PI0010105 (gene) Melon (PI 482460) v1

Overview


Name	PI0010105
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	DNA-directed RNA polymerases II and IV subunit 5A-like
Location	chr12: 10011507 .. 10015256 (-)
RNA-Seq Expression	PI0010105
Synteny	PI0010105

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAACAGGTAAGCTTTCTCTTTCATTTCTCTTACGCTTCAGCATATTTACAGTTAAGTTTTTTTTCCAAATTTGCATCATTCTAGTTGGTTGATATAGACTTGAACAATGATTCATATTTAAAGATGAATTTTTCAGGCATTATCTTATCAATTTTGGACCTTCGTTACCCACAATAATACTTGTAATTGCCTAACAAATAATTTTGTATAATGTTGATGCGGAAGACTTTTATGCTAACCAATGGAGAGTTCAACATTATCTAGGATTTATTTCAGATACACACATGTAGCCCAATGGTAATAACAAATTTATCAATCGTTTTTTATGAGATAGTTTAATCTTTTGTTGTCCAGGCTAGAAAGGATGTACATAATTCGATGTGCCAGAGAGATGCCAGGATCTAGTTCAAGGTGAAATGGCTACAAAACAAGTGTGAAGCTTCATTCATTCATGGAGCAGAGTCCAGCAAGAAATTAGAGCACGTAGACTCCGTATGGTCACAGAATATCGAGTCAAGCAAAAGAAACTGGAAAATCAGATGAAACTTGAGGCTAAAATTCATGAACTTGAGGTAAGTACCATTGACGTTCCTCCTTGCTATTGAACATTCTGATTGAGTACTCAGTTTCTTCTAATAAAGTTGAACAAAATCTTTTCTGGGTTGTTTGAATCTTAGGAGATCAGCGTTATCATCGCTTTGATTGCTGCTTAAAATGTTCATGCTTACATAGTTTTTATGGGGAATGACATGATTATGAAATGTAATATGTGTTAACCCACTTGGACACTCGCTATATTATATTTTTGCTTACTCACTTACAATCCTTCATTCAAAATAGATTAAAGAAAATCATGGGAAATTTTCTTTATAGCCAAATTTTAGGGACAAGTTGGACGATGTTCTTTTGCTCCTTTAGGAATTAGAAAATGTCTACTTCAACATGTGTTTAACTTTACATTACAGATTATAGAATATAGATTTTATGGGATTCTAGATTGTTTATTTGTTTGCTTTTGGTTGGTTTCTAAATGTTCAAATGCTAATTCATTCTATCTCTCTTTTTTTCTTTTGCAAACCTATGGATGAACTCTTTCTCTCTTTCTTTTTGCACATTTCTCCAGAACCACTGTTAGACCTTCAACTATTCACACGTACCAGGGGGTAAAAGAGGAAAGTTGGGAATCAAAGAGAATGTTGGCACGGAAAGAATTGTTACCTGAGGTGGGGACCATTGGCAAGGGGTTTGGGAATCATTCTGAGGTGTGAAGAATTTGGGAAGCTCTTGAGCTTTGGGAGAGGAGGCTGCTCTTGAAACCTACCATATCTTTTTCTTAATTTTCTATTTCTTCTTCTTGTTCTTCTACTTTTCTCTGAGTTCATCTTTCTCTTTGGATATTTGAACTACATTGTGATTATTGGTTGTTTCTCTTCTCTAAATATCGTAAACAGAGTTTATTGTCTCTGTTAGTGTTCTTGCTGGGAATTTTCTAAGTCTAAGGGAAATAGATACCTAACCAACTCTATCTTATCACTCTACATTCTAAACACAAGCTTTCTAACCCCAACATATTAATCTTTGAAAAAAACCCTACATATTAACTCCAAATTTCCTAACTCAACTCAATATTCCAAATACCTCTGAAGTGTTATAAAGTGGGGTCGCAGTGAAACATTCAATTAGTTGTGTTTTTGAACATGTTTAAACTTTGCCTTACTGAAATGTTGGAGTAAATTTCACCACGAGAAGTTTGTATTTGAGTCATTCTCAATTACTTTGAGACATGCAAAATACTTAACTATCAATGGTCGAGTAGTAAATAATATTATTTGATAAACATTTACCAAATTTATGTAAATTTTGGTTATAGGGATGTACAGGTTATTTTTTCTTGTTCCCCTCATTTTATTTACGACTCTTTATCCAAACATGTCTTTCAATCCTGAAGAGGCCAAGGTTGTGTCAAACCTCCTATCATTCATATATATAAAAGGAGGGGTAAGAGGGTAATTATACAAGAGACAGAATTTGGAGAAAGAATTATGGGAGGGAATAAAGCTGGAAGGGCCCACTAATCATGAGAGATATAAATAGAAAAGTTTTAGGGATTGGTGAGGTAGGGTCTTTTGTAGTAAAAAGCTGCTAGGTTTTTAGGGAGAAATTTACAGCCCTCTCTAAAGTGCTGGTTGTTTTTGGGTATTTTCTTCTTCTTGTTAAGTCTTTTTATGTTGCTTGTATGAATTTTTCAGTATTAAAGTAACAAATATATTAAAGTGTTGTCTCTGTTTTTGCCTATTGTTGGGATTCATTATTGATTTAAGGAAGATATGGTATCAAGACAGTGGACACTTAAAAAAGTTGTATGAAATCAGAAAATGTTTATAAAGCAATAATATATTGGTTGTTCAACTTTATCTGACCCTCTTTGCTCGTGCTAGGATTAGTGAAACATCGTCTAAATTTCATTTAGAGTTTTTCTAGGTAAAAATTAAATCTCTAAATAGTTTCTAGAGCCTTTTAATGTCTGATAGATTACAGTAATATTATGACATGCAACAAATTTGATGAGAAGTAGAGGGGATATTCTTATGCTCCTATCCTTATAAAACTACTTCTCATACTTTTGTTATCTCTCACATCATCAGTAAGAATGAAAGGGGGTTGGGAGGGTGGGGATAAAGAATGGTAATGCTAGTTTGTAATTACTCATGTGATTTCCATTTTCCATATAATAATGCCATGCCTACATTCTTATTTTACTGAAGTTAATGTTTATCTCTTTGTCACTTTTTGATGCAGGAAGCAGAATTGATGGTTGACGTCGAAGAACACGTTCTGATTCCTGACCACCAGTTGCTGACAAATAAAGAGAAGAAGACGTTGTTGGAGAGAGATACGGTGTCGGTGAAAGAAACACAGGTGATTTTCATTTTATTTGATCTTATCTTTCTTCAAATACAAGAACATTGTGAGAATTATCTTCCATAAATGTGTTGAAAGAACGTTGGTAGATTGATCCATGGTGCATAAGAGATTTGTAAGGAATAAAGGTTTTAGGGAATGAGTTTAAGTATGATGGTAACTTACCTAAGTTTTAATATCCTGCAAGTTACTTTAACAATCAAATATAGTAGGGTTTGACAGTTGTTTCGTTAGAATAGTACAATTTGACTCTGACACTCTTGGATACATAATGAGATGTGTATAAGTTAATTCCTAATGTGATTTAGTATTTTGTCTCAGCTACCTCGTATATAGGTTACTGATCCGATTGCTAGACATTATGGAATGAAACATAGACAAGTAGTTAAGATTATCCGACCAAGCGAAACTGGTACTTGCTTACTTGGAAGTGTGAAAGTGGTTCGTTCCAGTTTGAGGGAATTCTCCTGTACAAGCTCTCAAACTAGAAAATTCATTCATTTAAAATTCAATTCAACGTGTTTCAATTTCTAAGGTTCGTTAAAACTTTAATAAACATGGGAAGATATTGCAATAGATTACACATTGTTGGATATGAAAGCAACACCGTACTTCTAAAGCTTTTGTTTTGATAACCAAATGAAAATGGAAACCATTAGGTAAATCTAACTTTCCAATGCTGGGGAATAAGACACTTTAGACATAAATGTTTCATGTTTAAATTCATTTTCCTTTAGGAAAATTTTCGGATGACAGCTTAAAGTGCTGTGCCAAAGGAGGAGACACAGCTTTAATTTGGACGAATTTTCAGTTGATAGCTTGA

