PI0010179 (gene) Melon (PI 482460) v1

Overview


Name	PI0010179
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	GATA zinc finger domain-containing protein 10-like isoform X2
Location	chr01: 20268565 .. 20269907 (-)
RNA-Seq Expression	PI0010179
Synteny	PI0010179

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAACGATCATCTACTACCTGGACGAGCACACGGTTCACGGTATGCTATTTTATTTTAATTTAGATCAAACAGTAGTTTTAATAATAAATGAGTGATATAATTAATTCAAATCTAAAATATTAGTTTATTAATACAGATGGAGAGACCAATTTTGTGTAACAAGATCAGCTACTCATGTAGTTAGTCAATATAGATACATGTTTGATCTTCTTCAACGTGATCAGCTACATCAATACTAAAGTTTTAATTATTTTATACATTAGTATACATATATTTAGTGATTTTTAATGTAATGCGTGATATTTCAGATTATTTGGGAGCCTTACAAAAATGTAATACATAATTTACCCAATTTCTGTACGAATGGTCAACATATATGGCGGACCATCAGTCCTCTCATATGTTTTTATATTGGTGAGTGGCATTATCCTGATAGGGTGATCAGACAATTCGGTTTTAAACAAGATGTCCCATCAGAATGCAATACTGAGCCACTCCTACACAATATTGACTTGAGAGCCAGGGATTGGTCAGACAAGGTTGCACATTTGGTCATGCGATGGCAATCTCGTAGAAGATTCATTGCCACTGGAGTTTCGATTCAACAATTTGATTAGGATGTGACTTAAGAATACATCCATTGATATAATAATATTACGAGGCTCTACATCACTCGACCAGGAGCAGCTGTGGGTCATCTGGTACGTATTTAAATATTGAATAATTTTTTTAAATTCTTTACTCAATTAACTATTCTCTTATTTTTTTTCAATTCACAGAGATCGAACAACAGAAGACTTCGTGATGTTGCAGATGATCCGCAACAAGTCCTTGATATATGTAATAATAATGAGAGGTACATGGAGGAGATACATTATATGTACATGTACCTATTGTACCTCCACCAGTTAACAGGGGACGTGTTCGAGGGGAAAAACCTGAACTCGATGAAGTTTACCATAACGTAGAAGAAGTACCTCCAGTGACACAAACACAGAGCCAAATTGGTTATGGTAGCCCGATGATGATGATGCCAGCTTTTGGAGCAGGATATTGTGATTCTGAGATCGGTATAGGATATAATGACTTAGGGGTCGGTCCATCGTCTTCATACATGGATGTCGGACCATCAACTTCTTACATGCATGGACATGGACACGGACGCGACCGCGGAGAACATAACGAATTTCTGTACTATGAAGCACCTACAGATGTTCCAGATCCACAAGAGTACCAACAAGAACCAGAGAATCAAGAGGAGTTAGGGCAACCAAGAGTTCAGAGTCGGCGACGACAACCAACCCGAAATCGACGACGTCCTGGTTGTGGAACACATTGA

mRNA sequence

ATGCAAACGATCATCTACTACCTGGACGAGCACACGGTTCACGTTAACAGGGGACGTGTTCGAGGGGAAAAACCTGAACTCGATGAAGTTTACCATAACGTAGAAGAAGTACCTCCAGTGACACAAACACAGAGCCAAATTGGTTATGGTAGCCCGATGATGATGATGCCAGCTTTTGGAGCAGGATATTGTGATTCTGAGATCGGTATAGGATATAATGACTTAGGGGTCGGTCCATCGTCTTCATACATGGATGTCGGACCATCAACTTCTTACATGCATGGACATGGACACGGACGCGACCGCGGAGAACATAACGAATTTCTGTACTATGAAGCACCTACAGATGTTCCAGATCCACAAGAGTACCAACAAGAACCAGAGAATCAAGAGGAGTTAGGGCAACCAAGAGTTCAGAGTCGGCGACGACAACCAACCCGAAATCGACGACGTCCTGGTTGTGGAACACATTGA

