. makuwa])

HSP 1 Score: 164.1 bits (414), Expect = 1.4e-36
Identity = 91/138 (65.94%), Postives = 107/138 (77.54%), Query Frame = 0


Query: 1   MSTTKQMDKAHIDRLVEIEEQMFYLVEIPVTVHF----LKEIFEKVDATDAVTGRLDKLL 60
           MS++    KA  DRLVE+EEQM YLVE+P ++ +    L+EIF+K +  DAVTGR++   
Sbjct: 1   MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEIFQKTNTIDAVTGRVEGFP 60

Query: 61  INELLTRVDTLE--ARAARTGNYERGDSSTGSVAHIEERVSELDSSQKLIVEMINGMSED 120
           I EL+TRVD LE      RT NYERGDSSTGSVAHIEERV ELDSSQK ++EMINGMSED
Sbjct: 61  IQELMTRVDALETTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSED 120

Query: 121 FRAALDVVRNEIADVSAR 133
           FRA LDVVRNEIADV+AR
Sbjct: 121 FRATLDVVRNEIADVNAR 138

[Close]

BLAST of PI0010212 vs. NCBI nr
Match: KAA0045293.1 (uncharacterized protein E6C27_scaffold316G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 164.1 bits (414), Expect = 1.4e-36
Identity = 90/136 (66.18%), Postives = 105/136 (77.21%), Query Frame = 0


Query: 1   MSTTKQMDKAHIDRLVEIEEQMFYLVEIPVTVHF----LKEIFEKVDATDAVTGRLDKLL 60
           MS+     KA  DRL E+EEQM YL+E+P ++ F    L++I EK D  DAV GR++ LL
Sbjct: 1   MSSANPSGKAQRDRLKELEEQMLYLIEVPDSIRFLESRLEKIAEKTDMIDAVAGRVEGLL 60

Query: 61  INELLTRVDTLEARAARTGNYERGDSSTGSVAHIEERVSELDSSQKLIVEMINGMSEDFR 120
           I ELL RVDTLE    RTG++ERGDSSTGSVAHIEERV ELDSSQK ++EMIN MSEDFR
Sbjct: 61  IQELLARVDTLEETVGRTGSHERGDSSTGSVAHIEERVQELDSSQKTLLEMINVMSEDFR 120

Query: 121 AALDVVRNEIADVSAR 133
           A LDVVRNEIADV+AR
Sbjct: 121 ATLDVVRNEIADVNAR 136

The following BLAST results are available for this feature:

BLAST of PI0010212 vs.


Match Name	E-value	Identity	Description

BLAST of PI0010212 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DUL1	5.2e-40	60.84	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UCI7	8.8e-40	68.38	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TEV3	5.3e-37	51.02	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold30...	[more]
A0A5A7SKW3	7.0e-37	65.94	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7TP22	7.0e-37	66.18	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of PI0010212 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062476.1	1.1e-39	60.84	uncharacterized protein E6C27_scaffold130G00660 [Cucumis melo var. makuwa] >TYK2...	[more]
KAA0051251.1	1.8e-39	68.38	uncharacterized protein E6C27_scaffold2143G00070 [Cucumis melo var. makuwa] >TYK...	[more]
KAA0041962.1	1.1e-36	51.02	reverse transcriptase [Cucumis melo var. makuwa] >TYK17897.1 reverse transcripta...	[more]
KAA0031722.1	1.4e-36	65.94	uncharacterized protein E6C27_scaffold139G005100 [Cucumis melo var. makuwa]	[more]
KAA0045293.1	1.4e-36	66.18	uncharacterized protein E6C27_scaffold316G00510 [Cucumis melo var. makuwa]	[more]

BLAST of PI0010212 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0010212.1	PI0010212.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0005488	binding