mRNA sequence

ATGGAGAACAGGCTAGAAAGGATGTACATAATTCGATGTGCCAGAGAGATGCCAGGATCTAGTTCAAGAGTCCAGCAAGAAATTAGAGCACGTAGACTCCGTATGGTCACAGAATATCGAGTCAAGCAAAAGAAACTGGAAAATCAGATGAAACTTGAGGCTAAAATTCATGAACTTGAGGAATTAGAAAATGTCTACTTCAACATAACCACTGTTAGACCTTCAACTATTCACACGTACCAGGGGGTAAAAGAGGAAAGTTGGGAATCAAAGAGAATGTTGGCACGGAAAGAATTGTTACCTGAGGTGGGGACCATTGGCAAGGGGTTTGGGAATCATTCTGAGGAAGCAGAATTGATGGTTGACGTCGAAGAACACGTTCTGATTCCTGACCACCAGTTGCTGACAAATAAAGAGAAGAAGACGTTGTTGGAGAGAGATACGGTGTCGGTGAAAGAAACACAGGTTACTGATCCGATTGCTAGACATTATGGAATGAAACATAGACAAGTAGTTAAGATTATCCGACCAAGCGAAACTGGAAAATTTTCGGATGACAGCTTAAAGTGCTGTGCCAAAGGAGGAGACACAGCTTTAATTTGGACGAATTTTCAGTTGATAGCTTGA

Coding sequence (CDS)

ATGGAGAACAGGCTAGAAAGGATGTACATAATTCGATGTGCCAGAGAGATGCCAGGATCTAGTTCAAGAGTCCAGCAAGAAATTAGAGCACGTAGACTCCGTATGGTCACAGAATATCGAGTCAAGCAAAAGAAACTGGAAAATCAGATGAAACTTGAGGCTAAAATTCATGAACTTGAGGAATTAGAAAATGTCTACTTCAACATAACCACTGTTAGACCTTCAACTATTCACACGTACCAGGGGGTAAAAGAGGAAAGTTGGGAATCAAAGAGAATGTTGGCACGGAAAGAATTGTTACCTGAGGTGGGGACCATTGGCAAGGGGTTTGGGAATCATTCTGAGGAAGCAGAATTGATGGTTGACGTCGAAGAACACGTTCTGATTCCTGACCACCAGTTGCTGACAAATAAAGAGAAGAAGACGTTGTTGGAGAGAGATACGGTGTCGGTGAAAGAAACACAGGTTACTGATCCGATTGCTAGACATTATGGAATGAAACATAGACAAGTAGTTAAGATTATCCGACCAAGCGAAACTGGAAAATTTTCGGATGACAGCTTAAAGTGCTGTGCCAAAGGAGGAGACACAGCTTTAATTTGGACGAATTTTCAGTTGATAGCTTGA

Protein sequence

MENRLERMYIIRCAREMPGSSSRVQQEIRARRLRMVTEYRVKQKKLENQMKLEAKIHELEELENVYFNITTVRPSTIHTYQGVKEESWESKRMLARKELLPEVGTIGKGFGNHSEEAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKETQVTDPIARHYGMKHRQVVKIIRPSETGKFSDDSLKCCAKGGDTALIWTNFQLIA

Homology

[Close]

BLAST of PI0010105 vs. ExPASy Swiss-Prot
Match: O81098 (DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana OX=3702 GN=NRPB5A PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.1e-17
Identity = 47/71 (66.20%), Postives = 60/71 (84.51%), Query Frame = 0