Coding sequence (CDS)

ATGCAAACGATCATCTACTACCTGGACGAGCACACGGTTCACGTTAACAGGGGACGTGTTCGAGGGGAAAAACCTGAACTCGATGAAGTTTACCATAACGTAGAAGAAGTACCTCCAGTGACACAAACACAGAGCCAAATTGGTTATGGTAGCCCGATGATGATGATGCCAGCTTTTGGAGCAGGATATTGTGATTCTGAGATCGGTATAGGATATAATGACTTAGGGGTCGGTCCATCGTCTTCATACATGGATGTCGGACCATCAACTTCTTACATGCATGGACATGGACACGGACGCGACCGCGGAGAACATAACGAATTTCTGTACTATGAAGCACCTACAGATGTTCCAGATCCACAAGAGTACCAACAAGAACCAGAGAATCAAGAGGAGTTAGGGCAACCAAGAGTTCAGAGTCGGCGACGACAACCAACCCGAAATCGACGACGTCCTGGTTGTGGAACACATTGA

Protein sequence

MQTIIYYLDEHTVHVNRGRVRGEKPELDEVYHNVEEVPPVTQTQSQIGYGSPMMMMPAFGAGYCDSEIGIGYNDLGVGPSSSYMDVGPSTSYMHGHGHGRDRGEHNEFLYYEAPTDVPDPQEYQQEPENQEELGQPRVQSRRRQPTRNRRRPGCGTH

Homology

[Close]

BLAST of PI0010179 vs. ExPASy TrEMBL
Match: A0A5D3CXX3 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001390 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 2.5e-54
Identity = 112/143 (78.32%), Postives = 119/143 (83.22%), Query Frame = 0


Query: 15  VNRGRVRGEKPELDEVYHNVEEVPPVTQTQSQIGYGSPMMMMPAFGAGYCDSEIGIGYND 74
           V+RGRVR E+ ELDEVYHNVEEVPP TQTQSQ GYGSPMMMMP FGAGYCDSE+  GY D
Sbjct: 11  VHRGRVRVEEVELDEVYHNVEEVPPTTQTQSQTGYGSPMMMMPTFGAGYCDSEVSTGYYD 70

Query: 75  LGVGPSSSYMDVGPSTSYMHGHGHGRDRGEHNEFLYYEAPTDVPDPQEYQQEPENQEELG 134
            G+GP SSYMDVGPS SYMHGHG G   GEHNE+LY+EAP DV D QEYQQEPENQE+  
Sbjct: 71  AGIGPLSSYMDVGPSNSYMHGHGRG--YGEHNEYLYHEAPADVSDRQEYQQEPENQEDRE 130

Query: 135 QPRVQSRRRQPTRNRRRPGCGTH 158
           Q RVQSRRRQPTRNRR   CGTH
Sbjct: 131 QHRVQSRRRQPTRNRRHLSCGTH 151

[Close]

BLAST of PI0010179 vs. ExPASy TrEMBL
Match: A0A5A7V342 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001560 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 4.8e-53
Identity = 111/143 (77.62%), Postives = 119/143 (83.22%), Query Frame = 0


Query: 15  VNRGRVRGEKPELDEVYHNVEEVPPVTQTQSQIGYGSPMMMMPAFGAGYCDSEIGIGYND 74
           V+RG VR E+ ELD+VYHNVEEVP  TQTQSQ GYGSPM MMP F AGYCD E+GIGY D
Sbjct: 82  VHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYD 141

Query: 75  LGVGPSSSYMDVGPSTSYMHGHGHGRDRGEHNEFLYYEAPTDVPDPQEYQQEPENQEELG 134
            GVGPSSSY+DV PSTSYMHGH  G   GEHNE+LY+EAP DV D QEYQQEPENQE+  
Sbjct: 142 AGVGPSSSYVDVSPSTSYMHGHSRG--YGEHNEYLYHEAPADVSDRQEYQQEPENQEDRE 201