Query: 115 EEAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKET-----QVTDPIARHYGMKHR 174
           +EAE++V+++EHVL+P+HQ+LT +EKKTLLER T  VKET     QVTDPIAR++G+K  
Sbjct: 126 QEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYT--VKETQLPRIQVTDPIARYFGLKRG 185

Query: 175 QVVKIIRPSET 181
           QVVKIIRPSET
Sbjct: 186 QVVKIIRPSET 194

[Close]

BLAST of PI0010105 vs. ExPASy Swiss-Prot
Match: A8XGH1 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis briggsae OX=6238 GN=rpb-5 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.3e-10
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = 0


Query: 113 HSEEAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTV---SVKETQVTDPIARHYGMKHR 172
           H  EAELMV++ EH L+P+H ++T +EK  LL R  +    +   Q  DP+AR++G++  
Sbjct: 130 HFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRG 189

Query: 173 QVVKIIRPSET 181
           QVVKIIRPSET
Sbjct: 190 QVVKIIRPSET 200

[Close]

BLAST of PI0010105 vs. ExPASy Swiss-Prot
Match: Q9N5K2 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis elegans OX=6239 GN=rpb-5 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.3e-10
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = 0


Query: 113 HSEEAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTV---SVKETQVTDPIARHYGMKHR 172
           H  EAELMV++ EH L+P+H ++T +EK  LL R  +    +   Q  DP+AR++G++  
Sbjct: 130 HFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRG 189

Query: 173 QVVKIIRPSET 181
           QVVKIIRPSET
Sbjct: 190 QVVKIIRPSET 200

[Close]

BLAST of PI0010105 vs. ExPASy Swiss-Prot
Match: Q54EH2 (DNA-directed RNA polymerases I, II, and III subunit rpabc1 OS=Dictyostelium discoideum OX=44689 GN=polr2e PE=3 SV=2)

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-09
Identity = 35/70 (50.00%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 116 EAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKETQV-----TDPIARHYGMKHRQ 175
           EAEL+V++  H L+P H LLT +EK  LL R    +KE+Q+      DP+AR+YG+    
Sbjct: 119 EAELLVNITHHQLVPKHILLTKEEKLELLTR--YKMKESQLPRIQTNDPVARYYGLSRGH 178

Query: 176 VVKIIRPSET 181
           VVKI+RPSET
Sbjct: 179 VVKIVRPSET 186

[Close]

BLAST of PI0010105 vs. ExPASy Swiss-Prot
Match: Q6CA26 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=RPB5 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.2e-09
Identity = 41/131 (31.30%), Postives = 70/131 (53.44%), Query Frame = 0


Query: 59  LEELENVYFNITTVRPSTIHTYQGVKEESWESKRMLARKELLPE----VGTIGKGFGNHS 118
           +E  E     + T+R   IH    + E  + +  ++    + P     + ++     +  
Sbjct: 77  VEFCEEASVTVKTMRNFCIH----ISENKFATGILVYENNMTPSANRLIPSVAPATIDTF 136

Query: 119 EEAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKETQV-----TDPIARHYGMKHR 178
           +E +L+V++ +HVL+P H  L+  EKK LLER    +KE+Q+      DP+AR+ G++  
Sbjct: 137 QETDLLVNITKHVLVPTHIKLSGAEKKFLLER--YRLKESQLPRIQREDPVARYLGLRRG 196

Query: 179 QVVKIIRPSET 181
           Q+VKIIR SET
Sbjct: 197 QIVKIIRRSET 201

[Close]

BLAST of PI0010105 vs. ExPASy TrEMBL
Match: A0A1S4E290 (DNA-directed RNA polymerases II and IV subunit 5A-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498269 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 6.6e-18
Identity = 51/66 (77.27%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 115 EEAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKETQVTDPIARHYGMKHRQVVKI 174
           +EAEL+V++++HVLIP+HQLLTN+EKKTLLER T  VK+TQVTDPIAR+YGMK  QVVKI
Sbjct: 126 QEAELLVNIKDHVLIPEHQLLTNEEKKTLLERYT--VKDTQVTDPIARYYGMKRGQVVKI 185

Query: 175 IRPSET 181
           IRPSET
Sbjct: 186 IRPSET 189

[Close]

BLAST of PI0010105 vs. ExPASy TrEMBL
Match: A0A498KFU4 (Cytokinin dehydrogenase OS=Malus domestica OX=3750 GN=DVH24_018123 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 9.5e-17
Identity = 60/113 (53.10%), Postives = 80/113 (70.80%), Query Frame = 0


Query: 76  TIHTYQG-VKEESWESKRMLARKELLPEVGT-IGKGFGN-HSEEAELMVDVEEHVLIPDH 135
           T+ TY   +K E+     ++ ++ L P   T I +  G  H EEAEL+V+++EHVL+P+H
Sbjct: 764 TMKTYTNRMKSENVFRAILVTQQSLTPFAKTCISEISGKFHLEEAELLVNIKEHVLVPEH 823

Query: 136 QLLTNKEKKTLLERDTVSVKET-----QVTDPIARHYGMKHRQVVKIIRPSET 181
           ++LTN+EKKTLLER T  VKET     QVTDPIA++YG+K  QVVKIIRPSET
Sbjct: 824 RVLTNEEKKTLLERYT--VKETQLPRIQVTDPIAKYYGLKRAQVVKIIRPSET 874

[Close]

BLAST of PI0010105 vs. ExPASy TrEMBL
Match: A0A4Y1QZG9 (Eukaryotic rpb5 RNA polymerase subunit family protein OS=Prunus dulcis OX=3755 GN=Prudu_006324 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-16
Identity = 48/66 (72.73%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 115 EEAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKETQVTDPIARHYGMKHRQVVKI 174
           +E ELMV+V EHVL+P+HQLLTN+EKKTLLER T  VKETQ+TDP+A++YG+K  QV+KI
Sbjct: 132 QEPELMVNVTEHVLVPEHQLLTNEEKKTLLERYT--VKETQLTDPVAKYYGLKRGQVMKI 191

Query: 175 IRPSET 181
           IRPSET
Sbjct: 192 IRPSET 195

[Close]

BLAST of PI0010105 vs. ExPASy TrEMBL
Match: A0A1D1ZFV1 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 (Fragment) OS=Anthurium amnicola OX=1678845 GN=Polr2e_1 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-16
Identity = 59/116 (50.86%), Postives = 81/116 (69.83%), Query Frame = 0


Query: 76  TIHTY-QGVKEESWESKRMLARKELLPEVGTIGKGFGN--HSE---EAELMVDVEEHVLI 135
           T+ TY   +K E+     ++ ++ L P   +  + FG+  H E   EAEL+V+++EHVL+
Sbjct: 88  TLKTYVNRMKSENVYRAILVCQQNLTPFARSALQDFGSKFHVEIFQEAELLVNIKEHVLV 147

Query: 136 PDHQLLTNKEKKTLLERDTVSVKET-----QVTDPIARHYGMKHRQVVKIIRPSET 181
           P+HQLLTN++KKTLLER T  +KET     Q+TDPIAR+YG+K  QVVKIIRPSET
Sbjct: 148 PEHQLLTNEDKKTLLERYT--LKETQLPRIQITDPIARYYGLKRGQVVKIIRPSET 201

[Close]

BLAST of PI0010105 vs. ExPASy TrEMBL
Match: A0A1S3C8T2 (DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498269 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.1e-16
Identity = 49/69 (71.01%), Postives = 59/69 (85.51%), Query Frame = 0


Query: 115 EEAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTV---SVKETQVTDPIARHYGMKHRQV 174
           +EAEL+V++++HVLIP+HQLLTN+EKKTLLER TV    +   QVTDPIAR+YGMK  QV
Sbjct: 126 QEAELLVNIKDHVLIPEHQLLTNEEKKTLLERYTVKDTQLPRMQVTDPIARYYGMKRGQV 185