Query: 135 QPRVQSRRRQPTRNRRRPGCGTH 158
           Q RVQSRRRQPTRNRRRPGCGTH
Sbjct: 202 QHRVQSRRRQPTRNRRRPGCGTH 222

[Close]

BLAST of PI0010179 vs. ExPASy TrEMBL
Match: A0A5D3BSG8 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00130 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 6.9e-52
Identity = 110/143 (76.92%), Postives = 118/143 (82.52%), Query Frame = 0


Query: 15  VNRGRVRGEKPELDEVYHNVEEVPPVTQTQSQIGYGSPMMMMPAFGAGYCDSEIGIGYND 74
           V+RG VR E+ ELD+VYHNVEEVP  TQTQSQ GYGSPM MMP F AGYCD E+GIGY D
Sbjct: 70  VHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYD 129

Query: 75  LGVGPSSSYMDVGPSTSYMHGHGHGRDRGEHNEFLYYEAPTDVPDPQEYQQEPENQEELG 134
            GVGPSSSY+DV PSTSYMHGH  G   GEHNE+LY+EAP DV D QEYQQEPENQE+  
Sbjct: 130 AGVGPSSSYVDVSPSTSYMHGHRRG--YGEHNEYLYHEAPADVSDRQEYQQEPENQEDRE 189

Query: 135 QPRVQSRRRQPTRNRRRPGCGTH 158
           Q RVQSRRRQPTRNRR PGCGTH
Sbjct: 190 QHRVQSRRRQPTRNRRCPGCGTH 210

[Close]

BLAST of PI0010179 vs. ExPASy TrEMBL
Match: A0A5D3DJV7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00060 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 2.0e-51
Identity = 109/143 (76.22%), Postives = 118/143 (82.52%), Query Frame = 0


Query: 15  VNRGRVRGEKPELDEVYHNVEEVPPVTQTQSQIGYGSPMMMMPAFGAGYCDSEIGIGYND 74
           V+R R R E+ ELDEVYHNVEEVPP TQTQSQ GYGSPM MMP FGAGYCDSE+ IGY D
Sbjct: 360 VHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCDSEVSIGYYD 419

Query: 75  LGVGPSSSYMDVGPSTSYMHGHGHGRDRGEHNEFLYYEAPTDVPDPQEYQQEPENQEELG 134
             VGP SSYMDVGPSTSYM+GHG G   GEHNE+LY+EAPTDV D QEYQQEP+NQE+  
Sbjct: 420 AVVGPLSSYMDVGPSTSYMYGHGRG--YGEHNEYLYHEAPTDVSDRQEYQQEPKNQEDRE 479

Query: 135 QPRVQSRRRQPTRNRRRPGCGTH 158
           Q RVQSRRRQP RNR+  GCGTH
Sbjct: 480 QHRVQSRRRQPARNRQCSGCGTH 500

[Close]

BLAST of PI0010179 vs. ExPASy TrEMBL
Match: A0A5A7SLF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002870 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.4e-44
Identity = 96/137 (70.07%), Postives = 109/137 (79.56%), Query Frame = 0


Query: 5   IYYLDEHTVHVNRGRVRGEKPELDEVYHNVEEVPPVTQTQSQIGYGSPMMMMPAFGAGYC 64
           +Y+L      ++RGRV+ E+ ELDEVYHNVEE+ P TQ Q+Q GYGSPM+MMP FG GYC
Sbjct: 69  MYHLPIVPPQIHRGRVQVEEAELDEVYHNVEEMTPTTQKQNQTGYGSPMIMMPTFGVGYC 128

Query: 65  DSEIGIGYNDLGVGPSSSYMDVGPSTSYMHGHGHGRDRGEHNEFLYYEAPTDVPDPQEYQ 124
           D E+   Y D GVGPSSSYMDVGPSTSYMHGH H  D GEHNE+LY+EAPT+V D QEYQ
Sbjct: 129 DFEVNTEYYDSGVGPSSSYMDVGPSTSYMHGHRH--DYGEHNEYLYHEAPTEVSDRQEYQ 188