Query: 175 VKIIRPSET 181
           VKIIRPSET
Sbjct: 186 VKIIRPSET 194

[Close]

BLAST of PI0010105 vs. NCBI nr
Match: XP_038895255.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Benincasa hispida] >XP_038895256.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Benincasa hispida] >XP_038895258.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Benincasa hispida] >XP_038895259.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Benincasa hispida])

HSP 1 Score: 102.4 bits (254), Expect = 4.7e-18
Identity = 66/118 (55.93%), Postives = 81/118 (68.64%), Query Frame = 0


Query: 76  TIHTY-QGVKEESWESKRMLARKELLP----EVGTIGKGFGNHSE---EAELMVDVEEHV 135
           T+ TY   +K E+     ++ ++ L P    +VG I   F  H E   EAELMV++++HV
Sbjct: 82  TVQTYVNRMKSENVSRALLVVQQNLTPFARTKVGEISSQF--HLEVFQEAELMVNIKDHV 141

Query: 136 LIPDHQLLTNKEKKTLLERDTVSVKET-----QVTDPIARHYGMKHRQVVKIIRPSET 181
           LIP+HQLLTN+EKKTLLER T  VKET     QVTDPIAR+YGMK  QVVKIIRPSET
Sbjct: 142 LIPEHQLLTNEEKKTLLERYT--VKETQLPRIQVTDPIARYYGMKRGQVVKIIRPSET 195

[Close]

BLAST of PI0010105 vs. NCBI nr
Match: XP_016902349.1 (PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like isoform X2 [Cucumis melo])

HSP 1 Score: 100.9 bits (250), Expect = 1.4e-17
Identity = 51/66 (77.27%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 115 EEAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKETQVTDPIARHYGMKHRQVVKI 174
           +EAEL+V++++HVLIP+HQLLTN+EKKTLLER T  VK+TQVTDPIAR+YGMK  QVVKI
Sbjct: 126 QEAELLVNIKDHVLIPEHQLLTNEEKKTLLERYT--VKDTQVTDPIARYYGMKRGQVVKI 185

Query: 175 IRPSET 181
           IRPSET
Sbjct: 186 IRPSET 189

[Close]

BLAST of PI0010105 vs. NCBI nr
Match: KAG7014568.1 (DNA-directed RNA polymerases II and IV subunit 5A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100.5 bits (249), Expect = 1.8e-17
Identity = 50/66 (75.76%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 115 EEAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKETQVTDPIARHYGMKHRQVVKI 174
           +EAEL+V+V++HVL+P+HQLLTN+EKKTLLER T  VKETQVTDP+AR+YG+K  QVVKI
Sbjct: 241 QEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYT--VKETQVTDPVARYYGLKRGQVVKI 300

Query: 175 IRPSET 181
           IRPSET
Sbjct: 301 IRPSET 304

[Close]

BLAST of PI0010105 vs. NCBI nr
Match: XP_028944470.1 (DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 [Malus domestica])

HSP 1 Score: 99.8 bits (247), Expect = 3.0e-17
Identity = 58/111 (52.25%), Postives = 78/111 (70.27%), Query Frame = 0


Query: 76  TIHTYQG-VKEESWESKRMLARKELLPEVGTI-----GKGFGNHSEEAELMVDVEEHVLI 135
           T+ TY   +K E+     ++ ++ L P   T      GK      +EAEL+V+++EHVL+
Sbjct: 82  TMKTYTNRMKSENVFRAILVTQQSLTPFAKTCISEISGKFHLEVFQEAELLVNIKEHVLV 141

Query: 136 PDHQLLTNKEKKTLLERDTVSVKETQVTDPIARHYGMKHRQVVKIIRPSET 181
           P+H++LTN+EKKTLLER T  VKETQVTDPIA++YG+K  QVVKIIRPSET
Sbjct: 142 PEHRVLTNEEKKTLLERYT--VKETQVTDPIAKYYGLKRAQVVKIIRPSET 190

[Close]

BLAST of PI0010105 vs. NCBI nr
Match: XP_009337212.1 (PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like isoform X2 [Pyrus x bretschneideri] >XP_009361611.1 PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like isoform X2 [Pyrus x bretschneideri])

HSP 1 Score: 97.8 bits (242), Expect = 1.2e-16
Identity = 48/65 (73.85%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 116 EAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKETQVTDPIARHYGMKHRQVVKII 175
           EAEL+V+++EHVL+P+H++LTN+EKKTLLER T  VKETQVTDPIA++YG+K  QVVKII
Sbjct: 128 EAELLVNIKEHVLVPEHRVLTNEEKKTLLERYT--VKETQVTDPIAKYYGLKRAQVVKII 187

Query: 176 RPSET 181
           RPSET
Sbjct: 188 RPSET 190

[Close]

BLAST of PI0010105 vs. TAIR 10
Match: AT3G22320.1 (Eukaryotic rpb5 RNA polymerase subunit family protein )

HSP 1 Score: 89.7 bits (221), Expect = 2.9e-18
Identity = 47/71 (66.20%), Postives = 60/71 (84.51%), Query Frame = 0


Query: 115 EEAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKET-----QVTDPIARHYGMKHR 174
           +EAE++V+++EHVL+P+HQ+LT +EKKTLLER T  VKET     QVTDPIAR++G+K  
Sbjct: 126 QEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYT--VKETQLPRIQVTDPIARYFGLKRG 185

Query: 175 QVVKIIRPSET 181
           QVVKIIRPSET
Sbjct: 186 QVVKIIRPSET 194

[Close]

BLAST of PI0010105 vs. TAIR 10
Match: AT5G57980.1 (RNA polymerase II fifth largest subunit, C )

HSP 1 Score: 57.4 bits (137), Expect = 1.6e-08
Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 0


Query: 115 EEAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKETQ-----VTDPIARHYGMKHR 174
           EEAEL+ ++ EH L+  + +L ++ KK LL  +T +V++TQ     VTDP+AR+YG+K  
Sbjct: 131 EEAELVTNITEHKLVNKYYVLDDQAKKKLL--NTYTVQDTQLPRILVTDPLARYYGLKRG 190

Query: 175 QVVKIIRPSET 181
           QVVKI R   T
Sbjct: 191 QVVKIRRSDAT 199

[Close]

BLAST of PI0010105 vs. TAIR 10
Match: AT2G41340.1 (RNA polymerase II fifth largest subunit, D )

HSP 1 Score: 53.1 bits (126), Expect = 3.0e-07
Identity = 27/68 (39.71%), Postives = 45/68 (66.18%), Query Frame = 0


Query: 115 EEAELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKE---TQVTDPIARHYGMKHRQV 174
           E  +L+V+V +HVL P HQ+L +KEK++LL++ ++  K+       DPI R+YG++  QV
Sbjct: 139 EITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKDPIVRYYGLETGQV 198

Query: 175 VKIIRPSE 180
           +K+    E
Sbjct: 199 MKVTYKDE 206

[Close]

BLAST of PI0010105 vs. TAIR 10
Match: AT2G33990.1 (IQ-domain 9 )

HSP 1 Score: 50.1 bits (118), Expect = 2.6e-06
Identity = 25/41 (60.98%), Postives = 36/41 (87.80%), Query Frame = 0


Query: 20  SSSRVQQEIRARRLRMVTEYRVKQKKLENQMKLEAKIHELE 61
           S S++Q EI+ARR+ MVTE+R+K K+LE+Q KLEAK+H++E
Sbjct: 97  SWSKIQSEIKARRVCMVTEWRLKNKRLEHQQKLEAKLHDVE 137

[Close]

BLAST of PI0010105 vs. TAIR 10
Match: AT3G57080.1 (Eukaryotic rpb5 RNA polymerase subunit family protein )