Query: 125 QEPENQEELGQPRVQSR 142
           QEPENQEEL Q RVQSR
Sbjct: 189 QEPENQEELEQHRVQSR 203

[Close]

BLAST of PI0010179 vs. NCBI nr
Match: KAA0049532.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK16210.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 221.5 bits (563), Expect = 5.2e-54
Identity = 112/143 (78.32%), Postives = 119/143 (83.22%), Query Frame = 0


Query: 15  VNRGRVRGEKPELDEVYHNVEEVPPVTQTQSQIGYGSPMMMMPAFGAGYCDSEIGIGYND 74
           V+RGRVR E+ ELDEVYHNVEEVPP TQTQSQ GYGSPMMMMP FGAGYCDSE+  GY D
Sbjct: 11  VHRGRVRVEEVELDEVYHNVEEVPPTTQTQSQTGYGSPMMMMPTFGAGYCDSEVSTGYYD 70

Query: 75  LGVGPSSSYMDVGPSTSYMHGHGHGRDRGEHNEFLYYEAPTDVPDPQEYQQEPENQEELG 134
            G+GP SSYMDVGPS SYMHGHG G   GEHNE+LY+EAP DV D QEYQQEPENQE+  
Sbjct: 71  AGIGPLSSYMDVGPSNSYMHGHGRG--YGEHNEYLYHEAPADVSDRQEYQQEPENQEDRE 130

Query: 135 QPRVQSRRRQPTRNRRRPGCGTH 158
           Q RVQSRRRQPTRNRR   CGTH
Sbjct: 131 QHRVQSRRRQPTRNRRHLSCGTH 151

[Close]

BLAST of PI0010179 vs. NCBI nr
Match: KAA0062642.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 217.2 bits (552), Expect = 9.8e-53
Identity = 111/143 (77.62%), Postives = 119/143 (83.22%), Query Frame = 0


Query: 15  VNRGRVRGEKPELDEVYHNVEEVPPVTQTQSQIGYGSPMMMMPAFGAGYCDSEIGIGYND 74
           V+RG VR E+ ELD+VYHNVEEVP  TQTQSQ GYGSPM MMP F AGYCD E+GIGY D
Sbjct: 82  VHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYD 141

Query: 75  LGVGPSSSYMDVGPSTSYMHGHGHGRDRGEHNEFLYYEAPTDVPDPQEYQQEPENQEELG 134
            GVGPSSSY+DV PSTSYMHGH  G   GEHNE+LY+EAP DV D QEYQQEPENQE+  
Sbjct: 142 AGVGPSSSYVDVSPSTSYMHGHSRG--YGEHNEYLYHEAPADVSDRQEYQQEPENQEDRE 201

Query: 135 QPRVQSRRRQPTRNRRRPGCGTH 158
           Q RVQSRRRQPTRNRRRPGCGTH
Sbjct: 202 QHRVQSRRRQPTRNRRRPGCGTH 222

[Close]

BLAST of PI0010179 vs. NCBI nr
Match: TYK01176.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 213.4 bits (542), Expect = 1.4e-51
Identity = 110/143 (76.92%), Postives = 118/143 (82.52%), Query Frame = 0


Query: 15  VNRGRVRGEKPELDEVYHNVEEVPPVTQTQSQIGYGSPMMMMPAFGAGYCDSEIGIGYND 74
           V+RG VR E+ ELD+VYHNVEEVP  TQTQSQ GYGSPM MMP F AGYCD E+GIGY D
Sbjct: 70  VHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYD 129

Query: 75  LGVGPSSSYMDVGPSTSYMHGHGHGRDRGEHNEFLYYEAPTDVPDPQEYQQEPENQEELG 134
            GVGPSSSY+DV PSTSYMHGH  G   GEHNE+LY+EAP DV D QEYQQEPENQE+  
Sbjct: 130 AGVGPSSSYVDVSPSTSYMHGHRRG--YGEHNEYLYHEAPADVSDRQEYQQEPENQEDRE 189

Query: 135 QPRVQSRRRQPTRNRRRPGCGTH 158
           Q RVQSRRRQPTRNRR PGCGTH
Sbjct: 190 QHRVQSRRRQPTRNRRCPGCGTH 210

[Close]

BLAST of PI0010179 vs. NCBI nr
Match: TYK23842.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 211.8 bits (538), Expect = 4.1e-51
Identity = 109/143 (76.22%), Postives = 118/143 (82.52%), Query Frame = 0


Query: 15  VNRGRVRGEKPELDEVYHNVEEVPPVTQTQSQIGYGSPMMMMPAFGAGYCDSEIGIGYND 74
           V+R R R E+ ELDEVYHNVEEVPP TQTQSQ GYGSPM MMP FGAGYCDSE+ IGY D
Sbjct: 360 VHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCDSEVSIGYYD 419

Query: 75  LGVGPSSSYMDVGPSTSYMHGHGHGRDRGEHNEFLYYEAPTDVPDPQEYQQEPENQEELG 134
             VGP SSYMDVGPSTSYM+GHG G   GEHNE+LY+EAPTDV D QEYQQEP+NQE+  
Sbjct: 420 AVVGPLSSYMDVGPSTSYMYGHGRG--YGEHNEYLYHEAPTDVSDRQEYQQEPKNQEDRE 479

Query: 135 QPRVQSRRRQPTRNRRRPGCGTH 158
           Q RVQSRRRQP RNR+  GCGTH
Sbjct: 480 QHRVQSRRRQPARNRQCSGCGTH 500

[Close]

BLAST of PI0010179 vs. NCBI nr
Match: KAA0025972.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 189.1 bits (479), Expect = 2.9e-44
Identity = 96/137 (70.07%), Postives = 109/137 (79.56%), Query Frame = 0


Query: 5   IYYLDEHTVHVNRGRVRGEKPELDEVYHNVEEVPPVTQTQSQIGYGSPMMMMPAFGAGYC 64
           +Y+L      ++RGRV+ E+ ELDEVYHNVEE+ P TQ Q+Q GYGSPM+MMP FG GYC
Sbjct: 69  MYHLPIVPPQIHRGRVQVEEAELDEVYHNVEEMTPTTQKQNQTGYGSPMIMMPTFGVGYC 128

Query: 65  DSEIGIGYNDLGVGPSSSYMDVGPSTSYMHGHGHGRDRGEHNEFLYYEAPTDVPDPQEYQ 124
           D E+   Y D GVGPSSSYMDVGPSTSYMHGH H  D GEHNE+LY+EAPT+V D QEYQ
Sbjct: 129 DFEVNTEYYDSGVGPSSSYMDVGPSTSYMHGHRH--DYGEHNEYLYHEAPTEVSDRQEYQ 188

Query: 125 QEPENQEELGQPRVQSR 142
           QEPENQEEL Q RVQSR
Sbjct: 189 QEPENQEELEQHRVQSR 203

The following BLAST results are available for this feature:

BLAST of PI0010179 vs.


Match Name	E-value	Identity	Description

BLAST of PI0010179 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CXX3	2.5e-54	78.32	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5A7V342	4.8e-53	77.62	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3BSG8	6.9e-52	76.92	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5D3DJV7	2.0e-51	76.22	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5A7SLF8	1.4e-44	70.07	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]

BLAST of PI0010179 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0049532.1	5.2e-54	78.32	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
KAA0062642.1	9.8e-53	77.62	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
TYK01176.1	1.4e-51	76.92	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
TYK23842.1	4.1e-51	76.22	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
KAA0025972.1	2.9e-44	70.07	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]

BLAST of PI0010179 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0010179.1	PI0010179.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010073	meristem maintenance