HSP 1 Score: 47.0 bits (110), Expect = 2.2e-05
Identity = 23/60 (38.33%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 118 ELMVDVEEHVLIPDHQLLTNKEKKTLLERDTVSVKE---TQVTDPIARHYGMKHRQVVKI 175
           +L+V++ +H L P HQ+L ++EK TLL++ ++  K+       D I R+YG++  QVVK+
Sbjct: 146 DLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAIVRYYGLEKGQVVKV 205

The following BLAST results are available for this feature:

BLAST of PI0010105 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O81098	4.1e-17	66.20	DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana OX=370...	[more]
A8XGH1	1.3e-10	49.30	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis bri...	[more]
Q9N5K2	1.3e-10	49.30	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis ele...	[more]
Q54EH2	1.4e-09	50.00	DNA-directed RNA polymerases I, II, and III subunit rpabc1 OS=Dictyostelium disc...	[more]
Q6CA26	9.2e-09	31.30	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Yarrowia lipolytic...	[more]

BLAST of PI0010105 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E290	6.6e-18	77.27	DNA-directed RNA polymerases II and IV subunit 5A-like isoform X2 OS=Cucumis mel...	[more]
A0A498KFU4	9.5e-17	53.10	Cytokinin dehydrogenase OS=Malus domestica OX=3750 GN=DVH24_018123 PE=3 SV=1	[more]
A0A4Y1QZG9	1.2e-16	72.73	Eukaryotic rpb5 RNA polymerase subunit family protein OS=Prunus dulcis OX=3755 G...	[more]
A0A1D1ZFV1	1.2e-16	50.86	DNA-directed RNA polymerases I, II, and III subunit RPABC1 (Fragment) OS=Anthuri...	[more]
A0A1S3C8T2	2.1e-16	71.01	DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 OS=Cucumis mel...	[more]

BLAST of PI0010105 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895255.1	4.7e-18	55.93	DNA-directed RNA polymerases II and IV subunit 5A-like [Benincasa hispida] >XP_0...	[more]
XP_016902349.1	1.4e-17	77.27	PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like isoform X2 [Cu...	[more]
KAG7014568.1	1.8e-17	75.76	DNA-directed RNA polymerases II and IV subunit 5A, partial [Cucurbita argyrosper...	[more]
XP_028944470.1	3.0e-17	52.25	DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 [Malus domesti...	[more]
XP_009337212.1	1.2e-16	73.85	PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like isoform X2 [Py...	[more]

BLAST of PI0010105 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22320.1	2.9e-18	66.20	Eukaryotic rpb5 RNA polymerase subunit family protein	[more]
AT5G57980.1	1.6e-08	46.48	RNA polymerase II fifth largest subunit, C	[more]
AT2G41340.1	3.0e-07	39.71	RNA polymerase II fifth largest subunit, D	[more]
AT2G33990.1	2.6e-06	60.98	IQ-domain 9	[more]
AT3G57080.1	2.2e-05	38.33	Eukaryotic rpb5 RNA polymerase subunit family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 42..62
None	No IPR available	PANTHER	PTHR10535:SF17	DNA-DIRECTED RNA POLYMERASES II AND IV SUBUNIT 5A-LIKE	coord: 115..181
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	PFAM	PF01191	RNA_pol_Rpb5_C	coord: 121..181 e-value: 1.2E-13 score: 50.7
IPR035913	RPB5-like RNA polymerase subunit superfamily	GENE3D	3.90.940.20		coord: 116..188 e-value: 2.7E-13 score: 51.3
IPR035913	RPB5-like RNA polymerase subunit superfamily	SUPERFAMILY	55287	RPB5-like RNA polymerase subunit	coord: 119..181
IPR039531	DNA-directed RNA polymerase subunit Rpb5-like	PANTHER	PTHR10535	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1	coord: 115..181

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0010105.1	PI0010105.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005736	RNA polymerase I complex
cellular_component	GO:0005665	RNA polymerase II, core complex
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity